| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186474851
Identifier: 186474851
GI number: 186474851
Start: 90294
End: 91055
Strand: Direct
Name: 186474851
Synonym: Bphy_0080
Alternate gene names: NA
Gene position: 90294-91055 (Clockwise)
Preceding gene: 186474849
Following gene: 186474853
Centisome position: 2.6
GC content: 63.12
Gene sequence:
>762_bases ATGTCAGTCCATTCGAAGAAAGAGCAGATTCAGGTGCTGCGCGAGCAGGGTTTTGTCGTGGTGCCGAGTCTCGTCACGCC CGAGCGCTGCGACGAGATGAAACAGATCGCGCGGCAGCAGTTGCAGATCGCGGCCGACCCGGTCGAATTCGAAGCGGACC TGCGCTATCCTGGCGCGCCGGAGTCGAAAGAAGCGCCCGGCGGTCATACCGTGCGGCGTCTGCTGGATGCTTATGCACGT CATCCGCGGTTTGCGGAATGGGGGACGGCGCCGGAAATCCGCGGCTGGATGGAACTGTATTTCGGCGAAGAGCCGCGCCT GTCGCGCGCGCATCACAACTGCATGATGACCAAGCATCCCGCGTACGGCAGCCTGACGGGCTGGCATCGCGATGTGCGCT ACTGGTCATTCGAGCGCGACGATCTGGTGTCGGTGTGGCTCGCGCTCGGCGACGAAATCGTCGATAACGGCGCGCTCTGG TTCGTGCCGGGTTCGCATGCCGCAGCGTTCACGTCGGATCGCTTCGACGAAGCGAAATTCTTCCGCTCGGACGTGCCGGA GAATGCCGCGCTGATCCAGAAAGCGGTGTCGCCCGCGCTGAAGGCGGGCGACGTGGTCTTCTTCCACTGCAACACGCTGC ATTCGGCGGGGAAGAATCTGTCGGAGCAGGTGAAGTTCTCGCTCGTCTTCACCTATCACGGCGCGAGCAATGTGCCGCTG CCGGGTTCGCGCTCTGCGTCGAAGCCCGAAGTCGCGTTCTGA
Upstream 100 bases:
>100_bases TTCGCGCGAGGCGCAACGCAAGACCGGACGCCGATCCGATCGTGCCCGTTTTACAATGGGAAACCGGTTGTCGAACGAAC GCTAGCTGAACGGAACGTCC
Downstream 100 bases:
>100_bases ACCCCTTGTCCCGCCGCTGGCCGGGGCCGCTATGCGGCGGCGCGTCAGCGCCTGTTCGACGCGAGTCCGATCAGGCCTGC GAGCGTCGCAACGATCCCGC
Product: phytanoyl-CoA dioxygenase
Products: NA
Alternate protein names: Deoxygenase; Hypophosphite Dioxygenase; Potassium Channel Protein; Phytanoyl-CoA Deoxygenase Family Protein; Phytanoyl-CoA Dioxygenase Family Protein; Ectoine Hydroxylase; Phytanoyl-CoA Dioxygenase PhyH Family; Dioxygenase
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MSVHSKKEQIQVLREQGFVVVPSLVTPERCDEMKQIARQQLQIAADPVEFEADLRYPGAPESKEAPGGHTVRRLLDAYAR HPRFAEWGTAPEIRGWMELYFGEEPRLSRAHHNCMMTKHPAYGSLTGWHRDVRYWSFERDDLVSVWLALGDEIVDNGALW FVPGSHAAAFTSDRFDEAKFFRSDVPENAALIQKAVSPALKAGDVVFFHCNTLHSAGKNLSEQVKFSLVFTYHGASNVPL PGSRSASKPEVAF
Sequences:
>Translated_253_residues MSVHSKKEQIQVLREQGFVVVPSLVTPERCDEMKQIARQQLQIAADPVEFEADLRYPGAPESKEAPGGHTVRRLLDAYAR HPRFAEWGTAPEIRGWMELYFGEEPRLSRAHHNCMMTKHPAYGSLTGWHRDVRYWSFERDDLVSVWLALGDEIVDNGALW FVPGSHAAAFTSDRFDEAKFFRSDVPENAALIQKAVSPALKAGDVVFFHCNTLHSAGKNLSEQVKFSLVFTYHGASNVPL PGSRSASKPEVAF >Mature_252_residues SVHSKKEQIQVLREQGFVVVPSLVTPERCDEMKQIARQQLQIAADPVEFEADLRYPGAPESKEAPGGHTVRRLLDAYARH PRFAEWGTAPEIRGWMELYFGEEPRLSRAHHNCMMTKHPAYGSLTGWHRDVRYWSFERDDLVSVWLALGDEIVDNGALWF VPGSHAAAFTSDRFDEAKFFRSDVPENAALIQKAVSPALKAGDVVFFHCNTLHSAGKNLSEQVKFSLVFTYHGASNVPLP GSRSASKPEVAF
Specific function: Unknown
COG id: COG5285
COG function: function code Q; Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28408; Mature: 28277
Theoretical pI: Translated: 6.74; Mature: 6.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVHSKKEQIQVLREQGFVVVPSLVTPERCDEMKQIARQQLQIAADPVEFEADLRYPGAP CCCCCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC ESKEAPGGHTVRRLLDAYARHPRFAEWGTAPEIRGWMELYFGEEPRLSRAHHNCMMTKHP CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCEEECCC AYGSLTGWHRDVRYWSFERDDLVSVWLALGDEIVDNGALWFVPGSHAAAFTSDRFDEAKF CCCCCCCHHHCCEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCHHHHHH FRSDVPENAALIQKAVSPALKAGDVVFFHCNTLHSAGKNLSEQVKFSLVFTYHGASNVPL HHHCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHHEEEEEEEEECCCCCCCC PGSRSASKPEVAF CCCCCCCCCCCCC >Mature Secondary Structure SVHSKKEQIQVLREQGFVVVPSLVTPERCDEMKQIARQQLQIAADPVEFEADLRYPGAP CCCCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC ESKEAPGGHTVRRLLDAYARHPRFAEWGTAPEIRGWMELYFGEEPRLSRAHHNCMMTKHP CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCEEECCC AYGSLTGWHRDVRYWSFERDDLVSVWLALGDEIVDNGALWFVPGSHAAAFTSDRFDEAKF CCCCCCCHHHCCEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCHHHHHH FRSDVPENAALIQKAVSPALKAGDVVFFHCNTLHSAGKNLSEQVKFSLVFTYHGASNVPL HHHCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHHEEEEEEEEECCCCCCCC PGSRSASKPEVAF CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA