| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167625014
Identifier: 167625014
GI number: 167625014
Start: 3784964
End: 3785698
Strand: Reverse
Name: 167625014
Synonym: Shal_3102
Alternate gene names: NA
Gene position: 3785698-3784964 (Counterclockwise)
Preceding gene: 167625015
Following gene: 167625013
Centisome position: 72.43
GC content: 45.44
Gene sequence:
>735_bases ATGAAGAAAGTATTATTAATGTTGTTGAGCTTATCTTTTGCGGTTCATGCAGACTCTGAAATGGCTAATGTACAGCCGTT AGACGTGCAAGCACTAGATGTGCAAGCATTAGATGTGCAAGCATTAGATTGGCAAGTGCTGGCGCCAATCATTAACGAGC AAGACGTGCGTTTACCCGATGTAACAGAGAGTCAAAAACGTTTATTGGCGAGCGTGATTCAACTGCAAGATAGCGCAAAA GCGCTTGATAAAGAAAATGCCGTTAAAGCACGCCAACGTCTAATTGATGATGGTGTCGATGTTGATGTGGTGCTCGATGC AAGAGCGCGCTATATGGCGCTTGCGCAGCGAAGAGCCGAGAGTTTAAATACTGAGGTTAATGGTAAGCGGGTTAGCGTGT CAGGCTTTGTAGTACCGACTAAATTTAATGGCGTCAAAGCAACAGAGTTTCTGTTACTGCCTTATGCCGGTGCATGTATC CATATGCCGCCCCCTGCGGCAAACCAAATTGTGAAATTGAGTTATCCGCCGGGGTTTGAAGTTGAGAATGTACAATTTCC AGTGACGGTGCGCGGCACAATCAACGCAGATAAGCAAACTGAGTTAGTGCAATTGGTTGATGGCAAAATGAATGTCACCA TGGGCTATGCTATGGATGCACTAACGATTGAGAAATATTACGCTGATGCGATACCTAGCCCAGCTGCTCAAGATCACCAA GCACATGCTCACTAA
Upstream 100 bases:
>100_bases AGCTTTTATCTATAAGCGGGCTCTACTAGCGGGTTTGAACAATCAGCGTGAAGGGCTATCGGTAAAAGTATATGTAGGAA ACAATATTTTAGAGGGCGCG
Downstream 100 bases:
>100_bases TTGATTGATACACATGGAATGAAAGGCGCGTTAACAAGGAAATCTGTATGAATACAATGCGTTTAGCGGTTTTAATCGGA GGGTGTCTTGCTTGTGGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 244; Mature: 244
Protein sequence:
>244_residues MKKVLLMLLSLSFAVHADSEMANVQPLDVQALDVQALDVQALDWQVLAPIINEQDVRLPDVTESQKRLLASVIQLQDSAK ALDKENAVKARQRLIDDGVDVDVVLDARARYMALAQRRAESLNTEVNGKRVSVSGFVVPTKFNGVKATEFLLLPYAGACI HMPPPAANQIVKLSYPPGFEVENVQFPVTVRGTINADKQTELVQLVDGKMNVTMGYAMDALTIEKYYADAIPSPAAQDHQ AHAH
Sequences:
>Translated_244_residues MKKVLLMLLSLSFAVHADSEMANVQPLDVQALDVQALDVQALDWQVLAPIINEQDVRLPDVTESQKRLLASVIQLQDSAK ALDKENAVKARQRLIDDGVDVDVVLDARARYMALAQRRAESLNTEVNGKRVSVSGFVVPTKFNGVKATEFLLLPYAGACI HMPPPAANQIVKLSYPPGFEVENVQFPVTVRGTINADKQTELVQLVDGKMNVTMGYAMDALTIEKYYADAIPSPAAQDHQ AHAH >Mature_244_residues MKKVLLMLLSLSFAVHADSEMANVQPLDVQALDVQALDVQALDWQVLAPIINEQDVRLPDVTESQKRLLASVIQLQDSAK ALDKENAVKARQRLIDDGVDVDVVLDARARYMALAQRRAESLNTEVNGKRVSVSGFVVPTKFNGVKATEFLLLPYAGACI HMPPPAANQIVKLSYPPGFEVENVQFPVTVRGTINADKQTELVQLVDGKMNVTMGYAMDALTIEKYYADAIPSPAAQDHQ AHAH
Specific function: Unknown
COG id: COG3495
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26742; Mature: 26742
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVLLMLLSLSFAVHADSEMANVQPLDVQALDVQALDVQALDWQVLAPIINEQDVRLPD CHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEEEEEEEEECCCEEEHHHCCCCCCCCCC VTESQKRLLASVIQLQDSAKALDKENAVKARQRLIDDGVDVDVVLDARARYMALAQRRAE CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH SLNTEVNGKRVSVSGFVVPTKFNGVKATEFLLLPYAGACIHMPPPAANQIVKLSYPPGFE HCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEECCCEEEECCCCCCCCEEEEECCCCCC VENVQFPVTVRGTINADKQTELVQLVDGKMNVTMGYAMDALTIEKYYADAIPSPAAQDHQ CCCEEEEEEEEEECCCCCHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCC AHAH CCCC >Mature Secondary Structure MKKVLLMLLSLSFAVHADSEMANVQPLDVQALDVQALDVQALDWQVLAPIINEQDVRLPD CHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEEEEEEEEECCCEEEHHHCCCCCCCCCC VTESQKRLLASVIQLQDSAKALDKENAVKARQRLIDDGVDVDVVLDARARYMALAQRRAE CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH SLNTEVNGKRVSVSGFVVPTKFNGVKATEFLLLPYAGACIHMPPPAANQIVKLSYPPGFE HCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEECCCEEEECCCCCCCCEEEEECCCCCC VENVQFPVTVRGTINADKQTELVQLVDGKMNVTMGYAMDALTIEKYYADAIPSPAAQDHQ CCCEEEEEEEEEECCCCCHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCC AHAH CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA