| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is metK [H]
Identifier: 186474849
GI number: 186474849
Start: 88106
End: 89293
Strand: Direct
Name: metK [H]
Synonym: Bphy_0078
Alternate gene names: 186474849
Gene position: 88106-89293 (Clockwise)
Preceding gene: 186474839
Following gene: 186474851
Centisome position: 2.53
GC content: 63.64
Gene sequence:
>1188_bases GTGGCTAACGATTACCTCTTCACCTCCGAATCCGTCTCCGAAGGCCATCCGGACAAGGTCGCAGACCAGATTTCGGACGC TATCCTCGACGCGATCCTCGCCCAGGACAAATACTCGCGTGTTGCGGCCGAAACGCTGTGCAACACGGGTCTCGTCGTGC TGGCGGGTGAAATCACCACGACGGCAAACGTCGATTACATCCAGGTCGCGCGCGAAACCATCAAGCGCATCGGCTATGAC AACACCGACTACGGCATCGACTATCGCGGCTGCGCGGTGCTCGTCGCGTACGACAAGCAATCGCCGGACATCGCGCAAGG CGTCGACCGTGCGCACGACAACAATCTCGACCAGGGCGCCGGCGACCAGGGCCTGATGTTCGGCTATGCATGCGACGAAA CGCCCGAACTGATGCCGCTGCCGATCCACCTGTCGCACCGCCTCGTCGAGCGTCAGGCGAATCTGCGCCGCGACGGCCGT CTGCCCTGGTTGCGTCCGGATGCGAAGTCGCAGGTCACGATTCGCTACGTCGACGGCAAGCCGCACTCGATCGACACCGT CGTGCTGTCCACGCAGCACTCACCGGATATCGACCTCGGACAACTGCGCGAAGCCGTGATCGAAGAAATCATCAAGCCGA CGCTGCCCGCCGAACTGATCAAGGGCGACATCAAGTTCCTCGTGAACCCGACGGGCCGGTTCGTGATCGGCGGCCCGCAG GGCGATTGCGGTCTGACGGGCCGCAAAATTATCGTCGATACGTACGGCGGCGCGGCTCCGCACGGCGGCGGCGCGTTCTC GGGCAAGGATCCTTCGAAGGTCGACCGCTCGGCGGCGTATGCCGGCCGCTATGTTGCAAAGAACATCGTCGCAGCCGGCC TCGCATCGCGCGCGCTGATCCAGGTGTCGTACGCAATCGGCGTTGCACAGCCGACCTCGGTGATGGTCAACACGTTCGGC ACGGGCCGCGTGTCGGATGCGACGATCACACGTCTGGTTCAGGAACACTTCGACCTGCGTCCGAAGGGCATCATCCAGAT GCTGGATCTGTTGCGCCCAGTCTATGAAAAAACGGCCGCCTACGGCCACTTCGGCCGCGAGGAGCCGGAATTCTCGTGGG AAGCGACCGACAAGGCGCTCGCGCTGGCCGAAGCGGCTGGCACGGAGCCGGTTGCCGCTCTCGCCTGA
Upstream 100 bases:
>100_bases GATAGTCGCCCGGCGGTAAGGAATTCCGCTAAAGCGTCGCCGCTTCAGGCTCGAAGCAGGCTACGTGAAACTCAACCGTA ACCAACAAGGAGCCTGTAAC
Downstream 100 bases:
>100_bases ACGACGCTGTGAGCGATACGCGCGGCCGAATGTCGCGCGGCATCGATCTCCAGGCCGCAAAGAAAAACGCCCTGCATGCG AACGCATGCGGGGCGTTTTT
Product: S-adenosylmethionine synthetase
Products: NA
Alternate protein names: AdoMet synthase; MAT; Methionine adenosyltransferase [H]
Number of amino acids: Translated: 395; Mature: 394
Protein sequence:
>395_residues MANDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANVDYIQVARETIKRIGYD NTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNLDQGAGDQGLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGR LPWLRPDAKSQVTIRYVDGKPHSIDTVVLSTQHSPDIDLGQLREAVIEEIIKPTLPAELIKGDIKFLVNPTGRFVIGGPQ GDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAQPTSVMVNTFG TGRVSDATITRLVQEHFDLRPKGIIQMLDLLRPVYEKTAAYGHFGREEPEFSWEATDKALALAEAAGTEPVAALA
Sequences:
>Translated_395_residues MANDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANVDYIQVARETIKRIGYD NTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNLDQGAGDQGLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGR LPWLRPDAKSQVTIRYVDGKPHSIDTVVLSTQHSPDIDLGQLREAVIEEIIKPTLPAELIKGDIKFLVNPTGRFVIGGPQ GDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAQPTSVMVNTFG TGRVSDATITRLVQEHFDLRPKGIIQMLDLLRPVYEKTAAYGHFGREEPEFSWEATDKALALAEAAGTEPVAALA >Mature_394_residues ANDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANVDYIQVARETIKRIGYDN TDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNLDQGAGDQGLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRL PWLRPDAKSQVTIRYVDGKPHSIDTVVLSTQHSPDIDLGQLREAVIEEIIKPTLPAELIKGDIKFLVNPTGRFVIGGPQG DCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAQPTSVMVNTFGT GRVSDATITRLVQEHFDLRPKGIIQMLDLLRPVYEKTAAYGHFGREEPEFSWEATDKALALAEAAGTEPVAALA
Specific function: Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the e
COG id: COG0192
COG function: function code H; S-adenosylmethionine synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AdoMet synthase family [H]
Homologues:
Organism=Homo sapiens, GI4557737, Length=380, Percent_Identity=58.1578947368421, Blast_Score=428, Evalue=1e-120, Organism=Homo sapiens, GI5174529, Length=380, Percent_Identity=57.1052631578947, Blast_Score=422, Evalue=1e-118, Organism=Escherichia coli, GI1789311, Length=383, Percent_Identity=69.9738903394256, Blast_Score=535, Evalue=1e-153, Organism=Caenorhabditis elegans, GI17538498, Length=376, Percent_Identity=59.0425531914894, Blast_Score=427, Evalue=1e-120, Organism=Caenorhabditis elegans, GI25145633, Length=380, Percent_Identity=58.6842105263158, Blast_Score=427, Evalue=1e-120, Organism=Caenorhabditis elegans, GI17538494, Length=376, Percent_Identity=58.5106382978723, Blast_Score=427, Evalue=1e-120, Organism=Caenorhabditis elegans, GI17551082, Length=401, Percent_Identity=55.6109725685786, Blast_Score=423, Evalue=1e-119, Organism=Caenorhabditis elegans, GI32565905, Length=376, Percent_Identity=52.9255319148936, Blast_Score=361, Evalue=1e-100, Organism=Caenorhabditis elegans, GI32565911, Length=328, Percent_Identity=57.6219512195122, Blast_Score=359, Evalue=2e-99, Organism=Caenorhabditis elegans, GI25145635, Length=332, Percent_Identity=56.9277108433735, Blast_Score=356, Evalue=9e-99, Organism=Caenorhabditis elegans, GI32565903, Length=301, Percent_Identity=57.1428571428571, Blast_Score=323, Evalue=1e-88, Organism=Caenorhabditis elegans, GI32565909, Length=84, Percent_Identity=59.5238095238095, Blast_Score=109, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6320710, Length=379, Percent_Identity=56.7282321899736, Blast_Score=424, Evalue=1e-119, Organism=Saccharomyces cerevisiae, GI6323209, Length=378, Percent_Identity=57.1428571428571, Blast_Score=421, Evalue=1e-118, Organism=Drosophila melanogaster, GI45552159, Length=376, Percent_Identity=54.7872340425532, Blast_Score=387, Evalue=1e-108, Organism=Drosophila melanogaster, GI24580529, Length=376, Percent_Identity=54.7872340425532, Blast_Score=387, Evalue=1e-108, Organism=Drosophila melanogaster, GI24580537, Length=376, Percent_Identity=54.7872340425532, Blast_Score=387, Evalue=1e-108, Organism=Drosophila melanogaster, GI24580533, Length=376, Percent_Identity=54.7872340425532, Blast_Score=387, Evalue=1e-108, Organism=Drosophila melanogaster, GI24580535, Length=376, Percent_Identity=54.7872340425532, Blast_Score=387, Evalue=1e-108, Organism=Drosophila melanogaster, GI24580531, Length=376, Percent_Identity=54.7872340425532, Blast_Score=387, Evalue=1e-108, Organism=Drosophila melanogaster, GI24580527, Length=374, Percent_Identity=54.2780748663102, Blast_Score=382, Evalue=1e-106, Organism=Drosophila melanogaster, GI24580525, Length=374, Percent_Identity=54.2780748663102, Blast_Score=382, Evalue=1e-106, Organism=Drosophila melanogaster, GI24580541, Length=375, Percent_Identity=52, Blast_Score=358, Evalue=3e-99, Organism=Drosophila melanogaster, GI24580539, Length=119, Percent_Identity=56.3025210084034, Blast_Score=134, Evalue=1e-31,
Paralogues:
None
Copy number: 7,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022631 - InterPro: IPR022630 - InterPro: IPR022629 - InterPro: IPR022628 - InterPro: IPR002133 - InterPro: IPR022636 [H]
Pfam domain/function: PF02773 S-AdoMet_synt_C; PF02772 S-AdoMet_synt_M; PF00438 S-AdoMet_synt_N [H]
EC number: =2.5.1.6 [H]
Molecular weight: Translated: 42605; Mature: 42473
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: PS00376 ADOMET_SYNTHETASE_1 ; PS00377 ADOMET_SYNTHETASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITT CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEE TANVDYIQVARETIKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNLDQGA CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCC GDQGLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRLPWLRPDAKSQVTIRYVDGK CCCCEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCC PHSIDTVVLSTQHSPDIDLGQLREAVIEEIIKPTLPAELIKGDIKFLVNPTGRFVIGGPQ CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCEEEEECCCCCEEEECCC GDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALI CCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE QVSYAIGVAQPTSVMVNTFGTGRVSDATITRLVQEHFDLRPKGIIQMLDLLRPVYEKTAA EEHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH YGHFGREEPEFSWEATDKALALAEAAGTEPVAALA HCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHCC >Mature Secondary Structure ANDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITT CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEE TANVDYIQVARETIKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNLDQGA CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCC GDQGLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRLPWLRPDAKSQVTIRYVDGK CCCCEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCC PHSIDTVVLSTQHSPDIDLGQLREAVIEEIIKPTLPAELIKGDIKFLVNPTGRFVIGGPQ CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCEEEEECCCCCEEEECCC GDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALI CCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE QVSYAIGVAQPTSVMVNTFGTGRVSDATITRLVQEHFDLRPKGIIQMLDLLRPVYEKTAA EEHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH YGHFGREEPEFSWEATDKALALAEAAGTEPVAALA HCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA