| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159901180
Identifier: 159901180
GI number: 159901180
Start: 5965335
End: 5966135
Strand: Reverse
Name: 159901180
Synonym: Haur_4668
Alternate gene names: NA
Gene position: 5966135-5965335 (Counterclockwise)
Preceding gene: 159901181
Following gene: 159901178
Centisome position: 94.01
GC content: 52.43
Gene sequence:
>801_bases ATGCAGATCAATGTAACCTACATCGGCACAGCCACGGTCTTGTTGGAAATTGACGGCCTGCGGATTTTGACCGATCCGGT GTTTGATCCGGCTGGGAGTGCGCGGGTTTACCAGGTGCGGCCACAGGTTGAATTTGCGTTGTACAAGCAAACCCCAGCGG CCTTGCCAGCAAGCGAAATTGGCGCGATTGATCTGGTTTTGCTCTCGCACGACGATCATTATGATAATTTGGATGATGCA GGCCGCGCCTTGTTGCCGAACGCAGGCCATGTGTTGACCACCGAATCGGGCCGCCAGCGCTTGCAACAACAGGGCGCAAC CAACGTGCAAGGCCTCGCCGAGTGGCAATCGATTACAGTTAACACGCCCCAAGACTTGCCGCTGACGATCACCGCCGTGC CAGCCCAACATGGCCCGGTCGAGTTGCTACCGATTATTGGCGAGGTGATTGGCTTTGTGTTGGAATACCCAGCTTTTGAG CATGGGCCAATTTATATTTCTGGCGACACCGTTTTGTTTGATGGAATTACGGCGATTGCTGAACGCTACGCGATTGGTAC GGTCTTTTTGCATGTTGGGGCAGCCCAATTTGCGCCAACCGGCCCAACTTTATTTACCTTTGATGCAACTCAGGCCTATC AAGCGGCGCAACTACTCAAGCCCCAAAGCTTGATTCCAATTCATTTTGATGGTTGGCAGCACTTTAGCCAAGGCCAAGCA GAAATTGATCAAGCTTTTGCTGGGAGCGACATTCAACCACGTTGGCTGGATTTAGGGGTTGAAACTAAGCTAACGGTTTG A
Upstream 100 bases:
>100_bases CACCGCCCGCGCCGCCATCGACAATTTAATTGCCACCTATCGCAGCTAAAATTTTTTAGCATCAATAAAACACGAACGTC CGTATTTATAAGGAGTTGTT
Downstream 100 bases:
>100_bases GATTCTTTCACTCCCAGCCCTCATCTCGCGGATGGGAGAGAGGTTTATTACAATACAAGGGTAGCTTTTAAGACCCCTCA CCCCTAGCCCCTCGCCCACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 266; Mature: 266
Protein sequence:
>266_residues MQINVTYIGTATVLLEIDGLRILTDPVFDPAGSARVYQVRPQVEFALYKQTPAALPASEIGAIDLVLLSHDDHYDNLDDA GRALLPNAGHVLTTESGRQRLQQQGATNVQGLAEWQSITVNTPQDLPLTITAVPAQHGPVELLPIIGEVIGFVLEYPAFE HGPIYISGDTVLFDGITAIAERYAIGTVFLHVGAAQFAPTGPTLFTFDATQAYQAAQLLKPQSLIPIHFDGWQHFSQGQA EIDQAFAGSDIQPRWLDLGVETKLTV
Sequences:
>Translated_266_residues MQINVTYIGTATVLLEIDGLRILTDPVFDPAGSARVYQVRPQVEFALYKQTPAALPASEIGAIDLVLLSHDDHYDNLDDA GRALLPNAGHVLTTESGRQRLQQQGATNVQGLAEWQSITVNTPQDLPLTITAVPAQHGPVELLPIIGEVIGFVLEYPAFE HGPIYISGDTVLFDGITAIAERYAIGTVFLHVGAAQFAPTGPTLFTFDATQAYQAAQLLKPQSLIPIHFDGWQHFSQGQA EIDQAFAGSDIQPRWLDLGVETKLTV >Mature_266_residues MQINVTYIGTATVLLEIDGLRILTDPVFDPAGSARVYQVRPQVEFALYKQTPAALPASEIGAIDLVLLSHDDHYDNLDDA GRALLPNAGHVLTTESGRQRLQQQGATNVQGLAEWQSITVNTPQDLPLTITAVPAQHGPVELLPIIGEVIGFVLEYPAFE HGPIYISGDTVLFDGITAIAERYAIGTVFLHVGAAQFAPTGPTLFTFDATQAYQAAQLLKPQSLIPIHFDGWQHFSQGQA EIDQAFAGSDIQPRWLDLGVETKLTV
Specific function: Unknown
COG id: COG2220
COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28806; Mature: 28806
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQINVTYIGTATVLLEIDGLRILTDPVFDPAGSARVYQVRPQVEFALYKQTPAALPASEI CEEEEEEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCC GAIDLVLLSHDDHYDNLDDAGRALLPNAGHVLTTESGRQRLQQQGATNVQGLAEWQSITV CEEEEEEEECCCCCCCCCCCCCEECCCCCEEEECHHHHHHHHHCCCCCCCHHHCEEEEEE NTPQDLPLTITAVPAQHGPVELLPIIGEVIGFVLEYPAFEHGPIYISGDTVLFDGITAIA CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEEHHHHHHH ERYAIGTVFLHVGAAQFAPTGPTLFTFDATQAYQAAQLLKPQSLIPIHFDGWQHFSQGQA HHHHHEEEEEEECCHHCCCCCCEEEEECCHHHHHHHHHCCCCCEEEEEECCCHHHCCCHH EIDQAFAGSDIQPRWLDLGVETKLTV HHHHHHCCCCCCCCEEECCCEEEECC >Mature Secondary Structure MQINVTYIGTATVLLEIDGLRILTDPVFDPAGSARVYQVRPQVEFALYKQTPAALPASEI CEEEEEEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCC GAIDLVLLSHDDHYDNLDDAGRALLPNAGHVLTTESGRQRLQQQGATNVQGLAEWQSITV CEEEEEEEECCCCCCCCCCCCCEECCCCCEEEECHHHHHHHHHCCCCCCCHHHCEEEEEE NTPQDLPLTITAVPAQHGPVELLPIIGEVIGFVLEYPAFEHGPIYISGDTVLFDGITAIA CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEEHHHHHHH ERYAIGTVFLHVGAAQFAPTGPTLFTFDATQAYQAAQLLKPQSLIPIHFDGWQHFSQGQA HHHHHEEEEEEECCHHCCCCCCEEEEECCHHHHHHHHHCCCCCEEEEEECCCHHHCCCHH EIDQAFAGSDIQPRWLDLGVETKLTV HHHHHHCCCCCCCCEEECCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA