Definition Treponema pallidum subsp. pallidum SS14, complete genome.
Accession NC_010741
Length 1,139,457

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The map label for this gene is pncA [C]

Identifier: 189025921

GI number: 189025921

Start: 765689

End: 766525

Strand: Reverse

Name: pncA [C]

Synonym: TPASS_0696

Alternate gene names: 189025921

Gene position: 766525-765689 (Counterclockwise)

Preceding gene: 189025922

Following gene: 189025918

Centisome position: 67.27

GC content: 54.48

Gene sequence:

>837_bases
ATGAGCAGAGCCTTTTTTTTGGTTGATTTTCAAAATGATTTTTGCGATCCACGCGGTGCGTTGTTCGTTCCCGGCGCGGA
TCAGGACTGTGTGCGCGTTGCTGAGTTCTTGCGCGTGCACGCTGCGCATGTGGATGCATTGTACGTAAGTTGCGATCGGC
ACCCGCGGATGCACGTTGCGCACCCCTGTTTTTGGCGCTCCCTGACAGGAGATGCTCTCGGTCCTTTTGATACAGTTTCG
TTCGAACGTTTGCGTTCTGGGGCGTGTGTGCCTGTGCGTGTCGGCTATGTACAGACCGTAGCGGGGTACTTGGCATTCCG
TGCATATACCGGAAAGGGGCCTCTATACCTTTGGCCCGAGCATTGTGTGCGTGGCAGTTGGGGACAGGCGGTGCACCCGC
TTATCGTGGAGGCGGTGCGCTTTTGGCAACGCGCGCATCGTACAAGACATCCTCAGTTTTTCTTTAAAGGAGAAAACCCC
TGTGTGGAACAATTTAGTGTGCTGTCCTCGGAGTATCCAGCGTCTCAAGGGACTGCGGATTCTCTTTTTGTTAAGCGCTG
CCAAATGCTCCGCGCACATGAGCGTATTTTCGTAGCAGGTGAAGCACTCTCGCATTGTGTTGTGTGTACGCTGCAGGATA
TGCAGCGCGCAGGGGTCCTCTCACGCGTGAGTTTGTTGAAGGACGGTAGTAGCGTGGTGCCTGGTTTTGAGCAAAAAACG
GCCGCGTCCGTGCAGACTCTCTGTGCACAGGGACTGACGTGGCTGCGTATGACTGAGGCCGCAGAGCTTTTGCGCACGCG
TTTTATTTTTTCTGGCACTGAACATCAGGACAGTTGA

Upstream 100 bases:

>100_bases
CCGCTGACGGTGCAGATAGGGCCTGTGTTCCGGGTCTAGCTTGTGCTGCTGGGGTGGGGTATGCGCGCACGCGCGTGCGC
GTTCCTGCGCGCGCTTCCCT

Downstream 100 bases:

>100_bases
AAGGAGTCAAACGCGTATAGTAATCCTTGAATGCCACCGCGAATAAGTGCGCGCCATAACTCTGCGAGGTTTTGGGAACG
CGCAAAGCACAGCGCAGGTT

Product: nicotinamidase

Products: nicotinate; NH3

Alternate protein names: None

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSRAFFLVDFQNDFCDPRGALFVPGADQDCVRVAEFLRVHAAHVDALYVSCDRHPRMHVAHPCFWRSLTGDALGPFDTVS
FERLRSGACVPVRVGYVQTVAGYLAFRAYTGKGPLYLWPEHCVRGSWGQAVHPLIVEAVRFWQRAHRTRHPQFFFKGENP
CVEQFSVLSSEYPASQGTADSLFVKRCQMLRAHERIFVAGEALSHCVVCTLQDMQRAGVLSRVSLLKDGSSVVPGFEQKT
AASVQTLCAQGLTWLRMTEAAELLRTRFIFSGTEHQDS

Sequences:

>Translated_278_residues
MSRAFFLVDFQNDFCDPRGALFVPGADQDCVRVAEFLRVHAAHVDALYVSCDRHPRMHVAHPCFWRSLTGDALGPFDTVS
FERLRSGACVPVRVGYVQTVAGYLAFRAYTGKGPLYLWPEHCVRGSWGQAVHPLIVEAVRFWQRAHRTRHPQFFFKGENP
CVEQFSVLSSEYPASQGTADSLFVKRCQMLRAHERIFVAGEALSHCVVCTLQDMQRAGVLSRVSLLKDGSSVVPGFEQKT
AASVQTLCAQGLTWLRMTEAAELLRTRFIFSGTEHQDS
>Mature_277_residues
SRAFFLVDFQNDFCDPRGALFVPGADQDCVRVAEFLRVHAAHVDALYVSCDRHPRMHVAHPCFWRSLTGDALGPFDTVSF
ERLRSGACVPVRVGYVQTVAGYLAFRAYTGKGPLYLWPEHCVRGSWGQAVHPLIVEAVRFWQRAHRTRHPQFFFKGENPC
VEQFSVLSSEYPASQGTADSLFVKRCQMLRAHERIFVAGEALSHCVVCTLQDMQRAGVLSRVSLLKDGSSVVPGFEQKTA
ASVQTLCAQGLTWLRMTEAAELLRTRFIFSGTEHQDS

Specific function: NAD biosynthesis; nicotinamide to NaMN; first step. [C]

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.5.1.19

Molecular weight: Translated: 31187; Mature: 31056

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRAFFLVDFQNDFCDPRGALFVPGADQDCVRVAEFLRVHAAHVDALYVSCDRHPRMHVA
CCCEEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEEC
HPCFWRSLTGDALGPFDTVSFERLRSGACVPVRVGYVQTVAGYLAFRAYTGKGPLYLWPE
CCHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHEECCCCCEEECHH
HCVRGSWGQAVHPLIVEAVRFWQRAHRTRHPQFFFKGENPCVEQFSVLSSEYPASQGTAD
HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCHH
SLFVKRCQMLRAHERIFVAGEALSHCVVCTLQDMQRAGVLSRVSLLKDGSSVVPGFEQKT
HHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
AASVQTLCAQGLTWLRMTEAAELLRTRFIFSGTEHQDS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SRAFFLVDFQNDFCDPRGALFVPGADQDCVRVAEFLRVHAAHVDALYVSCDRHPRMHVA
CCEEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEEC
HPCFWRSLTGDALGPFDTVSFERLRSGACVPVRVGYVQTVAGYLAFRAYTGKGPLYLWPE
CCHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHEECCCCCEEECHH
HCVRGSWGQAVHPLIVEAVRFWQRAHRTRHPQFFFKGENPCVEQFSVLSSEYPASQGTAD
HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCHH
SLFVKRCQMLRAHERIFVAGEALSHCVVCTLQDMQRAGVLSRVSLLKDGSSVVPGFEQKT
HHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
AASVQTLCAQGLTWLRMTEAAELLRTRFIFSGTEHQDS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: nicotinamide; H2O

Specific reaction: nicotinamide + H2O = nicotinate + NH3

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA