| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311542
Identifier: 18311542
GI number: 18311542
Start: 2930754
End: 2932070
Strand: Reverse
Name: 18311542
Synonym: CPE2560
Alternate gene names: NA
Gene position: 2932070-2930754 (Counterclockwise)
Preceding gene: 18311543
Following gene: 18311540
Centisome position: 96.72
GC content: 32.35
Gene sequence:
>1317_bases ATGGCATTAGGTGGATTAAAAGTTCAATGTTTTAGTGAACAAAGGAGATATATACCTATTGATAAATGTAAGGTTAAAAT AACACCAACAGGAGAAGATGGTGTGGCTGTAGGAGATACTATAGAATTATATACAGATGATACTGGAAGCACTGACACTA TAGAATTAGATGCACCACCAATAGAAAATTCTAATCAACCAGGTACGATTCCTTATAGTTTTGCAGAGGTTATTGTTGAA AGAGAAGGATTTTTACCTGTAGCAGTAAATGGAGTACAAATCTATCCTTCAAGAATTGCTCTTCAAAATGTAAACTTACC TGAGACTAGAGGATATTATAGACAAGAGGAAGTTATTGATATACAACCTAATAGATTAGTTGGAAATTTCCCACCAAAGA TACCTGAAGCAGAGGAAAAGGAACTTCCACCACCAAAGGGAACAGTGGTTTTACCAGAGCCTGTAGTTCCAGAGTATATA GTTGTTCATAATGGTAGACCAAATGATAATTCAGTAGCCAATTATAAGGTTAATTACAAGGACTATATAAAAAATGTTGC CTGCTGTGAAATTTTTTCAACGTGGTCTGAGAATACTATAAGAGCTAATGTTTATGCCATAATATCATTTACTTTAAATA GAATATATACTGAATGGTATAGAGGAAAAGGTAAGAATTTTGATATAACTAATTCAACTGCTTTTGACCATGCTTTTAGT TATGGAAGAAATTTTTATGATAACATAAGTAGAATTGTAGATGAAATATTCTCAACATATATGAAAAGGTTCAATTCTAA GCAGCCTCTTTTAGCACAGTATTGTGATGGAATAAATGTACAATGTCCAGGTTGGATGACTCAATGGGGAAGTAAATATT TAGGTGATGAAGGAAAGGTTCCTTATGATATTTTAACCTCTTTTTATGGTGATGATTTAGAATTAAAGTCTGCTAAAAAA GTTAAGGGAAGTCCAAGATCATATCCAGGTTATACATTAAAAACGGGATATTCAGGAGAGCCTGTAAGAGTTATACAAGA ACAATTAAATGCTATTTCAAGAGCTTATCCTTTAATACCTAAGATTGCCGTTGATGGAAAATATGGTCCTAAAACTAGAG AAGCTGTAAAAACATTTCAAAAAATATTTAACCTTCCTCAAACAGGAGAGGTAGATTATGCAACATGGTATAAAATATCA GATGTCTATGTTGCAGTAACAAAAATAGCAGAGCTTAGATCAAGTGTTGAGAAGAAGATATTTTATCCACCAACAATAAT GGATAGACGTGAAAATGTACCAAAGATAATTTATTAA
Upstream 100 bases:
>100_bases AAAATAATTTTGATTATATTTTAATTACAAATACTTATTAACAAAATAGATATTAATCTCATAAACTATATGGTATTAAT TTATTATTAGGAGAAAGTAT
Downstream 100 bases:
>100_bases ATATTAAAGCTGAGCAAGTTATATAATTTGCTCAGCTTTTACTTTTTATCTTTATTTTTTTAATTTAAAAAAGTAGAAGT AAATACATTGAGCTATAAAT
Product: spore cortex-lytic enzyme SleC
Products: NA
Alternate protein names: Spore Cortex-Lytic Pre-Pro-Form; Spore Peptidoglycan Hydrolase; Stage II Sporulation D Domain-Containing Protein; Spore Cortex-Lytic Protein
Number of amino acids: Translated: 438; Mature: 437
Protein sequence:
>438_residues MALGGLKVQCFSEQRRYIPIDKCKVKITPTGEDGVAVGDTIELYTDDTGSTDTIELDAPPIENSNQPGTIPYSFAEVIVE REGFLPVAVNGVQIYPSRIALQNVNLPETRGYYRQEEVIDIQPNRLVGNFPPKIPEAEEKELPPPKGTVVLPEPVVPEYI VVHNGRPNDNSVANYKVNYKDYIKNVACCEIFSTWSENTIRANVYAIISFTLNRIYTEWYRGKGKNFDITNSTAFDHAFS YGRNFYDNISRIVDEIFSTYMKRFNSKQPLLAQYCDGINVQCPGWMTQWGSKYLGDEGKVPYDILTSFYGDDLELKSAKK VKGSPRSYPGYTLKTGYSGEPVRVIQEQLNAISRAYPLIPKIAVDGKYGPKTREAVKTFQKIFNLPQTGEVDYATWYKIS DVYVAVTKIAELRSSVEKKIFYPPTIMDRRENVPKIIY
Sequences:
>Translated_438_residues MALGGLKVQCFSEQRRYIPIDKCKVKITPTGEDGVAVGDTIELYTDDTGSTDTIELDAPPIENSNQPGTIPYSFAEVIVE REGFLPVAVNGVQIYPSRIALQNVNLPETRGYYRQEEVIDIQPNRLVGNFPPKIPEAEEKELPPPKGTVVLPEPVVPEYI VVHNGRPNDNSVANYKVNYKDYIKNVACCEIFSTWSENTIRANVYAIISFTLNRIYTEWYRGKGKNFDITNSTAFDHAFS YGRNFYDNISRIVDEIFSTYMKRFNSKQPLLAQYCDGINVQCPGWMTQWGSKYLGDEGKVPYDILTSFYGDDLELKSAKK VKGSPRSYPGYTLKTGYSGEPVRVIQEQLNAISRAYPLIPKIAVDGKYGPKTREAVKTFQKIFNLPQTGEVDYATWYKIS DVYVAVTKIAELRSSVEKKIFYPPTIMDRRENVPKIIY >Mature_437_residues ALGGLKVQCFSEQRRYIPIDKCKVKITPTGEDGVAVGDTIELYTDDTGSTDTIELDAPPIENSNQPGTIPYSFAEVIVER EGFLPVAVNGVQIYPSRIALQNVNLPETRGYYRQEEVIDIQPNRLVGNFPPKIPEAEEKELPPPKGTVVLPEPVVPEYIV VHNGRPNDNSVANYKVNYKDYIKNVACCEIFSTWSENTIRANVYAIISFTLNRIYTEWYRGKGKNFDITNSTAFDHAFSY GRNFYDNISRIVDEIFSTYMKRFNSKQPLLAQYCDGINVQCPGWMTQWGSKYLGDEGKVPYDILTSFYGDDLELKSAKKV KGSPRSYPGYTLKTGYSGEPVRVIQEQLNAISRAYPLIPKIAVDGKYGPKTREAVKTFQKIFNLPQTGEVDYATWYKISD VYVAVTKIAELRSSVEKKIFYPPTIMDRRENVPKIIY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49654; Mature: 49523
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALGGLKVQCFSEQRRYIPIDKCKVKITPTGEDGVAVGDTIELYTDDTGSTDTIELDAPP CCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCEEECCEEEEEECCCCCCCEEEECCCC IENSNQPGTIPYSFAEVIVEREGFLPVAVNGVQIYPSRIALQNVNLPETRGYYRQEEVID CCCCCCCCCCCHHHHHHHHHCCCCEEEEECCEEEECCEEEEECCCCCCCCCCCCCCCEEE IQPNRLVGNFPPKIPEAEEKELPPPKGTVVLPEPVVPEYIVVHNGRPNDNSVANYKVNYK ECCCCEECCCCCCCCCCCHHCCCCCCCEEECCCCCCCCEEEEECCCCCCCCEEEEEECHH DYIKNVACCEIFSTWSENTIRANVYAIISFTLNRIYTEWYRGKGKNFDITNSTAFDHAFS HHHCHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH YGRNFYDNISRIVDEIFSTYMKRFNSKQPLLAQYCDGINVQCPGWMTQWGSKYLGDEGKV HCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEECCCHHHHHCHHHCCCCCCC PYDILTSFYGDDLELKSAKKVKGSPRSYPGYTLKTGYSGEPVRVIQEQLNAISRAYPLIP CHHHHHHHCCCCCEECCHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCC KIAVDGKYGPKTREAVKTFQKIFNLPQTGEVDYATWYKISDVYVAVTKIAELRSSVEKKI EEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHEE FYPPTIMDRRENVPKIIY ECCCCHHHHCCCCCCCCC >Mature Secondary Structure ALGGLKVQCFSEQRRYIPIDKCKVKITPTGEDGVAVGDTIELYTDDTGSTDTIELDAPP CCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCEEECCEEEEEECCCCCCCEEEECCCC IENSNQPGTIPYSFAEVIVEREGFLPVAVNGVQIYPSRIALQNVNLPETRGYYRQEEVID CCCCCCCCCCCHHHHHHHHHCCCCEEEEECCEEEECCEEEEECCCCCCCCCCCCCCCEEE IQPNRLVGNFPPKIPEAEEKELPPPKGTVVLPEPVVPEYIVVHNGRPNDNSVANYKVNYK ECCCCEECCCCCCCCCCCHHCCCCCCCEEECCCCCCCCEEEEECCCCCCCCEEEEEECHH DYIKNVACCEIFSTWSENTIRANVYAIISFTLNRIYTEWYRGKGKNFDITNSTAFDHAFS HHHCHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH YGRNFYDNISRIVDEIFSTYMKRFNSKQPLLAQYCDGINVQCPGWMTQWGSKYLGDEGKV HCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEECCCHHHHHCHHHCCCCCCC PYDILTSFYGDDLELKSAKKVKGSPRSYPGYTLKTGYSGEPVRVIQEQLNAISRAYPLIP CHHHHHHHCCCCCEECCHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCC KIAVDGKYGPKTREAVKTFQKIFNLPQTGEVDYATWYKISDVYVAVTKIAELRSSVEKKI EEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHEE FYPPTIMDRRENVPKIIY ECCCCHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA