| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is malZ [H]
Identifier: 172087750
GI number: 172087750
Start: 2280648
End: 2282480
Strand: Direct
Name: malZ [H]
Synonym: VF_2049
Alternate gene names: 172087750
Gene position: 2280648-2282480 (Clockwise)
Preceding gene: 59712655
Following gene: 59712658
Centisome position: 78.71
GC content: 40.86
Gene sequence:
>1833_bases ATGATTACAAAAGCAGCGATTTATCATCGATCTCACTCTAGTTATTCTTATGCATATGATAAGGATACGCTTCATTTGCG AATTCGTACCGCAAAAGGAGAAGTAGACAATGCGACGCTAAGAATTGGCGACCCATACGATTGGACTTTTGGTGGCGGTG GCGGCAATTTAAATGCTGAAGACGCAAGCGGCTGGACAGGTGGAACCAACTTACCCATGATAAAAGAGTGTGAAACAGAA CTGTTTGACTACTGGTTTTGTGAAGCACAACCTCGCTTTTATCGTGCACGTTACGCTTTCCTTCTTGAAGGCAAAGACAG TGAAAAATTACTGGTAAGCGAAAAACTCATCACCCAAATAACCGATGACGCCGATCCAATACTCAGTCAATTACTGAATT TTTATTGCTTCCCATACATGAACCCAACTGATGTGTTTAACGCACCAGAATGGGTTAAAGAAACCATTTGGTATCAAATT TTCCCAGAGCGTTTTGCTAATGGTGACCCATCTATCTCACCAAAAAATGTACTGCCTTGGGGATCTGAAGATCCAAAAAC CAACAGTTTCTTTGGTGGCGATTTACAAGGGGTTATTGATCATCTTGATTACCTGCAAGATCTCGGTATTACTGGTATTT ATTTCACACCTATCACTCAAGGTGAAACGAACCATAAATACGACACCACCGATTATTTAAAAGTAGACCCCGCTTTTGGT AGTGATGAAACGGTTCATACTTTAATAGATGAAGCACATAAACGTGGCATGAAAGTCATGCTAGATGCGGTATTTAATCA TATCGGTGCTAATTCAATTCAGTGGCAAGATGTCATTAAACATGGAAAAGACTCTCAATACATCGATTGGTTTTATGTCG AGCAATTTCCACTGATTGATGAGTCAAAAAAAGCGTACCACAGTAAAGAGCAATTAAATTATCGTGCCTTTGCTTTTGCG CAAAACATGCCAAAACTCAATACAGAAAATCCAGAAGTGATTGAATACCTAATTGAAGTTGGCCGCTACTGGGTGAAAAA CTTTGACATTGATGCATGGCGTTTAGATGTAGCAAACGAAGTTGATCAACGTTTTTGGCGACGCTTCCGTGATGAACTAA AAGCCATCAAACCTGAGTTATATATTTTAGGTGAAGTGTGGCACGACTCAATGAACTGGCTAGGTGGTGATCAGTTTGAT GGCGTAATGAATTACCCATTAGCGGATGCCATGTTAGGCTTTTTTGCCCATGACAACCTAAGTGCAAATCAGTTTAAATT TGCGGTAAATGACGTTAATGCCAACTACCCTATTAACGTGAATGAAGTGGCCTTTTCATTACTTGATAGCCACGATACAC CACGCATTATTAACCGATGCAACGGCAATAAAGAGAAAGCGAAGTTAGCCTATTTGTTCCAATTCACTCACAGTGGTACG CCTTGTATTTATTACGGTGGTGAAATTGGGCTAGATGGCGGTGTTGATCCGCTTAACCGAAAATGCATGATTTGGGATGA ACGTCAGCATGATATGAACATGAAACATCACATCATGCAGCTCATCAAACTGCGTAAAGCTCACCCAGCGTTACGTGCTC ATGCCATAAACTGGCTTGTGGTTGACGATGAACAACAGTGCTTTATCTACCAAAAAGAATATCAGGGTGAACGTATTATT ATTGCTATGAACAACAGTAATGCCCCCGCTTGTATGACGCTTCCTAGTGAGTGGCGTGATCAAGAGGTCACCGATATTTA TCATGAAACCGCCGTTAAATTAACGCAAAGTTTGACGGTGCCTGCATTTGGCTTTGCTGTTTATCAGATTTAA
Upstream 100 bases:
>100_bases TTTTGCTCAAGCTTGGAGCGTCAGCGAAGTGTTACGTGTTCTTAAACATTATGAAGAACGTATCTAACCATTACGAACTT AACGCTAAACGGTATTAATA
Downstream 100 bases:
>100_bases ACGCTATAAGTAGCAATGTATTGATAAGAAACATAAAATAGCTCTTTTCGATTAGTCTGAAGAGCTATTATGTTTAAATT AATGCTTCAATTCATACAAG
Product: maltodextrin glucosidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 610; Mature: 610
Protein sequence:
>610_residues MITKAAIYHRSHSSYSYAYDKDTLHLRIRTAKGEVDNATLRIGDPYDWTFGGGGGNLNAEDASGWTGGTNLPMIKECETE LFDYWFCEAQPRFYRARYAFLLEGKDSEKLLVSEKLITQITDDADPILSQLLNFYCFPYMNPTDVFNAPEWVKETIWYQI FPERFANGDPSISPKNVLPWGSEDPKTNSFFGGDLQGVIDHLDYLQDLGITGIYFTPITQGETNHKYDTTDYLKVDPAFG SDETVHTLIDEAHKRGMKVMLDAVFNHIGANSIQWQDVIKHGKDSQYIDWFYVEQFPLIDESKKAYHSKEQLNYRAFAFA QNMPKLNTENPEVIEYLIEVGRYWVKNFDIDAWRLDVANEVDQRFWRRFRDELKAIKPELYILGEVWHDSMNWLGGDQFD GVMNYPLADAMLGFFAHDNLSANQFKFAVNDVNANYPINVNEVAFSLLDSHDTPRIINRCNGNKEKAKLAYLFQFTHSGT PCIYYGGEIGLDGGVDPLNRKCMIWDERQHDMNMKHHIMQLIKLRKAHPALRAHAINWLVVDDEQQCFIYQKEYQGERII IAMNNSNAPACMTLPSEWRDQEVTDIYHETAVKLTQSLTVPAFGFAVYQI
Sequences:
>Translated_610_residues MITKAAIYHRSHSSYSYAYDKDTLHLRIRTAKGEVDNATLRIGDPYDWTFGGGGGNLNAEDASGWTGGTNLPMIKECETE LFDYWFCEAQPRFYRARYAFLLEGKDSEKLLVSEKLITQITDDADPILSQLLNFYCFPYMNPTDVFNAPEWVKETIWYQI FPERFANGDPSISPKNVLPWGSEDPKTNSFFGGDLQGVIDHLDYLQDLGITGIYFTPITQGETNHKYDTTDYLKVDPAFG SDETVHTLIDEAHKRGMKVMLDAVFNHIGANSIQWQDVIKHGKDSQYIDWFYVEQFPLIDESKKAYHSKEQLNYRAFAFA QNMPKLNTENPEVIEYLIEVGRYWVKNFDIDAWRLDVANEVDQRFWRRFRDELKAIKPELYILGEVWHDSMNWLGGDQFD GVMNYPLADAMLGFFAHDNLSANQFKFAVNDVNANYPINVNEVAFSLLDSHDTPRIINRCNGNKEKAKLAYLFQFTHSGT PCIYYGGEIGLDGGVDPLNRKCMIWDERQHDMNMKHHIMQLIKLRKAHPALRAHAINWLVVDDEQQCFIYQKEYQGERII IAMNNSNAPACMTLPSEWRDQEVTDIYHETAVKLTQSLTVPAFGFAVYQI >Mature_610_residues MITKAAIYHRSHSSYSYAYDKDTLHLRIRTAKGEVDNATLRIGDPYDWTFGGGGGNLNAEDASGWTGGTNLPMIKECETE LFDYWFCEAQPRFYRARYAFLLEGKDSEKLLVSEKLITQITDDADPILSQLLNFYCFPYMNPTDVFNAPEWVKETIWYQI FPERFANGDPSISPKNVLPWGSEDPKTNSFFGGDLQGVIDHLDYLQDLGITGIYFTPITQGETNHKYDTTDYLKVDPAFG SDETVHTLIDEAHKRGMKVMLDAVFNHIGANSIQWQDVIKHGKDSQYIDWFYVEQFPLIDESKKAYHSKEQLNYRAFAFA QNMPKLNTENPEVIEYLIEVGRYWVKNFDIDAWRLDVANEVDQRFWRRFRDELKAIKPELYILGEVWHDSMNWLGGDQFD GVMNYPLADAMLGFFAHDNLSANQFKFAVNDVNANYPINVNEVAFSLLDSHDTPRIINRCNGNKEKAKLAYLFQFTHSGT PCIYYGGEIGLDGGVDPLNRKCMIWDERQHDMNMKHHIMQLIKLRKAHPALRAHAINWLVVDDEQQCFIYQKEYQGERII IAMNNSNAPACMTLPSEWRDQEVTDIYHETAVKLTQSLTVPAFGFAVYQI
Specific function: Hydrolyzes pullulan efficiently but only a small amount of starch. Endohydrolysis of 1,4-alpha-glucosidic linkages in pullulan to form panose. Cleaves also (1-6)-alpha-glucosidic linkages to form maltotriose [H]
COG id: COG0366
COG function: function code G; Glycosidases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 13 family [H]
Homologues:
Organism=Homo sapiens, GI187423904, Length=398, Percent_Identity=23.3668341708543, Blast_Score=86, Evalue=1e-16, Organism=Escherichia coli, GI1786604, Length=465, Percent_Identity=29.8924731182796, Blast_Score=199, Evalue=6e-52, Organism=Escherichia coli, GI1790687, Length=394, Percent_Identity=25.8883248730964, Blast_Score=109, Evalue=6e-25, Organism=Escherichia coli, GI1789995, Length=145, Percent_Identity=33.1034482758621, Blast_Score=77, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6322245, Length=236, Percent_Identity=28.8135593220339, Blast_Score=88, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6319776, Length=404, Percent_Identity=24.009900990099, Blast_Score=88, Evalue=4e-18, Organism=Saccharomyces cerevisiae, GI6321731, Length=404, Percent_Identity=23.7623762376238, Blast_Score=87, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6321726, Length=231, Percent_Identity=27.7056277056277, Blast_Score=82, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6322241, Length=231, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=8e-16, Organism=Saccharomyces cerevisiae, GI6322021, Length=231, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=8e-16, Organism=Saccharomyces cerevisiae, GI6324416, Length=231, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI221330053, Length=193, Percent_Identity=31.6062176165803, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI24583745, Length=403, Percent_Identity=24.8138957816377, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI24583747, Length=232, Percent_Identity=28.0172413793103, Blast_Score=79, Evalue=7e-15, Organism=Drosophila melanogaster, GI24583749, Length=232, Percent_Identity=28.0172413793103, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI24586587, Length=229, Percent_Identity=25.3275109170306, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24586599, Length=225, Percent_Identity=27.1111111111111, Blast_Score=77, Evalue=4e-14, Organism=Drosophila melanogaster, GI24586591, Length=227, Percent_Identity=26.8722466960352, Blast_Score=76, Evalue=5e-14, Organism=Drosophila melanogaster, GI45549022, Length=246, Percent_Identity=27.6422764227642, Blast_Score=73, Evalue=4e-13, Organism=Drosophila melanogaster, GI24586593, Length=436, Percent_Identity=23.394495412844, Blast_Score=73, Evalue=5e-13, Organism=Drosophila melanogaster, GI24586589, Length=221, Percent_Identity=27.1493212669683, Blast_Score=71, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013780 - InterPro: IPR006047 - InterPro: IPR004185 - InterPro: IPR006589 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 [H]
Pfam domain/function: PF00128 Alpha-amylase; PF02903 Alpha-amylase_N [H]
EC number: =3.2.1.135 [H]
Molecular weight: Translated: 70386; Mature: 70386
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITKAAIYHRSHSSYSYAYDKDTLHLRIRTAKGEVDNATLRIGDPYDWTFGGGGGNLNAE CCCCEEEEECCCCCCEEEECCCEEEEEEEECCCCCCCCEEEECCCCCEEECCCCCCCCCC DASGWTGGTNLPMIKECETELFDYWFCEAQPRFYRARYAFLLEGKDSEKLLVSEKLITQI CCCCCCCCCCCCCHHHHHHHHHHEEEECCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHH TDDADPILSQLLNFYCFPYMNPTDVFNAPEWVKETIWYQIFPERFANGDPSISPKNVLPW CCCHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHEECHHHHCCCCCCCCCCCCCCC GSEDPKTNSFFGGDLQGVIDHLDYLQDLGITGIYFTPITQGETNHKYDTTDYLKVDPAFG CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCC SDETVHTLIDEAHKRGMKVMLDAVFNHIGANSIQWQDVIKHGKDSQYIDWFYVEQFPLID CCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEEEEEECCCCC ESKKAYHSKEQLNYRAFAFAQNMPKLNTENPEVIEYLIEVGRYWVKNFDIDAWRLDVANE CHHHHHHHHHHCCHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECHHHH VDQRFWRRFRDELKAIKPELYILGEVWHDSMNWLGGDQFDGVMNYPLADAMLGFFAHDNL HHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCC SANQFKFAVNDVNANYPINVNEVAFSLLDSHDTPRIINRCNGNKEKAKLAYLFQFTHSGT CCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHEEEEEEEEECCCC PCIYYGGEIGLDGGVDPLNRKCMIWDERQHDMNMKHHIMQLIKLRKAHPALRAHAINWLV CEEEECCEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHEEEEEEE VDDEQQCFIYQKEYQGERIIIAMNNSNAPACMTLPSEWRDQEVTDIYHETAVKLTQSLTV ECCCCCEEEEEECCCCCEEEEEECCCCCCEEEECCHHHCCCHHHHHHHHHHHHHHHHCCC PAFGFAVYQI CHHCEEEEEC >Mature Secondary Structure MITKAAIYHRSHSSYSYAYDKDTLHLRIRTAKGEVDNATLRIGDPYDWTFGGGGGNLNAE CCCCEEEEECCCCCCEEEECCCEEEEEEEECCCCCCCCEEEECCCCCEEECCCCCCCCCC DASGWTGGTNLPMIKECETELFDYWFCEAQPRFYRARYAFLLEGKDSEKLLVSEKLITQI CCCCCCCCCCCCCHHHHHHHHHHEEEECCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHH TDDADPILSQLLNFYCFPYMNPTDVFNAPEWVKETIWYQIFPERFANGDPSISPKNVLPW CCCHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHEECHHHHCCCCCCCCCCCCCCC GSEDPKTNSFFGGDLQGVIDHLDYLQDLGITGIYFTPITQGETNHKYDTTDYLKVDPAFG CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCC SDETVHTLIDEAHKRGMKVMLDAVFNHIGANSIQWQDVIKHGKDSQYIDWFYVEQFPLID CCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEEEEEECCCCC ESKKAYHSKEQLNYRAFAFAQNMPKLNTENPEVIEYLIEVGRYWVKNFDIDAWRLDVANE CHHHHHHHHHHCCHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECHHHH VDQRFWRRFRDELKAIKPELYILGEVWHDSMNWLGGDQFDGVMNYPLADAMLGFFAHDNL HHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCC SANQFKFAVNDVNANYPINVNEVAFSLLDSHDTPRIINRCNGNKEKAKLAYLFQFTHSGT CCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHEEEEEEEEECCCC PCIYYGGEIGLDGGVDPLNRKCMIWDERQHDMNMKHHIMQLIKLRKAHPALRAHAINWLV CEEEECCEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHEEEEEEE VDDEQQCFIYQKEYQGERIIIAMNNSNAPACMTLPSEWRDQEVTDIYHETAVKLTQSLTV ECCCCCEEEEEECCCCCEEEEEECCCCCCEEEECCHHHCCCHHHHHHHHHHHHHHHHCCC PAFGFAVYQI CHHCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2482332; 12547200 [H]