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The map label for this gene is psd

Identifier: 197119117

GI number: 197119117

Start: 3173083

End: 3173742

Strand: Reverse

Name: psd

Synonym: Gbem_2744

Alternate gene names: 197119117

Gene position: 3173742-3173083 (Counterclockwise)

Preceding gene: 197119118

Following gene: 197119116

Centisome position: 68.77

GC content: 61.36

Gene sequence:

>660_bases
ATGCGCAACACTGATACCCCGATCGCTGTAGAGGGGTACCCCTTCATAGCCGGATTCGCCGCAGCAACCCTGCTGCTGGC
GCTGCTTGGGCAGTTCCTGCACTGCGGATTCTTCGTCCCTGCCACTCTCTTCTTCGTACTCACCGTGTTTACCGTCTTCT
TCTTCAGAAACCCCGAGCGCGCGACGCCCGGCGACGAGAACACCGTGGTCGCCCCGGCCGACGGCGAGGTGATTTTTCTG
GGGAAAGTAATCGAGCCGCACACAAACGGCGAGTTCGAAAAGATCAGCATCTTCATGTCCGTCTTCAACGTCCACGTGAA
CCGCGCGCCGATCAGCGGCAAGGTGGTGGACGGCTTTTACACCAAGGGAAAATTTTTCGACGTGCGGGACGAGCGCGCCA
GCTTCGAGAACGAACAGCAGGGACTCGTGCTGGAGACGGCCGCAGGGCTTAGGATGGTCGTGGTGCAGGTGGCAGGCCTC
ATCGCCCGGCGCATCGTCTGCTACGCCAAGACCGGCGACTCCCTGAGCCGCGGTCGCCGTTACGGCCTGATTCGCTTCGG
GTCGCGCCTGGACATCTACCTCCCGCTCGGGACCAGCATAGACGTGGTCATGGGACAGAAAACGGTTGCAGGGGAGACCG
TACTGGGGATACTGCCGTGA

Upstream 100 bases:

>100_bases
TGGAGTCCGCCCGAATCCGGCCTTTTTATCGCCCTTACGCCGGGCGGGATCCGCTCACGACGCCGACGGCGTCGGATACT
ACTGACAATGAGGTACATTG

Downstream 100 bases:

>100_bases
GTGAAGAAACACCTAGAGTCGAAAGGGAAGGGATGCGCAAGGGGATCTATATCCTCCCCAACCTATTCACCGCCGGAAGC
CTTTTCGCCGGATTTTACTG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MRNTDTPIAVEGYPFIAGFAAATLLLALLGQFLHCGFFVPATLFFVLTVFTVFFFRNPERATPGDENTVVAPADGEVIFL
GKVIEPHTNGEFEKISIFMSVFNVHVNRAPISGKVVDGFYTKGKFFDVRDERASFENEQQGLVLETAAGLRMVVVQVAGL
IARRIVCYAKTGDSLSRGRRYGLIRFGSRLDIYLPLGTSIDVVMGQKTVAGETVLGILP

Sequences:

>Translated_219_residues
MRNTDTPIAVEGYPFIAGFAAATLLLALLGQFLHCGFFVPATLFFVLTVFTVFFFRNPERATPGDENTVVAPADGEVIFL
GKVIEPHTNGEFEKISIFMSVFNVHVNRAPISGKVVDGFYTKGKFFDVRDERASFENEQQGLVLETAAGLRMVVVQVAGL
IARRIVCYAKTGDSLSRGRRYGLIRFGSRLDIYLPLGTSIDVVMGQKTVAGETVLGILP
>Mature_219_residues
MRNTDTPIAVEGYPFIAGFAAATLLLALLGQFLHCGFFVPATLFFVLTVFTVFFFRNPERATPGDENTVVAPADGEVIFL
GKVIEPHTNGEFEKISIFMSVFNVHVNRAPISGKVVDGFYTKGKFFDVRDERASFENEQQGLVLETAAGLRMVVVQVAGL
IARRIVCYAKTGDSLSRGRRYGLIRFGSRLDIYLPLGTSIDVVMGQKTVAGETVLGILP

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_GEOBB (B5EHU9)

Other databases:

- EMBL:   CP001124
- RefSeq:   YP_002139544.1
- GeneID:   6782742
- GenomeReviews:   CP001124_GR
- KEGG:   gbm:Gbem_2744
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 23960; Mature: 23960

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNTDTPIAVEGYPFIAGFAAATLLLALLGQFLHCGFFVPATLFFVLTVFTVFFFRNPER
CCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ATPGDENTVVAPADGEVIFLGKVIEPHTNGEFEKISIFMSVFNVHVNRAPISGKVVDGFY
CCCCCCCEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECEE
TKGKFFDVRDERASFENEQQGLVLETAAGLRMVVVQVAGLIARRIVCYAKTGDSLSRGRR
CCCEEEECCCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHEEEEECCCHHHCCCE
YGLIRFGSRLDIYLPLGTSIDVVMGQKTVAGETVLGILP
EEEEEECCEEEEEEECCCCEEEEECCCEECCCEEEECCC
>Mature Secondary Structure
MRNTDTPIAVEGYPFIAGFAAATLLLALLGQFLHCGFFVPATLFFVLTVFTVFFFRNPER
CCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ATPGDENTVVAPADGEVIFLGKVIEPHTNGEFEKISIFMSVFNVHVNRAPISGKVVDGFY
CCCCCCCEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECEE
TKGKFFDVRDERASFENEQQGLVLETAAGLRMVVVQVAGLIARRIVCYAKTGDSLSRGRR
CCCEEEECCCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHEEEEECCCHHHCCCE
YGLIRFGSRLDIYLPLGTSIDVVMGQKTVAGETVLGILP
EEEEEECCEEEEEEECCCCEEEEECCCEECCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA