Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188528235

Identifier: 188528235

GI number: 188528235

Start: 1454049

End: 1454726

Strand: Reverse

Name: 188528235

Synonym: HPSH_07495

Alternate gene names: NA

Gene position: 1454726-1454049 (Counterclockwise)

Preceding gene: 188528236

Following gene: 188528234

Centisome position: 90.44

GC content: 40.71

Gene sequence:

>678_bases
ATGAGAGCTACGGCGATAAAAATCTTTTCACTCTCATCAGCATTAGCCCTATTGCTTCAGGGTTGCTTGAGCATCAATTT
AAAACAAATGCTACCAGAGATCAGAACTTATGATTTGAATGCGAGTTCTTTTGAAATCACGCAATGCCCTAAACCTTTGA
CTGAAGTGAGGCTCATTAGTATTTTGAGTGCGGATTTATTCAACACTAAAGAGATCGTGTTTAAAGCCAAAGACGGGCAG
ATCACGCATGGGAAACACCAAAAATGGATAGACTTGCCTCGCAACATGTTAAAAACCATGTTCATGCAAGAAGCGCAAAA
AGCATGCTTAGGCGTGGCTTTGCCCCCTTATGGCGCGGGCGCACCAACTTATGCAGTTCGTTTTACGATCTTATCGTTTT
CTCTTTTAGAAAAAGAAAATTCTACCTATAGGGCGGAATTTGCACTAGGCTATGATATTAGCGTGAAAGGCGATTCGCAT
TCTGGAGTGATCATTAAGCATGAAAATATTTCTAGCTTGGAAAACAAAACGACCAAAACGACTAAAGATGGCAATCAAGA
TTTTCAAGAAAGCGCGATACAATCCCTCCAACATGTAAGCGAACAAGCGATGCAAGAAGCGATTTCCTTGATTAAAAAAG
CGGTTGAAGCGCAAAGCGTAAGCCCGTTAAAAAAATAA

Upstream 100 bases:

>100_bases
GCTTGAGAAACATTGATAATTTTGTGGAAAAAGGCTCTGCTTTGATAGACAAATTTGACGCTAACCCCTATAAAACGATT
TTTGGAGAAAGGAAATAATC

Downstream 100 bases:

>100_bases
AACATAAGGAGGAATTGTTTGAATTTACGATTGGCTGGAGCAAGCGTTTTAACGGCTTGTGTCTTTTCTGGGTGTTTTTT
TTTAAAAATGTTTGATAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MRATAIKIFSLSSALALLLQGCLSINLKQMLPEIRTYDLNASSFEITQCPKPLTEVRLISILSADLFNTKEIVFKAKDGQ
ITHGKHQKWIDLPRNMLKTMFMQEAQKACLGVALPPYGAGAPTYAVRFTILSFSLLEKENSTYRAEFALGYDISVKGDSH
SGVIIKHENISSLENKTTKTTKDGNQDFQESAIQSLQHVSEQAMQEAISLIKKAVEAQSVSPLKK

Sequences:

>Translated_225_residues
MRATAIKIFSLSSALALLLQGCLSINLKQMLPEIRTYDLNASSFEITQCPKPLTEVRLISILSADLFNTKEIVFKAKDGQ
ITHGKHQKWIDLPRNMLKTMFMQEAQKACLGVALPPYGAGAPTYAVRFTILSFSLLEKENSTYRAEFALGYDISVKGDSH
SGVIIKHENISSLENKTTKTTKDGNQDFQESAIQSLQHVSEQAMQEAISLIKKAVEAQSVSPLKK
>Mature_225_residues
MRATAIKIFSLSSALALLLQGCLSINLKQMLPEIRTYDLNASSFEITQCPKPLTEVRLISILSADLFNTKEIVFKAKDGQ
ITHGKHQKWIDLPRNMLKTMFMQEAQKACLGVALPPYGAGAPTYAVRFTILSFSLLEKENSTYRAEFALGYDISVKGDSH
SGVIIKHENISSLENKTTKTTKDGNQDFQESAIQSLQHVSEQAMQEAISLIKKAVEAQSVSPLKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24921; Mature: 24921

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRATAIKIFSLSSALALLLQGCLSINLKQMLPEIRTYDLNASSFEITQCPKPLTEVRLIS
CCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCEECCCCCCHHHHHHHHH
ILSADLFNTKEIVFKAKDGQITHGKHQKWIDLPRNMLKTMFMQEAQKACLGVALPPYGAG
HHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
APTYAVRFTILSFSLLEKENSTYRAEFALGYDISVKGDSHSGVIIKHENISSLENKTTKT
CCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCEEEEECCHHHHHHCCCCC
TKDGNQDFQESAIQSLQHVSEQAMQEAISLIKKAVEAQSVSPLKK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRATAIKIFSLSSALALLLQGCLSINLKQMLPEIRTYDLNASSFEITQCPKPLTEVRLIS
CCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCEECCCCCCHHHHHHHHH
ILSADLFNTKEIVFKAKDGQITHGKHQKWIDLPRNMLKTMFMQEAQKACLGVALPPYGAG
HHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
APTYAVRFTILSFSLLEKENSTYRAEFALGYDISVKGDSHSGVIIKHENISSLENKTTKT
CCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCEEEEECCHHHHHHCCCCC
TKDGNQDFQESAIQSLQHVSEQAMQEAISLIKKAVEAQSVSPLKK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA