| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189184231
Identifier: 189184231
GI number: 189184231
Start: 1344115
End: 1345500
Strand: Reverse
Name: 189184231
Synonym: OTT_1324
Alternate gene names: NA
Gene position: 1345500-1344115 (Counterclockwise)
Preceding gene: 189184232
Following gene: 189184228
Centisome position: 66.97
GC content: 25.32
Gene sequence:
>1386_bases ATGAGAATAAAATTAGTCAATAACTCAGCATATATAAAGCAATTAGGCATTGTCATTATCATAGCTAAAATCATATATTC TACAATATTATTTTGTGTAGAAATGCCATTTTTATCTCCTCTGTTTATTAATAAAGATATATTCAACTATGCATCTGTTG AATGTAATCACTTGCCAATAATGTTATCCTTACTTACTAGTTGTATACTAGCAATCAATATTAGCAATTCTGTACCAAAA CGTTATCACCTAATTAAGATATTACAATACTTAGCACTCATAGGAATTATTTGCATTATATTTCCACAGATATATAGTAC CCAGGTAATCTTAAATAACTATATTCCCATAATAAATAACCTAATTTTTATATTAGGGCTATCTTGTTTTGGAGTAGCAA TAATTCTTTTACATCTTGTTACGATTAACATATATAACTTAACAAGTATAACTTTAACATTAATTATTTTTATTGTTTTC ATTAGCTTTACTTGTTCTTATTACAGCTTACAAACAATAATTATCAAATATCCAATTGATTTACCATTTTTTTACGAAGC TATATTTTGGAGTGGTAGTAATATTATGAATGTTTTTTTTACCCAAACATTAATGGTAGCATGGGTATATTTAACACAAT CACTATTACATATTAAGTTCAATGGCAAAATAGTTTTTATATACACAGTTTTAATACTATTAAATACAGTAGTAGCAATT TCTGGATTATTGGGACACTTAATACATGATATGGAATCTCCATACTTTCGGGAATTCTATATTAACTACACTCAATATTT TGTTAGTATAGCCCCAATTTTTTTTGCACTAACAGCATTGCATCAATTATTAACTATTAAATTTTATAAAAGTAACTACT ACCATAATTTCAATAAGACAAATTTTAGCTTAGAAAATATAAACTTAACTCCCAATACAAACACAGAAAAAGATTTTCAA ATTTTTCCGAACAGATATTGGCAACAAATCACTCCATCTTCTCAAAAGATAATATATCATGGTCTGCTATCATCGATTAT ATTATTTATTACTGTTCATATAATAGGCTTATTAGTAAAATGTATAAATTCTATTGTTTATTATGCATCAACAATAAGCA TTGCATTAATTTTTATGACTATCAGCTACTATATTGCTAATAACAAATACGTAATTAATAATAAACTTGCTATACTGCAA TTATGGCTGTACTGCATTAGTTGTTTGTTAAATCTAATAGATTTTGATCATATTAATTCGACCTTAAATTTAGTAAAAAT AATTACTAATGTAGCATGTTATAGTAAAATAATAACTATTCTAACACAAGTGTTTTTCATCATCATTATCTATAATGCTC GCATAAATAAGTTTAGCAGCAGTTAA
Upstream 100 bases:
>100_bases ATGACTGCATAAAAATAATTACAAGCTCTTCATCTCAATTACGCAAAGCCAAAAAAGATGCACCTACTAACTCTGATAAA GTTGCTAAATCAAAATCTTA
Downstream 100 bases:
>100_bases TGTATTTTTTAATAGATATGCTACTGTCATTGGCCCTACCCCACCTGGAACTGGAGTAATAAATTTTACTAAATCTTTGA TTTTTAAAAAATCTCCATCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 461; Mature: 461
Protein sequence:
>461_residues MRIKLVNNSAYIKQLGIVIIIAKIIYSTILFCVEMPFLSPLFINKDIFNYASVECNHLPIMLSLLTSCILAINISNSVPK RYHLIKILQYLALIGIICIIFPQIYSTQVILNNYIPIINNLIFILGLSCFGVAIILLHLVTINIYNLTSITLTLIIFIVF ISFTCSYYSLQTIIIKYPIDLPFFYEAIFWSGSNIMNVFFTQTLMVAWVYLTQSLLHIKFNGKIVFIYTVLILLNTVVAI SGLLGHLIHDMESPYFREFYINYTQYFVSIAPIFFALTALHQLLTIKFYKSNYYHNFNKTNFSLENINLTPNTNTEKDFQ IFPNRYWQQITPSSQKIIYHGLLSSIILFITVHIIGLLVKCINSIVYYASTISIALIFMTISYYIANNKYVINNKLAILQ LWLYCISCLLNLIDFDHINSTLNLVKIITNVACYSKIITILTQVFFIIIIYNARINKFSSS
Sequences:
>Translated_461_residues MRIKLVNNSAYIKQLGIVIIIAKIIYSTILFCVEMPFLSPLFINKDIFNYASVECNHLPIMLSLLTSCILAINISNSVPK RYHLIKILQYLALIGIICIIFPQIYSTQVILNNYIPIINNLIFILGLSCFGVAIILLHLVTINIYNLTSITLTLIIFIVF ISFTCSYYSLQTIIIKYPIDLPFFYEAIFWSGSNIMNVFFTQTLMVAWVYLTQSLLHIKFNGKIVFIYTVLILLNTVVAI SGLLGHLIHDMESPYFREFYINYTQYFVSIAPIFFALTALHQLLTIKFYKSNYYHNFNKTNFSLENINLTPNTNTEKDFQ IFPNRYWQQITPSSQKIIYHGLLSSIILFITVHIIGLLVKCINSIVYYASTISIALIFMTISYYIANNKYVINNKLAILQ LWLYCISCLLNLIDFDHINSTLNLVKIITNVACYSKIITILTQVFFIIIIYNARINKFSSS >Mature_461_residues MRIKLVNNSAYIKQLGIVIIIAKIIYSTILFCVEMPFLSPLFINKDIFNYASVECNHLPIMLSLLTSCILAINISNSVPK RYHLIKILQYLALIGIICIIFPQIYSTQVILNNYIPIINNLIFILGLSCFGVAIILLHLVTINIYNLTSITLTLIIFIVF ISFTCSYYSLQTIIIKYPIDLPFFYEAIFWSGSNIMNVFFTQTLMVAWVYLTQSLLHIKFNGKIVFIYTVLILLNTVVAI SGLLGHLIHDMESPYFREFYINYTQYFVSIAPIFFALTALHQLLTIKFYKSNYYHNFNKTNFSLENINLTPNTNTEKDFQ IFPNRYWQQITPSSQKIIYHGLLSSIILFITVHIIGLLVKCINSIVYYASTISIALIFMTISYYIANNKYVINNKLAILQ LWLYCISCLLNLIDFDHINSTLNLVKIITNVACYSKIITILTQVFFIIIIYNARINKFSSS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To A.aeolicus AQ_155 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000883 [H]
Pfam domain/function: PF00115 COX1 [H]
EC number: NA
Molecular weight: Translated: 53187; Mature: 53187
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIKLVNNSAYIKQLGIVIIIAKIIYSTILFCVEMPFLSPLFINKDIFNYASVECNHLPI CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHCCCCCCCHHH MLSLLTSCILAINISNSVPKRYHLIKILQYLALIGIICIIFPQIYSTQVILNNYIPIINN HHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LIFILGLSCFGVAIILLHLVTINIYNLTSITLTLIIFIVFISFTCSYYSLQTIIIKYPID HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCC LPFFYEAIFWSGSNIMNVFFTQTLMVAWVYLTQSLLHIKFNGKIVFIYTVLILLNTVVAI CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEHHHHHHHHHHHHHHH SGLLGHLIHDMESPYFREFYINYTQYFVSIAPIFFALTALHQLLTIKFYKSNYYHNFNKT HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCC NFSLENINLTPNTNTEKDFQIFPNRYWQQITPSSQKIIYHGLLSSIILFITVHIIGLLVK CEEEEEEEECCCCCCCCCCEECCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH CINSIVYYASTISIALIFMTISYYIANNKYVINNKLAILQLWLYCISCLLNLIDFDHINS HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH TLNLVKIITNVACYSKIITILTQVFFIIIIYNARINKFSSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MRIKLVNNSAYIKQLGIVIIIAKIIYSTILFCVEMPFLSPLFINKDIFNYASVECNHLPI CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHCCCCCCCHHH MLSLLTSCILAINISNSVPKRYHLIKILQYLALIGIICIIFPQIYSTQVILNNYIPIINN HHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LIFILGLSCFGVAIILLHLVTINIYNLTSITLTLIIFIVFISFTCSYYSLQTIIIKYPID HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCC LPFFYEAIFWSGSNIMNVFFTQTLMVAWVYLTQSLLHIKFNGKIVFIYTVLILLNTVVAI CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEHHHHHHHHHHHHHHH SGLLGHLIHDMESPYFREFYINYTQYFVSIAPIFFALTALHQLLTIKFYKSNYYHNFNKT HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCC NFSLENINLTPNTNTEKDFQIFPNRYWQQITPSSQKIIYHGLLSSIILFITVHIIGLLVK CEEEEEEEECCCCCCCCCCEECCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH CINSIVYYASTISIALIFMTISYYIANNKYVINNKLAILQLWLYCISCLLNLIDFDHINS HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH TLNLVKIITNVACYSKIITILTQVFFIIIIYNARINKFSSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9823893 [H]