| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is hisA
Identifier: 167623749
GI number: 167623749
Start: 2175550
End: 2176287
Strand: Reverse
Name: hisA
Synonym: Shal_1819
Alternate gene names: 167623749
Gene position: 2176287-2175550 (Counterclockwise)
Preceding gene: 167623750
Following gene: 167623748
Centisome position: 41.64
GC content: 46.34
Gene sequence:
>738_bases ATGATTATTCCTGCAATCGATCTTATCGACGGTCAAGTCGTTCGCCTCTACCAAGGTGATTACGAACAACAAACAACCTT TAATTTGAGTCCGTTAGATCAACTAAAATCTTATCAGGCCCAAGGGGCCAACTTGCTGCATATCGTCGACTTAACCGGAG CAAAAGATCCTACTAAGCGTCAAACAGCCTTAATCTCTGAACTGGTTAATCACCTAGATACCCCCATTCAAGTCGGTGGT GGAATTCGCACCGAAGCCCAATTAAATGAGCTATTAGAAATTGGTGTCAGCCGTGTTGTTATCGGCTCATTGGCCGTAAA GGAGCCTGAGCTTGTAAAAAGCTGGTTCGAAAAGTATGGCAATGAAGCAATTTGCTTGGCACTCGATGTCAATATCAATG AGCAAGGCGAAAAAATTGTCGCCGTATCGGGCTGGCAAACTGGGGGCGGTAAGAGCCTTGAGTCACTGGTTGAAGAGTTC AAAACGGTTGACCTAAAACATGCGTTAGTCACTGATATTAGTCGTGATGGTACTCTGCAAGGCGCTAATACCGAACTTTA CCGTGAAATTGCCGCTAGCTATCCAGAGATCCAGTGGCAAGCCTCCGGTGGCATCGCCACCTTGGCCGATGTCAATGCAG TAAAAGATAGCGGCGCCGATGGCATCATCATCGGAAAAGCCTTACTCATTAAACAGTTTTCAGTAAAGGAGGCGATTGCA TGTTGGCCAAACGCATAG
Upstream 100 bases:
>100_bases AGATATTGGCAAACTTCCTCACTATGGACAGAAATACCTTTGGCCAATCAAGCACTCAACAAGCGAGTAAACTTGCTAAA AAGCAATTAGAGGCACTGTA
Downstream 100 bases:
>100_bases TCCCTTGCCTCGATGTCAAAGAGGGTAAAGTGGTTAAAGGGGTTCAATTTAGAAACCATGAAATTGTAGGTGATATTGTG CCGCTCGCTAAGCGCTACGC
Product: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Products: NA
Alternate protein names: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
Number of amino acids: Translated: 245; Mature: 245
Protein sequence:
>245_residues MIIPAIDLIDGQVVRLYQGDYEQQTTFNLSPLDQLKSYQAQGANLLHIVDLTGAKDPTKRQTALISELVNHLDTPIQVGG GIRTEAQLNELLEIGVSRVVIGSLAVKEPELVKSWFEKYGNEAICLALDVNINEQGEKIVAVSGWQTGGGKSLESLVEEF KTVDLKHALVTDISRDGTLQGANTELYREIAASYPEIQWQASGGIATLADVNAVKDSGADGIIIGKALLIKQFSVKEAIA CWPNA
Sequences:
>Translated_245_residues MIIPAIDLIDGQVVRLYQGDYEQQTTFNLSPLDQLKSYQAQGANLLHIVDLTGAKDPTKRQTALISELVNHLDTPIQVGG GIRTEAQLNELLEIGVSRVVIGSLAVKEPELVKSWFEKYGNEAICLALDVNINEQGEKIVAVSGWQTGGGKSLESLVEEF KTVDLKHALVTDISRDGTLQGANTELYREIAASYPEIQWQASGGIATLADVNAVKDSGADGIIIGKALLIKQFSVKEAIA CWPNA >Mature_245_residues MIIPAIDLIDGQVVRLYQGDYEQQTTFNLSPLDQLKSYQAQGANLLHIVDLTGAKDPTKRQTALISELVNHLDTPIQVGG GIRTEAQLNELLEIGVSRVVIGSLAVKEPELVKSWFEKYGNEAICLALDVNINEQGEKIVAVSGWQTGGGKSLESLVEEF KTVDLKHALVTDISRDGTLQGANTELYREIAASYPEIQWQASGGIATLADVNAVKDSGADGIIIGKALLIKQFSVKEAIA CWPNA
Specific function: Histidine biosynthesis; fourth step. [C]
COG id: COG0106
COG function: function code E; Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hisA/hisF family
Homologues:
Organism=Escherichia coli, GI87082028, Length=245, Percent_Identity=59.1836734693878, Blast_Score=300, Evalue=4e-83, Organism=Escherichia coli, GI1788336, Length=234, Percent_Identity=25.6410256410256, Blast_Score=68, Evalue=7e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HIS4_SHEHH (B0TQY9)
Other databases:
- EMBL: CP000931 - RefSeq: YP_001674043.1 - ProteinModelPortal: B0TQY9 - GeneID: 5904616 - GenomeReviews: CP000931_GR - KEGG: shl:Shal_1819 - HOGENOM: HBG541613 - OMA: SIIYTDI - ProtClustDB: PRK00748 - BioCyc: SHAL458817:SHAL_1819-MONOMER - GO: GO:0005737 - HAMAP: MF_01014 - InterPro: IPR013785 - InterPro: IPR006062 - InterPro: IPR006063 - InterPro: IPR023016 - InterPro: IPR011060 - Gene3D: G3DSA:3.20.20.70 - TIGRFAMs: TIGR00007
Pfam domain/function: PF00977 His_biosynth; SSF51366 RibP_bind_barrel
EC number: =5.3.1.16
Molecular weight: Translated: 26469; Mature: 26469
Theoretical pI: Translated: 4.43; Mature: 4.43
Prosite motif: NA
Important sites: ACT_SITE 7-7 ACT_SITE 129-129
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIPAIDLIDGQVVRLYQGDYEQQTTFNLSPLDQLKSYQAQGANLLHIVDLTGAKDPTKR CCCCCEECCCCCEEEEECCCCCCCCEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHH QTALISELVNHLDTPIQVGGGIRTEAQLNELLEIGVSRVVIGSLAVKEPELVKSWFEKYG HHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC NEAICLALDVNINEQGEKIVAVSGWQTGGGKSLESLVEEFKTVDLKHALVTDISRDGTLQ CCEEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GANTELYREIAASYPEIQWQASGGIATLADVNAVKDSGADGIIIGKALLIKQFSVKEAIA CCCHHHHHHHHHCCCCEEEECCCCEEEEHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHH CWPNA CCCCC >Mature Secondary Structure MIIPAIDLIDGQVVRLYQGDYEQQTTFNLSPLDQLKSYQAQGANLLHIVDLTGAKDPTKR CCCCCEECCCCCEEEEECCCCCCCCEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHH QTALISELVNHLDTPIQVGGGIRTEAQLNELLEIGVSRVVIGSLAVKEPELVKSWFEKYG HHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC NEAICLALDVNINEQGEKIVAVSGWQTGGGKSLESLVEEFKTVDLKHALVTDISRDGTLQ CCEEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GANTELYREIAASYPEIQWQASGGIATLADVNAVKDSGADGIIIGKALLIKQFSVKEAIA CCCHHHHHHHHHCCCCEEEECCCCEEEEHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHH CWPNA CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA