Click here to switch to the map view.

The map label for this gene is rutD [H]

Identifier: 192288782

GI number: 192288782

Start: 371430

End: 372281

Strand: Reverse

Name: rutD [H]

Synonym: Rpal_0351

Alternate gene names: 192288782

Gene position: 372281-371430 (Counterclockwise)

Preceding gene: 192288786

Following gene: 192288781

Centisome position: 6.48

GC content: 63.26

Gene sequence:

>852_bases
ATGGCGAAGCTGACTCAGTTTCTGATTTCTGGCGCTTGTGCACTGCTTATCACCGCGACCTCCGCCATCGCCGATCCGAT
CGCGCCGGCCGGCAAGCCGATCGGCCAGGACGCGGGTGGGCGCACCATCTATCAGGTCGACGCCAACGGCATTTCGATCG
GCTACAAGCTAATCGGCCAGGGCGCGCCGATGGTGATGATCATGGGGCTCGGCGGCACCGCCGAGAACTGGCCGCCCCAG
GTAGTCGAGGCGCTGTCGAAGAACCATCAGCTGATCCTGATGGACAATCGCGGCATGGGTCACACGACCGCCAACGATAA
CCCCTTTAGCTATCCGCTGTTCGCCGCCGACGTGATCGGACTGCTCGATGCGCTCGGTGTCAAGCGCAGCGATGTGCTCG
GCTATTCGATGGGCAGCACGATTACCCAGCAATTGCTGCTGCAGTATCCGGACCGGTTCAACAAGGCGCTGATCCATGCC
ACCTCGACCGACGGCAGCAACGTCGCCAAGGCGCTGCACGGCCGGGTGCCGGCCGACCCGATCGTGGCTCGGCAGGTCGA
GGCCACCACCCATTGGAAGACCCCGCTGGATAAGCTGCCGTCGATCGACAATCAGGTGATGCTGGTGGTCGGCACCGCCG
ACAACGTGGTCGGCACCGAGAGTTCGAAGACGATTGCCTCCGCGATTCCCGGAGCGTGGCTGGTCCAGTTCAAGGGAGCA
ACGCACCATCTGATGTACGAGACTCCCGAAGGCTTCTCAGCCGCCGCGCTGACGTTCTTCGAGACCAATGAGACCGTGAC
ACCGAAGATCGAGCCGAACGCGTCCGTCGCGCCGCCACCCACGCAGCCATGA

Upstream 100 bases:

>100_bases
CGTAGGCTTCTCCAGACGGCCAGAATTGGTGCTCGCTCAAGGACAACGATTCGAAGGGCTGCTATGTGGCGACGATTCGA
GCCGCTGTGAGGTCGTTGAG

Downstream 100 bases:

>100_bases
GGCGGGCTGAAGCGGGGCGACGTCGTCCTACCTGTCGCATCGGGTGATCTTGGAAAGCCCAAAGACGTCACGCAGGCAGG
CTGGACAGTGCGCGGGTGCT

Product: alpha/beta hydrolase fold protein

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MAKLTQFLISGACALLITATSAIADPIAPAGKPIGQDAGGRTIYQVDANGISIGYKLIGQGAPMVMIMGLGGTAENWPPQ
VVEALSKNHQLILMDNRGMGHTTANDNPFSYPLFAADVIGLLDALGVKRSDVLGYSMGSTITQQLLLQYPDRFNKALIHA
TSTDGSNVAKALHGRVPADPIVARQVEATTHWKTPLDKLPSIDNQVMLVVGTADNVVGTESSKTIASAIPGAWLVQFKGA
THHLMYETPEGFSAAALTFFETNETVTPKIEPNASVAPPPTQP

Sequences:

>Translated_283_residues
MAKLTQFLISGACALLITATSAIADPIAPAGKPIGQDAGGRTIYQVDANGISIGYKLIGQGAPMVMIMGLGGTAENWPPQ
VVEALSKNHQLILMDNRGMGHTTANDNPFSYPLFAADVIGLLDALGVKRSDVLGYSMGSTITQQLLLQYPDRFNKALIHA
TSTDGSNVAKALHGRVPADPIVARQVEATTHWKTPLDKLPSIDNQVMLVVGTADNVVGTESSKTIASAIPGAWLVQFKGA
THHLMYETPEGFSAAALTFFETNETVTPKIEPNASVAPPPTQP
>Mature_282_residues
AKLTQFLISGACALLITATSAIADPIAPAGKPIGQDAGGRTIYQVDANGISIGYKLIGQGAPMVMIMGLGGTAENWPPQV
VEALSKNHQLILMDNRGMGHTTANDNPFSYPLFAADVIGLLDALGVKRSDVLGYSMGSTITQQLLLQYPDRFNKALIHAT
STDGSNVAKALHGRVPADPIVARQVEATTHWKTPLDKLPSIDNQVMLVVGTADNVVGTESSKTIASAIPGAWLVQFKGAT
HHLMYETPEGFSAAALTFFETNETVTPKIEPNASVAPPPTQP

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 29825; Mature: 29694

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKLTQFLISGACALLITATSAIADPIAPAGKPIGQDAGGRTIYQVDANGISIGYKLIGQ
CHHHHHHHHHHHHHEEHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECC
GAPMVMIMGLGGTAENWPPQVVEALSKNHQLILMDNRGMGHTTANDNPFSYPLFAADVIG
CCCEEEEEECCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
LLDALGVKRSDVLGYSMGSTITQQLLLQYPDRFNKALIHATSTDGSNVAKALHGRVPADP
HHHHHCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCC
IVARQVEATTHWKTPLDKLPSIDNQVMLVVGTADNVVGTESSKTIASAIPGAWLVQFKGA
HHHHEECCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCEEEEEECCC
THHLMYETPEGFSAAALTFFETNETVTPKIEPNASVAPPPTQP
CEEEEEECCCCCCEEEEEEEECCCEECCEECCCCCCCCCCCCC
>Mature Secondary Structure 
AKLTQFLISGACALLITATSAIADPIAPAGKPIGQDAGGRTIYQVDANGISIGYKLIGQ
HHHHHHHHHHHHHEEHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECC
GAPMVMIMGLGGTAENWPPQVVEALSKNHQLILMDNRGMGHTTANDNPFSYPLFAADVIG
CCCEEEEEECCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
LLDALGVKRSDVLGYSMGSTITQQLLLQYPDRFNKALIHATSTDGSNVAKALHGRVPADP
HHHHHCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCC
IVARQVEATTHWKTPLDKLPSIDNQVMLVVGTADNVVGTESSKTIASAIPGAWLVQFKGA
HHHHEECCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCEEEEEECCC
THHLMYETPEGFSAAALTFFETNETVTPKIEPNASVAPPPTQP
CEEEEEECCCCCCEEEEEEEECCCEECCEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA