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The map label for this gene is 59712655

Identifier: 59712655

GI number: 59712655

Start: 2278647

End: 2280614

Strand: Direct

Name: 59712655

Synonym: VF_2048

Alternate gene names: NA

Gene position: 2278647-2280614 (Clockwise)

Preceding gene: 59712654

Following gene: 172087750

Centisome position: 78.64

GC content: 41.87

Gene sequence:

>1968_bases
ATGAAAATCTCTCTTTCTAAAGCTAACTTTCGCGATATGAATCGCCTTGAAGAATCAAATTACTTACTAACCAACGGGTT
AGGCGGTTATTCATCATTAACTCTTGCTGGTTCTTGTAGCCGAAATGATCACGCGCTATTTATGGGAAGCCTAGTGGCTC
CTAATAGTCGTTTTTGTTTTGTTCGCCATTTAGATGATCGCCTTACACTGGCAAATGGCACATCACACCCACTCTCTTCT
CAAGCAAAAGTGAACCCATACGATACAGTTGATTCATCCCTTTTATTTGAAAATTTTAGCCAGACTTACTTACCTCAATA
CACCTATCGTATCGATGGTATTGAAATCACAAAGACCATCGTGATGGCGCAAGGCGTGAACCGCTTAGGGGTTGAATACC
GTGTATTTAATCCGTTAAAACACCCATTCACTTTAGATATCACGCCGAAATATCACTTCTGTGCGAAAGGTGAGGCATTA
TCAAAAGAACAAGCTTTCATTCATCAAGAAGGCAAAGTAAGCAGTAACGGACAAACACTGCATTACCGTCATAACGGTTC
AAATACAGCCCTATCAGCACCAAGCTATGAGTCAGGGTTGTATTTCTCTTATGACGCTCGAGACGGACGTTCGGCAAGCG
ATGCTCAAGTGGCGCTGCATACCATTACCTTTGATGGTACAGAGAGTAACGAATCCTTTTTTGTTATCTTCGAGGCAGAA
GAAGAACGAGCGCATTACTTAGCACCAAGCTCTATTGAAACCATGATCAATGATGAAGTTCAACGTCAGCAAGCGTGTAT
TACACAATCAGGTCTAAAGAGTACGTTTGCTCAGCAATTGGTTCGAGCGAGTGATCAATTTGTCGTAATGCGTGATTCAA
CCGAATCGAAATCCATCATTGCTGGCTACCCATTCTTTGCCGATTGGGGACGCGATACCATGATTGCACTTTGGGGATGT
AATTTATCCACCAACCAATTTGAAGATGCAAAACAAATATTCAGAACCTTCATCCGTTATGAGCATAAAGGGATCTTACC
CAACTTATTCCCTGAAGCGGGTGTCGAGCCTATGTACAACACCATTGATGCCGCTCTTTTATTTGTGGTGAGCCTGTATG
AATATTACCAAGCCAGTAACGATCTCGATTTTATTCGTGATGAAGCTTACGACTGCATGGTGAATATTTATCAGCATTAT
CGCAATGGCACCGATTTCGATATCAAAATGCTAGATAACGGCTTAATTAGCGGTGGCAGTGGTTTGGATCAACTGACATG
GATGGACGTTCGTTATGGCGATATTCTTCCAACGCCTCGCCAAGGTTGCGCCGTTGAGATCAATGCACTTTGGTATAACG
CGTTATCTATTCTGCATTTCTTTAACCAAAAGTTAGGGAAATCAATGCCAGAATTACCAGCTCTGACTGAGCAAGTAAAA
GAAACATTTAATCACGCTTTCTATAATGATAAAGGCTATTTAAACGATTGGATTAAAGGTGAGGAAGTGAACCAACAAAT
TCGTCCAAACCAAGCTTATGCTGTTGGTCTTCCTTTCCCTATTTTAAGTGAAGAAAAAGCGCGTTCGGTTATTTTAAATA
TCTACCAGCACCTTTATACCCCGCTGGGTTTACGCTCTTTAGCGATGCAAGATCCCGAGTTTAAATCGGTACATACTGGG
TCTCATTATGATCGTGATATGGCTTACCACCAAGGTACCGTCTGGGGCTTTATGATTGGTCAGTTCCTGATGGGTATTTT
ACGTCACTTCCCTAATGACGCGTCACTCATGCACATTGTCGAGCAGTTCATTTCTCATAACCAAGATGCGCTATCTGAAG
GGTGTATTGGTCAATTAGCTGAAATTTATGATGGTTATTCACCTAACCAATCTCGTGGCTGTTTTGCTCAAGCTTGGAGC
GTCAGCGAAGTGTTACGTGTTCTTAAACATTATGAAGAACGTATCTAA

Upstream 100 bases:

>100_bases
TTAAAAGCTAACACCAATCGCTATTTAACTTATTGGCCTATCATAGGCCAAAAAGGCACAAGCTAGCCGATTAGGTATTT
TTTGTCATAAAGGATTTCAC

Downstream 100 bases:

>100_bases
CCATTACGAACTTAACGCTAAACGGTATTAATAATGATTACAAAAGCAGCGATTTATCATCGATCTCACTCTAGTTATTC
TTATGCATATGATAAGGATA

Product: amylo-1,6-glucosidase

Products: NA

Alternate protein names: Glycogen Debranching Protein; Amylo-Alpha-16-Glucosidase; Glycogen Debranching -Related Protein; Glycogen Debranching ; 4-Alpha-Glucanotransferase; Amylo-Alpha-1 6-Glucosidase; Glyen Debranching; Amylo-Alpha-1 6-Glucosidase Family; AmylO-Alpha-16-Glucosidase; Glycogen Debranching Family Protein; Glycogen Debranching /Alpha-Amylase; Glycogen Debranching Archaeal Type; Glycogen Debranching Isoform 1 Related Protein; Amylo-1 6-Glucosidase

Number of amino acids: Translated: 655; Mature: 655

Protein sequence:

>655_residues
MKISLSKANFRDMNRLEESNYLLTNGLGGYSSLTLAGSCSRNDHALFMGSLVAPNSRFCFVRHLDDRLTLANGTSHPLSS
QAKVNPYDTVDSSLLFENFSQTYLPQYTYRIDGIEITKTIVMAQGVNRLGVEYRVFNPLKHPFTLDITPKYHFCAKGEAL
SKEQAFIHQEGKVSSNGQTLHYRHNGSNTALSAPSYESGLYFSYDARDGRSASDAQVALHTITFDGTESNESFFVIFEAE
EERAHYLAPSSIETMINDEVQRQQACITQSGLKSTFAQQLVRASDQFVVMRDSTESKSIIAGYPFFADWGRDTMIALWGC
NLSTNQFEDAKQIFRTFIRYEHKGILPNLFPEAGVEPMYNTIDAALLFVVSLYEYYQASNDLDFIRDEAYDCMVNIYQHY
RNGTDFDIKMLDNGLISGGSGLDQLTWMDVRYGDILPTPRQGCAVEINALWYNALSILHFFNQKLGKSMPELPALTEQVK
ETFNHAFYNDKGYLNDWIKGEEVNQQIRPNQAYAVGLPFPILSEEKARSVILNIYQHLYTPLGLRSLAMQDPEFKSVHTG
SHYDRDMAYHQGTVWGFMIGQFLMGILRHFPNDASLMHIVEQFISHNQDALSEGCIGQLAEIYDGYSPNQSRGCFAQAWS
VSEVLRVLKHYEERI

Sequences:

>Translated_655_residues
MKISLSKANFRDMNRLEESNYLLTNGLGGYSSLTLAGSCSRNDHALFMGSLVAPNSRFCFVRHLDDRLTLANGTSHPLSS
QAKVNPYDTVDSSLLFENFSQTYLPQYTYRIDGIEITKTIVMAQGVNRLGVEYRVFNPLKHPFTLDITPKYHFCAKGEAL
SKEQAFIHQEGKVSSNGQTLHYRHNGSNTALSAPSYESGLYFSYDARDGRSASDAQVALHTITFDGTESNESFFVIFEAE
EERAHYLAPSSIETMINDEVQRQQACITQSGLKSTFAQQLVRASDQFVVMRDSTESKSIIAGYPFFADWGRDTMIALWGC
NLSTNQFEDAKQIFRTFIRYEHKGILPNLFPEAGVEPMYNTIDAALLFVVSLYEYYQASNDLDFIRDEAYDCMVNIYQHY
RNGTDFDIKMLDNGLISGGSGLDQLTWMDVRYGDILPTPRQGCAVEINALWYNALSILHFFNQKLGKSMPELPALTEQVK
ETFNHAFYNDKGYLNDWIKGEEVNQQIRPNQAYAVGLPFPILSEEKARSVILNIYQHLYTPLGLRSLAMQDPEFKSVHTG
SHYDRDMAYHQGTVWGFMIGQFLMGILRHFPNDASLMHIVEQFISHNQDALSEGCIGQLAEIYDGYSPNQSRGCFAQAWS
VSEVLRVLKHYEERI
>Mature_655_residues
MKISLSKANFRDMNRLEESNYLLTNGLGGYSSLTLAGSCSRNDHALFMGSLVAPNSRFCFVRHLDDRLTLANGTSHPLSS
QAKVNPYDTVDSSLLFENFSQTYLPQYTYRIDGIEITKTIVMAQGVNRLGVEYRVFNPLKHPFTLDITPKYHFCAKGEAL
SKEQAFIHQEGKVSSNGQTLHYRHNGSNTALSAPSYESGLYFSYDARDGRSASDAQVALHTITFDGTESNESFFVIFEAE
EERAHYLAPSSIETMINDEVQRQQACITQSGLKSTFAQQLVRASDQFVVMRDSTESKSIIAGYPFFADWGRDTMIALWGC
NLSTNQFEDAKQIFRTFIRYEHKGILPNLFPEAGVEPMYNTIDAALLFVVSLYEYYQASNDLDFIRDEAYDCMVNIYQHY
RNGTDFDIKMLDNGLISGGSGLDQLTWMDVRYGDILPTPRQGCAVEINALWYNALSILHFFNQKLGKSMPELPALTEQVK
ETFNHAFYNDKGYLNDWIKGEEVNQQIRPNQAYAVGLPFPILSEEKARSVILNIYQHLYTPLGLRSLAMQDPEFKSVHTG
SHYDRDMAYHQGTVWGFMIGQFLMGILRHFPNDASLMHIVEQFISHNQDALSEGCIGQLAEIYDGYSPNQSRGCFAQAWS
VSEVLRVLKHYEERI

Specific function: Unknown

COG id: COG3408

COG function: function code G; Glycogen debranching enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI17535489, Length=427, Percent_Identity=26.463700234192, Blast_Score=101, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.2.1.33

Molecular weight: Translated: 74306; Mature: 74306

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISLSKANFRDMNRLEESNYLLTNGLGGYSSLTLAGSCSRNDHALFMGSLVAPNSRFCF
CEEECCCCCHHHHHHHHHCCEEEECCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCEEE
VRHLDDRLTLANGTSHPLSSQAKVNPYDTVDSSLLFENFSQTYLPQYTYRIDGIEITKTI
EEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCEEHHHHH
VMAQGVNRLGVEYRVFNPLKHPFTLDITPKYHFCAKGEALSKEQAFIHQEGKVSSNGQTL
HHHCCCHHHCCEEEEECCCCCCEEEEECCCEEEECCCCCCCHHHHHHHCCCCCCCCCCEE
HYRHNGSNTALSAPSYESGLYFSYDARDGRSASDAQVALHTITFDGTESNESFFVIFEAE
EEEECCCCCEECCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEECC
EERAHYLAPSSIETMINDEVQRQQACITQSGLKSTFAQQLVRASDQFVVMRDSTESKSII
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEE
AGYPFFADWGRDTMIALWGCNLSTNQFEDAKQIFRTFIRYEHKGILPNLFPEAGVEPMYN
ECCCCHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
TIDAALLFVVSLYEYYQASNDLDFIRDEAYDCMVNIYQHYRNGTDFDIKMLDNGLISGGS
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
GLDQLTWMDVRYGDILPTPRQGCAVEINALWYNALSILHFFNQKLGKSMPELPALTEQVK
CCCCEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
ETFNHAFYNDKGYLNDWIKGEEVNQQIRPNQAYAVGLPFPILSEEKARSVILNIYQHLYT
HHHHHHHCCCCCCHHHCCCCCHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCC
PLGLRSLAMQDPEFKSVHTGSHYDRDMAYHQGTVWGFMIGQFLMGILRHFPNDASLMHIV
CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
EQFISHNQDALSEGCIGQLAEIYDGYSPNQSRGCFAQAWSVSEVLRVLKHYEERI
HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKISLSKANFRDMNRLEESNYLLTNGLGGYSSLTLAGSCSRNDHALFMGSLVAPNSRFCF
CEEECCCCCHHHHHHHHHCCEEEECCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCEEE
VRHLDDRLTLANGTSHPLSSQAKVNPYDTVDSSLLFENFSQTYLPQYTYRIDGIEITKTI
EEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCEEHHHHH
VMAQGVNRLGVEYRVFNPLKHPFTLDITPKYHFCAKGEALSKEQAFIHQEGKVSSNGQTL
HHHCCCHHHCCEEEEECCCCCCEEEEECCCEEEECCCCCCCHHHHHHHCCCCCCCCCCEE
HYRHNGSNTALSAPSYESGLYFSYDARDGRSASDAQVALHTITFDGTESNESFFVIFEAE
EEEECCCCCEECCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEECC
EERAHYLAPSSIETMINDEVQRQQACITQSGLKSTFAQQLVRASDQFVVMRDSTESKSII
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEE
AGYPFFADWGRDTMIALWGCNLSTNQFEDAKQIFRTFIRYEHKGILPNLFPEAGVEPMYN
ECCCCHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
TIDAALLFVVSLYEYYQASNDLDFIRDEAYDCMVNIYQHYRNGTDFDIKMLDNGLISGGS
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
GLDQLTWMDVRYGDILPTPRQGCAVEINALWYNALSILHFFNQKLGKSMPELPALTEQVK
CCCCEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
ETFNHAFYNDKGYLNDWIKGEEVNQQIRPNQAYAVGLPFPILSEEKARSVILNIYQHLYT
HHHHHHHCCCCCCHHHCCCCCHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCC
PLGLRSLAMQDPEFKSVHTGSHYDRDMAYHQGTVWGFMIGQFLMGILRHFPNDASLMHIV
CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
EQFISHNQDALSEGCIGQLAEIYDGYSPNQSRGCFAQAWSVSEVLRVLKHYEERI
HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA