| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is aceK [H]
Identifier: 192288781
GI number: 192288781
Start: 369262
End: 371094
Strand: Reverse
Name: aceK [H]
Synonym: Rpal_0350
Alternate gene names: 192288781
Gene position: 371094-369262 (Counterclockwise)
Preceding gene: 192288782
Following gene: 192288780
Centisome position: 6.46
GC content: 65.41
Gene sequence:
>1833_bases ATGACCGCCACTGCTTCCCACACCCGCGCCAGGCCGCTCGGTGCCTCCGAGATCGAACACGCCACGCGGATCGCCGAGCC CGACTTCGACCTGCTCGACGCGCTGTACCGCACCGACGATCCCGACGATCAGGCGCGCCTGCTGGCGCGCGTGGTGCTGT CGGCCTTCGATAACTATTACGCGGTGTCGCGGCGAATTCCGGCGCTGGCTCAGGCGGCGTTCGAGGCGCGCGACTGGCCG GTGACGGTGCGGCTGTCGAAGATCCGGATCGGGCTGTACACGGCCTGCATCGACCAGCTGGTGCCGCTGCTGAAAGCCGG GCTGCCGGAGCTGACGACCGACGAACAGCTCTGGCCGACCGCCGAGGCCGAACTGCTGGCCGCGATCGAGGGCCGCTACG AGGCCGATTTCGCCTTCGCGTTCTGGCAGTCGCTGCGCCGCAAGCTGGTCAGCGACGAATGGCGGCCGGTGTCCTATGAC GCCGGCTCCACCGCACGTCGCACAACATCGCCCGCAGCGGTGCTGAAGACGACCACCACCACGCTGCCGATCACCGCCGA GGTGATCGCCGGGATTCTTGGCGACGCCGGCTTCCGCGTGCCGTGGCGGGATCGCGACGGCGACGCGGCGCTCGCCGCGC AGGCGATCGAGACGGCGCTGGAGCCGCTCAGCCCGCGGCCCGGCGAACCGGTCAAAATCGAGATCGCCGACGCCGGCTTC TTCCGCAATCGCGGCGCCTGCCTGGTCGGCCGGATCCAACTGCGCGATCGCGGCGACATGCCGATGCGCAACCTGCCGCT GCTGATCGCGCTGCTCAACGAGAAGGACGGGCTGGTCGTCGACGCTGTGCTGACCGACAGCGACGAGCTGCAATACGCAT TCTCCTCGACGCTGGCAAACTATCACGCCACCAATCCGCGCTATCATGAACTGGCCCGGCTGCTTTACGAGCTGATGCCG AAGCGGCCGCTCGGCACGCAGTACTCGTGCATCGGCTTCCATCACCTCGGCAAGGTCGCGGTGATGAGCGAGATCCTGGC GGAACATCGCAAGACAAAGGAGAGACTCGCCACCGCGCCAGGCTTCAAGGGAACGGTCGCGATCGCCTTCACGATGCCAT CGTCGGCCTATGTGCTGAAGATCATCCGCGACCATCCGACCGACGACTACAAGTTCGATTACTTCGACGGCCTCGACGAG GTGTTGCGCAAATACAACCTGGTGCACGAGATCGACCGCGCCGGCTCGATGCTCGACAACATCATCTATTCCAACGTCAA GCTCGACCGCGCGATGTTCGCGCCGGAGCTGCTCGATGAACTGCTGGAAGCAGGGATCGGAACGGTGACGCTCGATCGCG GCGCGCTGGTGTTCCGGCATCTGATCGTGCAGATCAAACTGACGCCGCTCCCGCTGTATCTCGCCAACGCATCCGCAGCC GAATCCCGCGCCGCGGTGATCAATCTCGGCGATTGCATCAAGAACAACGCCGCGGCCGATATCTTCAACAAAGATCTCGA CGGCCGCAATTACGGCGTCAGCCGAATCCGCAAAGTCTATCTGTTCGACTACGACGCAGTGGAGCCGCTGACCTCGGTCA CCGTGAGCCGTGACGGTGCGGCGCCGGGTGAATTCGACAATGGCATGGTGTTCAGGCCGCAGGAGATGCTGGAGGGGCTG CGGATCGACGACCCCGGCCTGCGCCGCGCCTTCCGCGATGCGCATCCCGAACTGATGCAGGCCGATTATTGGGAAGGCAT GCAGCGCGCGCTTCGCGACGGCAAGGTGCCGAAGGTGATGAATTATCCGGCGTCGCGGCGGCTGCAACGGTAG
Upstream 100 bases:
>100_bases TGGCGTGATCGCCCCGGTGGTTCGGTCGGCGGCCGGCTGACAGGTCGGCGCCAACAAGCGGCCGGAGGCGCGAAACGACG AGATGCGCTGACCCCACGCA
Downstream 100 bases:
>100_bases GCGCGCGCCGCAGACATCCCGGCCCTTGCCGAACATCGGCGCGGTCTCTACCTGTTCGAGGCTGTTTTTCGGGACGAGGA CGCCGCCATGCTCGACGCCG
Product: bifunctional isocitrate dehydrogenase kinase/phosphatase protein
Products: NA
Alternate protein names: IDH kinase/phosphatase; IDHK/P [H]
Number of amino acids: Translated: 610; Mature: 609
Protein sequence:
>610_residues MTATASHTRARPLGASEIEHATRIAEPDFDLLDALYRTDDPDDQARLLARVVLSAFDNYYAVSRRIPALAQAAFEARDWP VTVRLSKIRIGLYTACIDQLVPLLKAGLPELTTDEQLWPTAEAELLAAIEGRYEADFAFAFWQSLRRKLVSDEWRPVSYD AGSTARRTTSPAAVLKTTTTTLPITAEVIAGILGDAGFRVPWRDRDGDAALAAQAIETALEPLSPRPGEPVKIEIADAGF FRNRGACLVGRIQLRDRGDMPMRNLPLLIALLNEKDGLVVDAVLTDSDELQYAFSSTLANYHATNPRYHELARLLYELMP KRPLGTQYSCIGFHHLGKVAVMSEILAEHRKTKERLATAPGFKGTVAIAFTMPSSAYVLKIIRDHPTDDYKFDYFDGLDE VLRKYNLVHEIDRAGSMLDNIIYSNVKLDRAMFAPELLDELLEAGIGTVTLDRGALVFRHLIVQIKLTPLPLYLANASAA ESRAAVINLGDCIKNNAAADIFNKDLDGRNYGVSRIRKVYLFDYDAVEPLTSVTVSRDGAAPGEFDNGMVFRPQEMLEGL RIDDPGLRRAFRDAHPELMQADYWEGMQRALRDGKVPKVMNYPASRRLQR
Sequences:
>Translated_610_residues MTATASHTRARPLGASEIEHATRIAEPDFDLLDALYRTDDPDDQARLLARVVLSAFDNYYAVSRRIPALAQAAFEARDWP VTVRLSKIRIGLYTACIDQLVPLLKAGLPELTTDEQLWPTAEAELLAAIEGRYEADFAFAFWQSLRRKLVSDEWRPVSYD AGSTARRTTSPAAVLKTTTTTLPITAEVIAGILGDAGFRVPWRDRDGDAALAAQAIETALEPLSPRPGEPVKIEIADAGF FRNRGACLVGRIQLRDRGDMPMRNLPLLIALLNEKDGLVVDAVLTDSDELQYAFSSTLANYHATNPRYHELARLLYELMP KRPLGTQYSCIGFHHLGKVAVMSEILAEHRKTKERLATAPGFKGTVAIAFTMPSSAYVLKIIRDHPTDDYKFDYFDGLDE VLRKYNLVHEIDRAGSMLDNIIYSNVKLDRAMFAPELLDELLEAGIGTVTLDRGALVFRHLIVQIKLTPLPLYLANASAA ESRAAVINLGDCIKNNAAADIFNKDLDGRNYGVSRIRKVYLFDYDAVEPLTSVTVSRDGAAPGEFDNGMVFRPQEMLEGL RIDDPGLRRAFRDAHPELMQADYWEGMQRALRDGKVPKVMNYPASRRLQR >Mature_609_residues TATASHTRARPLGASEIEHATRIAEPDFDLLDALYRTDDPDDQARLLARVVLSAFDNYYAVSRRIPALAQAAFEARDWPV TVRLSKIRIGLYTACIDQLVPLLKAGLPELTTDEQLWPTAEAELLAAIEGRYEADFAFAFWQSLRRKLVSDEWRPVSYDA GSTARRTTSPAAVLKTTTTTLPITAEVIAGILGDAGFRVPWRDRDGDAALAAQAIETALEPLSPRPGEPVKIEIADAGFF RNRGACLVGRIQLRDRGDMPMRNLPLLIALLNEKDGLVVDAVLTDSDELQYAFSSTLANYHATNPRYHELARLLYELMPK RPLGTQYSCIGFHHLGKVAVMSEILAEHRKTKERLATAPGFKGTVAIAFTMPSSAYVLKIIRDHPTDDYKFDYFDGLDEV LRKYNLVHEIDRAGSMLDNIIYSNVKLDRAMFAPELLDELLEAGIGTVTLDRGALVFRHLIVQIKLTPLPLYLANASAAE SRAAVINLGDCIKNNAAADIFNKDLDGRNYGVSRIRKVYLFDYDAVEPLTSVTVSRDGAAPGEFDNGMVFRPQEMLEGLR IDDPGLRRAFRDAHPELMQADYWEGMQRALRDGKVPKVMNYPASRRLQR
Specific function: Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source
COG id: COG4579
COG function: function code T; Isocitrate dehydrogenase kinase/phosphatase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AceK family [H]
Homologues:
Organism=Escherichia coli, GI1790446, Length=581, Percent_Identity=26.3339070567986, Blast_Score=178, Evalue=1e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010452 - ProDom: PD043552 [H]
Pfam domain/function: PF06315 AceK [H]
EC number: =2.7.11.5 [H]
Molecular weight: Translated: 67979; Mature: 67848
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTATASHTRARPLGASEIEHATRIAEPDFDLLDALYRTDDPDDQARLLARVVLSAFDNYY CCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH AVSRRIPALAQAAFEARDWPVTVRLSKIRIGLYTACIDQLVPLLKAGLPELTTDEQLWPT HHHHCCHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC AEAELLAAIEGRYEADFAFAFWQSLRRKLVSDEWRPVSYDAGSTARRTTSPAAVLKTTTT HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHEEEECCC TLPITAEVIAGILGDAGFRVPWRDRDGDAALAAQAIETALEPLSPRPGEPVKIEIADAGF CCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC FRNRGACLVGRIQLRDRGDMPMRNLPLLIALLNEKDGLVVDAVLTDSDELQYAFSSTLAN CCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHH YHATNPRYHELARLLYELMPKRPLGTQYSCIGFHHLGKVAVMSEILAEHRKTKERLATAP HCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GFKGTVAIAFTMPSSAYVLKIIRDHPTDDYKFDYFDGLDEVLRKYNLVHEIDRAGSMLDN CCCCEEEEEEECCCCCEEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH IIYSNVKLDRAMFAPELLDELLEAGIGTVTLDRGALVFRHLIVQIKLTPLPLYLANASAA HHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHEEECCCEEEEECCCCC ESRAAVINLGDCIKNNAAADIFNKDLDGRNYGVSRIRKVYLFDYDAVEPLTSVTVSRDGA CCCEEEEECHHHHCCCCHHHHHHCCCCCCCCCHHHHEEEEEECCHHHCHHHHEEEECCCC APGEFDNGMVFRPQEMLEGLRIDDPGLRRAFRDAHPELMQADYWEGMQRALRDGKVPKVM CCCCCCCCCEECHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHH NYPASRRLQR CCCHHHHCCC >Mature Secondary Structure TATASHTRARPLGASEIEHATRIAEPDFDLLDALYRTDDPDDQARLLARVVLSAFDNYY CCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH AVSRRIPALAQAAFEARDWPVTVRLSKIRIGLYTACIDQLVPLLKAGLPELTTDEQLWPT HHHHCCHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC AEAELLAAIEGRYEADFAFAFWQSLRRKLVSDEWRPVSYDAGSTARRTTSPAAVLKTTTT HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHEEEECCC TLPITAEVIAGILGDAGFRVPWRDRDGDAALAAQAIETALEPLSPRPGEPVKIEIADAGF CCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC FRNRGACLVGRIQLRDRGDMPMRNLPLLIALLNEKDGLVVDAVLTDSDELQYAFSSTLAN CCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHH YHATNPRYHELARLLYELMPKRPLGTQYSCIGFHHLGKVAVMSEILAEHRKTKERLATAP HCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GFKGTVAIAFTMPSSAYVLKIIRDHPTDDYKFDYFDGLDEVLRKYNLVHEIDRAGSMLDN CCCCEEEEEEECCCCCEEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH IIYSNVKLDRAMFAPELLDELLEAGIGTVTLDRGALVFRHLIVQIKLTPLPLYLANASAA HHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHEEECCCEEEEECCCCC ESRAAVINLGDCIKNNAAADIFNKDLDGRNYGVSRIRKVYLFDYDAVEPLTSVTVSRDGA CCCEEEEECHHHHCCCCHHHHHHCCCCCCCCCHHHHEEEEEECCHHHCHHHHEEEECCCC APGEFDNGMVFRPQEMLEGLRIDDPGLRRAFRDAHPELMQADYWEGMQRALRDGKVPKVM CCCCCCCCCEECHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHH NYPASRRLQR CCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA