| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is ppk [H]
Identifier: 188527245
GI number: 188527245
Start: 429911
End: 431938
Strand: Reverse
Name: ppk [H]
Synonym: HPSH_02260
Alternate gene names: 188527245
Gene position: 431938-429911 (Counterclockwise)
Preceding gene: 188527246
Following gene: 188527244
Centisome position: 26.85
GC content: 39.69
Gene sequence:
>2028_bases TTGAATCGTTTCTTTAACCGAGAGCTTTCATGGTTAGCTTTTAACACAAGAGTTTTAAACGAAGCCAAAGATGAGAGCTT GCCTTTATTAGAGCGCTTGAAATTTTTAGCCATTTATGACACGAATTTAGACGAATTTTACATGATAAGAGTGGCAGGGC TTAAACAACTCTATGAGCATAAAATCGCCTCTAAAGGCATTGATGGCGCAAGCCCTGAAGAACAATTAGAAAAAATCAAG CATTATTTAGCGCATGAAATTGAAGAAAGGGAGTTAGAATTCCAAAAAATCCAAGCCCTACTCTTTAAAAAAGGGCTTTG TATCACCCCCTATAGTGAATTGAATTTGGAGCAAAAAGCTAAGGCTAAAACCTATTTTAAAGAGCAACTTTATGCGTTAG CTTTGCCTTTTAAGTTGGATTCTTCGCACACTTTCCCGCCTTTAGCGAATTTGACTTTCGCGCTTTTTGCCCGCATTAAA GACAAAGAAACCCAAACCACCTCCTATGCGCTCATCAAACTCCCCTCTTTTATCTTCCGTTTTGTGGAGCTAGAAAAAGG CTTGTTTGTGCTGGCTGAAGAAATCGTAGAAGCGCATTTAGAAGAATTGTTTTTAGAGCATGAGATTTTAGATTGCATGG CGTTTAGGGTAACTTGCGATGCGGATATTGCCATCGCTGAAGATGAAGCGCATGATTATGCGGATTTGATGAGTAAGAGT TTAAGGAAACGCAATCAAGGCGAAATCGTGCGCTTGCAAACCCAAAAAGGGAGTCAAGAGCTTTTTAAAACCCTTTTAGC GTCTTTAAGGAGTTTTCAAACCCACTCTTACAAAAAGCACAAACTCACCGGCATGCATGCCTATAAAAGCGCGATCATGC TCAATTTAGGGGATTTGTGGGAATTGGTCAATCATAGCGATTTTAAAGCGCTTAAATCGCCCAATTTCACGCCCAAAATC CACCCTCATTTCAATGAAAACGATCTCTTTAAATCCATAGAAAAGCAAGATCTGTTGCTGTTCCACCCGTATGAAAGTTT TGAGCCTGTGGTTGATCTAATAGAGCAAGCCGCTAGCGATCCCACCACCCTTTCTATCAAAATGACGCTTTATCGTGTGG GCAAGCATTCCCCCATTGTCAAAGCCTTAATTGAAGCGGCGAGCAAGATTCAAGTGAGCGTTTTAGTGGAATTAAAAGCG CGTTTTGATGAAGAGAGCAATCTGCATTGGGCAAAAGCTTTAGAAAGGGCGGGCGCATTAGTCGTTTATGGCGTTTTCAA ACTCAAAGTGCATGCTAAAATGCTGGTGATCACTAAAAAAACAGACAACCAATTACGCCATTTCACCCATTTAAGCACGG GCAATTACAACCCTTTGAGCGCTAAAATCTATACCGATGTGAGTTTTTTTAGCGCTAAAAATGAAATCGCTAACGACATT ATCAAGCTTTTCCATTCCTTGCTCACTAGCAGCGCGACTAACAGCGCATTAGAAACGCTTTTTATGGCGCCCAAACAGAT CAAGCCTAAAATCATTGAACTCATTCAAAATGAAATGAATCACCAACAGGAAGGCTATATCATTTTAAAAGCCAACGCCC TAGTGGATAGCGAAATCATTGAATGGCTCTATCAAGCCTCTCAAAAAGGGGTTAAAATTGATCTCATTATTAGAGGGATT TGCTGTTTAAAGCCTCAAGTCAAGGGATTGAGCGAAAACATCAGGGTGTATTCTATTGTGGGGAAATATTTAGAACATGC GCGCATTTATTATTTTAAACATGAGAATATCTATTTTTCTAGCGCGGATTTAATGCCCAGAAATTTAGAAAGGCGCGTGG AATTGCTTGTCCCGGCCACAAACCCAAAGATCGCTAATAAATTGTTGCATATTTTAGAAATCCAATTGAAAGACACCCTA AAACGCTATGAGTTAAATTCTAAAGGCCGTTACATTAAAGTTTCAAACCCTAACGATCCTTTAAATTCACAAGATTACTT TGAAAAGCAAGCCCTTAAAACCTTTTAA
Upstream 100 bases:
>100_bases GTGGGTTTGAATCCCGCTACTCCGACCATAACTTTTTAAAAAAGCTTCAATTATTATCATTTCATTATATAATCACACCA TATGATTTAAAGGATTTCTA
Downstream 100 bases:
>100_bases GGGTTATCGTTCAAATCATAAAAGATAAGGATTTAAATGCTTTATTCGTTATTAAAAAAATATCTTTTTAGCCTAGACGC TGAAGACGCGCATGAAAAAG
Product: polyphosphate kinase
Products: NA
Alternate protein names: ATP-polyphosphate phosphotransferase; Polyphosphoric acid kinase [H]
Number of amino acids: Translated: 675; Mature: 675
Protein sequence:
>675_residues MNRFFNRELSWLAFNTRVLNEAKDESLPLLERLKFLAIYDTNLDEFYMIRVAGLKQLYEHKIASKGIDGASPEEQLEKIK HYLAHEIEERELEFQKIQALLFKKGLCITPYSELNLEQKAKAKTYFKEQLYALALPFKLDSSHTFPPLANLTFALFARIK DKETQTTSYALIKLPSFIFRFVELEKGLFVLAEEIVEAHLEELFLEHEILDCMAFRVTCDADIAIAEDEAHDYADLMSKS LRKRNQGEIVRLQTQKGSQELFKTLLASLRSFQTHSYKKHKLTGMHAYKSAIMLNLGDLWELVNHSDFKALKSPNFTPKI HPHFNENDLFKSIEKQDLLLFHPYESFEPVVDLIEQAASDPTTLSIKMTLYRVGKHSPIVKALIEAASKIQVSVLVELKA RFDEESNLHWAKALERAGALVVYGVFKLKVHAKMLVITKKTDNQLRHFTHLSTGNYNPLSAKIYTDVSFFSAKNEIANDI IKLFHSLLTSSATNSALETLFMAPKQIKPKIIELIQNEMNHQQEGYIILKANALVDSEIIEWLYQASQKGVKIDLIIRGI CCLKPQVKGLSENIRVYSIVGKYLEHARIYYFKHENIYFSSADLMPRNLERRVELLVPATNPKIANKLLHILEIQLKDTL KRYELNSKGRYIKVSNPNDPLNSQDYFEKQALKTF
Sequences:
>Translated_675_residues MNRFFNRELSWLAFNTRVLNEAKDESLPLLERLKFLAIYDTNLDEFYMIRVAGLKQLYEHKIASKGIDGASPEEQLEKIK HYLAHEIEERELEFQKIQALLFKKGLCITPYSELNLEQKAKAKTYFKEQLYALALPFKLDSSHTFPPLANLTFALFARIK DKETQTTSYALIKLPSFIFRFVELEKGLFVLAEEIVEAHLEELFLEHEILDCMAFRVTCDADIAIAEDEAHDYADLMSKS LRKRNQGEIVRLQTQKGSQELFKTLLASLRSFQTHSYKKHKLTGMHAYKSAIMLNLGDLWELVNHSDFKALKSPNFTPKI HPHFNENDLFKSIEKQDLLLFHPYESFEPVVDLIEQAASDPTTLSIKMTLYRVGKHSPIVKALIEAASKIQVSVLVELKA RFDEESNLHWAKALERAGALVVYGVFKLKVHAKMLVITKKTDNQLRHFTHLSTGNYNPLSAKIYTDVSFFSAKNEIANDI IKLFHSLLTSSATNSALETLFMAPKQIKPKIIELIQNEMNHQQEGYIILKANALVDSEIIEWLYQASQKGVKIDLIIRGI CCLKPQVKGLSENIRVYSIVGKYLEHARIYYFKHENIYFSSADLMPRNLERRVELLVPATNPKIANKLLHILEIQLKDTL KRYELNSKGRYIKVSNPNDPLNSQDYFEKQALKTF >Mature_675_residues MNRFFNRELSWLAFNTRVLNEAKDESLPLLERLKFLAIYDTNLDEFYMIRVAGLKQLYEHKIASKGIDGASPEEQLEKIK HYLAHEIEERELEFQKIQALLFKKGLCITPYSELNLEQKAKAKTYFKEQLYALALPFKLDSSHTFPPLANLTFALFARIK DKETQTTSYALIKLPSFIFRFVELEKGLFVLAEEIVEAHLEELFLEHEILDCMAFRVTCDADIAIAEDEAHDYADLMSKS LRKRNQGEIVRLQTQKGSQELFKTLLASLRSFQTHSYKKHKLTGMHAYKSAIMLNLGDLWELVNHSDFKALKSPNFTPKI HPHFNENDLFKSIEKQDLLLFHPYESFEPVVDLIEQAASDPTTLSIKMTLYRVGKHSPIVKALIEAASKIQVSVLVELKA RFDEESNLHWAKALERAGALVVYGVFKLKVHAKMLVITKKTDNQLRHFTHLSTGNYNPLSAKIYTDVSFFSAKNEIANDI IKLFHSLLTSSATNSALETLFMAPKQIKPKIIELIQNEMNHQQEGYIILKANALVDSEIIEWLYQASQKGVKIDLIIRGI CCLKPQVKGLSENIRVYSIVGKYLEHARIYYFKHENIYFSSADLMPRNLERRVELLVPATNPKIANKLLHILEIQLKDTL KRYELNSKGRYIKVSNPNDPLNSQDYFEKQALKTF
Specific function: Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) [H]
COG id: COG0855
COG function: function code P; Polyphosphate kinase
Gene ontology:
Cell location: Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polyphosphate kinase family [H]
Homologues:
Organism=Escherichia coli, GI1788847, Length=687, Percent_Identity=32.3144104803493, Blast_Score=349, Evalue=4e-97,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003414 [H]
Pfam domain/function: PF02503 PP_kinase [H]
EC number: =2.7.4.1 [H]
Molecular weight: Translated: 77853; Mature: 77853
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRFFNRELSWLAFNTRVLNEAKDESLPLLERLKFLAIYDTNLDEFYMIRVAGLKQLYEH CCCCCCCCCCEEEEHHHHHHHCCCCCCCHHHHCEEEEEEECCCCCEEEHHHHHHHHHHHH KIASKGIDGASPEEQLEKIKHYLAHEIEERELEFQKIQALLFKKGLCITPYSELNLEQKA HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHCCCHHHH KAKTYFKEQLYALALPFKLDSSHTFPPLANLTFALFARIKDKETQTTSYALIKLPSFIFR HHHHHHHHHHHHHEECEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH FVELEKGLFVLAEEIVEAHLEELFLEHEILDCMAFRVTCDADIAIAEDEAHDYADLMSKS HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEECCCHHHHHHHHHHH LRKRNQGEIVRLQTQKGSQELFKTLLASLRSFQTHSYKKHKLTGMHAYKSAIMLNLGDLW HHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCHHHHH ELVNHSDFKALKSPNFTPKIHPHFNENDLFKSIEKQDLLLFHPYESFEPVVDLIEQAASD HHHCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCC PTTLSIKMTLYRVGKHSPIVKALIEAASKIQVSVLVELKARFDEESNLHWAKALERAGAL CCEEEEEEEEEECCCCCHHHHHHHHHHHHEEEEEEEEHHHHCCCCCCCHHHHHHHHCCCE VVYGVFKLKVHAKMLVITKKTDNQLRHFTHLSTGNYNPLSAKIYTDVSFFSAKNEIANDI EEEEEEEEEEEEEEEEEEECCCHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHH IKLFHSLLTSSATNSALETLFMAPKQIKPKIIELIQNEMNHQQEGYIILKANALVDSEII HHHHHHHHHCCCCHHHHHHHHHCCHHCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH EWLYQASQKGVKIDLIIRGICCLKPQVKGLSENIRVYSIVGKYLEHARIYYFKHENIYFS HHHHHHHCCCCEEEEEEECHHHCCCHHCCCCCCCCHHHHHHHHHHCCEEEEEEECCEEEE SADLMPRNLERRVELLVPATNPKIANKLLHILEIQLKDTLKRYELNSKGRYIKVSNPNDP CCCCCCCCHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC LNSQDYFEKQALKTF CCCHHHHHHHHHHCC >Mature Secondary Structure MNRFFNRELSWLAFNTRVLNEAKDESLPLLERLKFLAIYDTNLDEFYMIRVAGLKQLYEH CCCCCCCCCCEEEEHHHHHHHCCCCCCCHHHHCEEEEEEECCCCCEEEHHHHHHHHHHHH KIASKGIDGASPEEQLEKIKHYLAHEIEERELEFQKIQALLFKKGLCITPYSELNLEQKA HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHCCCHHHH KAKTYFKEQLYALALPFKLDSSHTFPPLANLTFALFARIKDKETQTTSYALIKLPSFIFR HHHHHHHHHHHHHEECEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH FVELEKGLFVLAEEIVEAHLEELFLEHEILDCMAFRVTCDADIAIAEDEAHDYADLMSKS HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEECCCHHHHHHHHHHH LRKRNQGEIVRLQTQKGSQELFKTLLASLRSFQTHSYKKHKLTGMHAYKSAIMLNLGDLW HHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCHHHHH ELVNHSDFKALKSPNFTPKIHPHFNENDLFKSIEKQDLLLFHPYESFEPVVDLIEQAASD HHHCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCC PTTLSIKMTLYRVGKHSPIVKALIEAASKIQVSVLVELKARFDEESNLHWAKALERAGAL CCEEEEEEEEEECCCCCHHHHHHHHHHHHEEEEEEEEHHHHCCCCCCCHHHHHHHHCCCE VVYGVFKLKVHAKMLVITKKTDNQLRHFTHLSTGNYNPLSAKIYTDVSFFSAKNEIANDI EEEEEEEEEEEEEEEEEEECCCHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHH IKLFHSLLTSSATNSALETLFMAPKQIKPKIIELIQNEMNHQQEGYIILKANALVDSEII HHHHHHHHHCCCCHHHHHHHHHCCHHCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH EWLYQASQKGVKIDLIIRGICCLKPQVKGLSENIRVYSIVGKYLEHARIYYFKHENIYFS HHHHHHHCCCCEEEEEEECHHHCCCHHCCCCCCCCHHHHHHHHHHCCEEEEEEECCEEEE SADLMPRNLERRVELLVPATNPKIANKLLHILEIQLKDTLKRYELNSKGRYIKVSNPNDP CCCCCCCCHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC LNSQDYFEKQALKTF CCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]