Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

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The map label for this gene is 18311542

Identifier: 18311542

GI number: 18311542

Start: 2930754

End: 2932070

Strand: Reverse

Name: 18311542

Synonym: CPE2560

Alternate gene names: NA

Gene position: 2932070-2930754 (Counterclockwise)

Preceding gene: 18311543

Following gene: 18311540

Centisome position: 96.72

GC content: 32.35

Gene sequence:

>1317_bases
ATGGCATTAGGTGGATTAAAAGTTCAATGTTTTAGTGAACAAAGGAGATATATACCTATTGATAAATGTAAGGTTAAAAT
AACACCAACAGGAGAAGATGGTGTGGCTGTAGGAGATACTATAGAATTATATACAGATGATACTGGAAGCACTGACACTA
TAGAATTAGATGCACCACCAATAGAAAATTCTAATCAACCAGGTACGATTCCTTATAGTTTTGCAGAGGTTATTGTTGAA
AGAGAAGGATTTTTACCTGTAGCAGTAAATGGAGTACAAATCTATCCTTCAAGAATTGCTCTTCAAAATGTAAACTTACC
TGAGACTAGAGGATATTATAGACAAGAGGAAGTTATTGATATACAACCTAATAGATTAGTTGGAAATTTCCCACCAAAGA
TACCTGAAGCAGAGGAAAAGGAACTTCCACCACCAAAGGGAACAGTGGTTTTACCAGAGCCTGTAGTTCCAGAGTATATA
GTTGTTCATAATGGTAGACCAAATGATAATTCAGTAGCCAATTATAAGGTTAATTACAAGGACTATATAAAAAATGTTGC
CTGCTGTGAAATTTTTTCAACGTGGTCTGAGAATACTATAAGAGCTAATGTTTATGCCATAATATCATTTACTTTAAATA
GAATATATACTGAATGGTATAGAGGAAAAGGTAAGAATTTTGATATAACTAATTCAACTGCTTTTGACCATGCTTTTAGT
TATGGAAGAAATTTTTATGATAACATAAGTAGAATTGTAGATGAAATATTCTCAACATATATGAAAAGGTTCAATTCTAA
GCAGCCTCTTTTAGCACAGTATTGTGATGGAATAAATGTACAATGTCCAGGTTGGATGACTCAATGGGGAAGTAAATATT
TAGGTGATGAAGGAAAGGTTCCTTATGATATTTTAACCTCTTTTTATGGTGATGATTTAGAATTAAAGTCTGCTAAAAAA
GTTAAGGGAAGTCCAAGATCATATCCAGGTTATACATTAAAAACGGGATATTCAGGAGAGCCTGTAAGAGTTATACAAGA
ACAATTAAATGCTATTTCAAGAGCTTATCCTTTAATACCTAAGATTGCCGTTGATGGAAAATATGGTCCTAAAACTAGAG
AAGCTGTAAAAACATTTCAAAAAATATTTAACCTTCCTCAAACAGGAGAGGTAGATTATGCAACATGGTATAAAATATCA
GATGTCTATGTTGCAGTAACAAAAATAGCAGAGCTTAGATCAAGTGTTGAGAAGAAGATATTTTATCCACCAACAATAAT
GGATAGACGTGAAAATGTACCAAAGATAATTTATTAA

Upstream 100 bases:

>100_bases
AAAATAATTTTGATTATATTTTAATTACAAATACTTATTAACAAAATAGATATTAATCTCATAAACTATATGGTATTAAT
TTATTATTAGGAGAAAGTAT

Downstream 100 bases:

>100_bases
ATATTAAAGCTGAGCAAGTTATATAATTTGCTCAGCTTTTACTTTTTATCTTTATTTTTTTAATTTAAAAAAGTAGAAGT
AAATACATTGAGCTATAAAT

Product: spore cortex-lytic enzyme SleC

Products: NA

Alternate protein names: Spore Cortex-Lytic Pre-Pro-Form; Spore Peptidoglycan Hydrolase; Stage II Sporulation D Domain-Containing Protein; Spore Cortex-Lytic Protein

Number of amino acids: Translated: 438; Mature: 437

Protein sequence:

>438_residues
MALGGLKVQCFSEQRRYIPIDKCKVKITPTGEDGVAVGDTIELYTDDTGSTDTIELDAPPIENSNQPGTIPYSFAEVIVE
REGFLPVAVNGVQIYPSRIALQNVNLPETRGYYRQEEVIDIQPNRLVGNFPPKIPEAEEKELPPPKGTVVLPEPVVPEYI
VVHNGRPNDNSVANYKVNYKDYIKNVACCEIFSTWSENTIRANVYAIISFTLNRIYTEWYRGKGKNFDITNSTAFDHAFS
YGRNFYDNISRIVDEIFSTYMKRFNSKQPLLAQYCDGINVQCPGWMTQWGSKYLGDEGKVPYDILTSFYGDDLELKSAKK
VKGSPRSYPGYTLKTGYSGEPVRVIQEQLNAISRAYPLIPKIAVDGKYGPKTREAVKTFQKIFNLPQTGEVDYATWYKIS
DVYVAVTKIAELRSSVEKKIFYPPTIMDRRENVPKIIY

Sequences:

>Translated_438_residues
MALGGLKVQCFSEQRRYIPIDKCKVKITPTGEDGVAVGDTIELYTDDTGSTDTIELDAPPIENSNQPGTIPYSFAEVIVE
REGFLPVAVNGVQIYPSRIALQNVNLPETRGYYRQEEVIDIQPNRLVGNFPPKIPEAEEKELPPPKGTVVLPEPVVPEYI
VVHNGRPNDNSVANYKVNYKDYIKNVACCEIFSTWSENTIRANVYAIISFTLNRIYTEWYRGKGKNFDITNSTAFDHAFS
YGRNFYDNISRIVDEIFSTYMKRFNSKQPLLAQYCDGINVQCPGWMTQWGSKYLGDEGKVPYDILTSFYGDDLELKSAKK
VKGSPRSYPGYTLKTGYSGEPVRVIQEQLNAISRAYPLIPKIAVDGKYGPKTREAVKTFQKIFNLPQTGEVDYATWYKIS
DVYVAVTKIAELRSSVEKKIFYPPTIMDRRENVPKIIY
>Mature_437_residues
ALGGLKVQCFSEQRRYIPIDKCKVKITPTGEDGVAVGDTIELYTDDTGSTDTIELDAPPIENSNQPGTIPYSFAEVIVER
EGFLPVAVNGVQIYPSRIALQNVNLPETRGYYRQEEVIDIQPNRLVGNFPPKIPEAEEKELPPPKGTVVLPEPVVPEYIV
VHNGRPNDNSVANYKVNYKDYIKNVACCEIFSTWSENTIRANVYAIISFTLNRIYTEWYRGKGKNFDITNSTAFDHAFSY
GRNFYDNISRIVDEIFSTYMKRFNSKQPLLAQYCDGINVQCPGWMTQWGSKYLGDEGKVPYDILTSFYGDDLELKSAKKV
KGSPRSYPGYTLKTGYSGEPVRVIQEQLNAISRAYPLIPKIAVDGKYGPKTREAVKTFQKIFNLPQTGEVDYATWYKISD
VYVAVTKIAELRSSVEKKIFYPPTIMDRRENVPKIIY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49654; Mature: 49523

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALGGLKVQCFSEQRRYIPIDKCKVKITPTGEDGVAVGDTIELYTDDTGSTDTIELDAPP
CCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCEEECCEEEEEECCCCCCCEEEECCCC
IENSNQPGTIPYSFAEVIVEREGFLPVAVNGVQIYPSRIALQNVNLPETRGYYRQEEVID
CCCCCCCCCCCHHHHHHHHHCCCCEEEEECCEEEECCEEEEECCCCCCCCCCCCCCCEEE
IQPNRLVGNFPPKIPEAEEKELPPPKGTVVLPEPVVPEYIVVHNGRPNDNSVANYKVNYK
ECCCCEECCCCCCCCCCCHHCCCCCCCEEECCCCCCCCEEEEECCCCCCCCEEEEEECHH
DYIKNVACCEIFSTWSENTIRANVYAIISFTLNRIYTEWYRGKGKNFDITNSTAFDHAFS
HHHCHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
YGRNFYDNISRIVDEIFSTYMKRFNSKQPLLAQYCDGINVQCPGWMTQWGSKYLGDEGKV
HCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEECCCHHHHHCHHHCCCCCCC
PYDILTSFYGDDLELKSAKKVKGSPRSYPGYTLKTGYSGEPVRVIQEQLNAISRAYPLIP
CHHHHHHHCCCCCEECCHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
KIAVDGKYGPKTREAVKTFQKIFNLPQTGEVDYATWYKISDVYVAVTKIAELRSSVEKKI
EEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHEE
FYPPTIMDRRENVPKIIY
ECCCCHHHHCCCCCCCCC
>Mature Secondary Structure 
ALGGLKVQCFSEQRRYIPIDKCKVKITPTGEDGVAVGDTIELYTDDTGSTDTIELDAPP
CCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCEEECCEEEEEECCCCCCCEEEECCCC
IENSNQPGTIPYSFAEVIVEREGFLPVAVNGVQIYPSRIALQNVNLPETRGYYRQEEVID
CCCCCCCCCCCHHHHHHHHHCCCCEEEEECCEEEECCEEEEECCCCCCCCCCCCCCCEEE
IQPNRLVGNFPPKIPEAEEKELPPPKGTVVLPEPVVPEYIVVHNGRPNDNSVANYKVNYK
ECCCCEECCCCCCCCCCCHHCCCCCCCEEECCCCCCCCEEEEECCCCCCCCEEEEEECHH
DYIKNVACCEIFSTWSENTIRANVYAIISFTLNRIYTEWYRGKGKNFDITNSTAFDHAFS
HHHCHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
YGRNFYDNISRIVDEIFSTYMKRFNSKQPLLAQYCDGINVQCPGWMTQWGSKYLGDEGKV
HCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEECCCHHHHHCHHHCCCCCCC
PYDILTSFYGDDLELKSAKKVKGSPRSYPGYTLKTGYSGEPVRVIQEQLNAISRAYPLIP
CHHHHHHHCCCCCEECCHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
KIAVDGKYGPKTREAVKTFQKIFNLPQTGEVDYATWYKISDVYVAVTKIAELRSSVEKKI
EEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHEE
FYPPTIMDRRENVPKIIY
ECCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA