| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
Click here to switch to the map view.
The map label for this gene is 170078716
Identifier: 170078716
GI number: 170078716
Start: 2199058
End: 2200155
Strand: Reverse
Name: 170078716
Synonym: SYNPCC7002_A2117
Alternate gene names: NA
Gene position: 2200155-2199058 (Counterclockwise)
Preceding gene: 170078722
Following gene: 170078714
Centisome position: 73.14
GC content: 38.98
Gene sequence:
>1098_bases TTGTCTATCTTCACTATGTTACTGAATATTGACAGCAATACCACCCCGATTGAAGCACCAATCCACAGGGAAGAACGAGA GATAAAAAAGGTTTGGTATCTAGCGGCACCGCAAAATTTAAACCCTAGTTTACGAGAAACATCTACATCCTCTGAAGATG TAACGGAAGGTTTACAGACTATTCCTGAGACTTCTTCTACAGACAATGAAGAACAACAAACAAAAAATTCAACATCTTTT TGGGATCCGGAATCAGTCACCATAGATTTTCGCTACTTTACCACCAATTTTGAGCAGGATAATCTTTTAATTCAACCCAG CATTACTGGTACTTTACCTAATGGCGATCGCCTGAGTTTGACAAGCGGCTTTAATCGATTCCAGCAACCAGAGATTGATT CGATCCAAAATATTCCTTTACAGTTTGATTGGGAAGGAAAAATTGCTGGTTTAGAGAGTGATATTGGGACTGGAATTGAT TGGTTTGATCGCGTTACGCCAGCTCTTAGTTTTCGGGCCAATAGCCGTGTGAATATCGGTGAACGAGCCAGTTTGTCTTT TTTTGTCGAACATGCTCCCTATAAATTTAATGCAAAAACCGTTGAAAATGAAATCACAAATTGGCGTTATGGCCCCAATC TATTCTGGCAAATTTCTCCAGATACAAGCTTTTTTAGTTTGGTTCGTTGGGGTCGTTACAGTGATGGCAATCATGAACAA CAATCCTTTAGTCGATTAGAACATACTAGCGGTGAATTTCAGCTAGCAGCGAATCTTTTTAACTGGCGTTATCGCGAAGA TAAAGAAATAGAAAGTGGCTATTTTTCACCAGAAGATTTTCTTGTTATCAATGGTGAATTGATTTGGAATAAAAATATTT TTTCCTGGTTGGATTGTAATTTGTCCACATCTGTTGGCCGGCAACGCCTCCAAGGACAATGGGATTTTGTATATGGCTAT GGTGGTCGCTGTACCACAACAATTGCTGAAGATATTTTCTGGGATCTAGATTATCGTTTTAGTAATGTTTTAGGAGACAA CAGTAACAGTCGATATAACAGCGAAACATGGAGAATAATATTGCGGGTACAGCTTTGA
Upstream 100 bases:
>100_bases CCTATGGCTTTCCTTAGACAAGTCACACTCAAATTGAGTCTATATTACATCCAAAAAAACAGTTTATAATCTCTGTTAAG AAAAATATTTATAAATCATT
Downstream 100 bases:
>100_bases TTTTTTAACTAATGATTTCTGAGATTTCGAGATACGAAAAAAAAATTCTACTTAATAAATAGAAATAAACGTGAGACGTT TGTAGTTAATTATTTACATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 365; Mature: 364
Protein sequence:
>365_residues MSIFTMLLNIDSNTTPIEAPIHREEREIKKVWYLAAPQNLNPSLRETSTSSEDVTEGLQTIPETSSTDNEEQQTKNSTSF WDPESVTIDFRYFTTNFEQDNLLIQPSITGTLPNGDRLSLTSGFNRFQQPEIDSIQNIPLQFDWEGKIAGLESDIGTGID WFDRVTPALSFRANSRVNIGERASLSFFVEHAPYKFNAKTVENEITNWRYGPNLFWQISPDTSFFSLVRWGRYSDGNHEQ QSFSRLEHTSGEFQLAANLFNWRYREDKEIESGYFSPEDFLVINGELIWNKNIFSWLDCNLSTSVGRQRLQGQWDFVYGY GGRCTTTIAEDIFWDLDYRFSNVLGDNSNSRYNSETWRIILRVQL
Sequences:
>Translated_365_residues MSIFTMLLNIDSNTTPIEAPIHREEREIKKVWYLAAPQNLNPSLRETSTSSEDVTEGLQTIPETSSTDNEEQQTKNSTSF WDPESVTIDFRYFTTNFEQDNLLIQPSITGTLPNGDRLSLTSGFNRFQQPEIDSIQNIPLQFDWEGKIAGLESDIGTGID WFDRVTPALSFRANSRVNIGERASLSFFVEHAPYKFNAKTVENEITNWRYGPNLFWQISPDTSFFSLVRWGRYSDGNHEQ QSFSRLEHTSGEFQLAANLFNWRYREDKEIESGYFSPEDFLVINGELIWNKNIFSWLDCNLSTSVGRQRLQGQWDFVYGY GGRCTTTIAEDIFWDLDYRFSNVLGDNSNSRYNSETWRIILRVQL >Mature_364_residues SIFTMLLNIDSNTTPIEAPIHREEREIKKVWYLAAPQNLNPSLRETSTSSEDVTEGLQTIPETSSTDNEEQQTKNSTSFW DPESVTIDFRYFTTNFEQDNLLIQPSITGTLPNGDRLSLTSGFNRFQQPEIDSIQNIPLQFDWEGKIAGLESDIGTGIDW FDRVTPALSFRANSRVNIGERASLSFFVEHAPYKFNAKTVENEITNWRYGPNLFWQISPDTSFFSLVRWGRYSDGNHEQQ SFSRLEHTSGEFQLAANLFNWRYREDKEIESGYFSPEDFLVINGELIWNKNIFSWLDCNLSTSVGRQRLQGQWDFVYGYG GRCTTTIAEDIFWDLDYRFSNVLGDNSNSRYNSETWRIILRVQL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42312; Mature: 42181
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIFTMLLNIDSNTTPIEAPIHREEREIKKVWYLAAPQNLNPSLRETSTSSEDVTEGLQT CCEEEEEEECCCCCCCCCCCCCHHHHHHEEEEEEECCCCCCCCHHHCCCCHHHHHHHHHH IPETSSTDNEEQQTKNSTSFWDPESVTIDFRYFTTNFEQDNLLIQPSITGTLPNGDRLSL CCCCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCEEECCCCEEECCCCCEEEE TSGFNRFQQPEIDSIQNIPLQFDWEGKIAGLESDIGTGIDWFDRVTPALSFRANSRVNIG HHCCHHCCCCCCCHHHCCCEEEECCCCEECCCCCCCCCCHHHHHHCHHEEECCCCCCCCC ERASLSFFVEHAPYKFNAKTVENEITNWRYGPNLFWQISPDTSFFSLVRWGRYSDGNHEQ CCCCEEEEEECCCEEECCHHHHHHHCCCEECCCEEEEECCCCHHHHHHHCCCCCCCCHHH QSFSRLEHTSGEFQLAANLFNWRYREDKEIESGYFSPEDFLVINGELIWNKNIFSWLDCN HHHHHHHCCCCCEEEEEEHHCCCCCCCCCHHCCCCCCCCEEEECCEEEECCCCCEEEECC LSTSVGRQRLQGQWDFVYGYGGRCTTTIAEDIFWDLDYRFSNVLGDNSNSRYNSETWRII CCHHHHHHHHCCCEEEEEECCCEEHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEE LRVQL EEEEC >Mature Secondary Structure SIFTMLLNIDSNTTPIEAPIHREEREIKKVWYLAAPQNLNPSLRETSTSSEDVTEGLQT CEEEEEEECCCCCCCCCCCCCHHHHHHEEEEEEECCCCCCCCHHHCCCCHHHHHHHHHH IPETSSTDNEEQQTKNSTSFWDPESVTIDFRYFTTNFEQDNLLIQPSITGTLPNGDRLSL CCCCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCEEECCCCEEECCCCCEEEE TSGFNRFQQPEIDSIQNIPLQFDWEGKIAGLESDIGTGIDWFDRVTPALSFRANSRVNIG HHCCHHCCCCCCCHHHCCCEEEECCCCEECCCCCCCCCCHHHHHHCHHEEECCCCCCCCC ERASLSFFVEHAPYKFNAKTVENEITNWRYGPNLFWQISPDTSFFSLVRWGRYSDGNHEQ CCCCEEEEEECCCEEECCHHHHHHHCCCEECCCEEEEECCCCHHHHHHHCCCCCCCCHHH QSFSRLEHTSGEFQLAANLFNWRYREDKEIESGYFSPEDFLVINGELIWNKNIFSWLDCN HHHHHHHCCCCCEEEEEEHHCCCCCCCCCHHCCCCCCCCEEEECCEEEECCCCCEEEECC LSTSVGRQRLQGQWDFVYGYGGRCTTTIAEDIFWDLDYRFSNVLGDNSNSRYNSETWRII CCHHHHHHHHCCCEEEEEECCCEEHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEE LRVQL EEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA