| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159900499
Identifier: 159900499
GI number: 159900499
Start: 5085132
End: 5086451
Strand: Direct
Name: 159900499
Synonym: Haur_3986
Alternate gene names: NA
Gene position: 5085132-5086451 (Clockwise)
Preceding gene: 159900498
Following gene: 159900500
Centisome position: 80.12
GC content: 51.36
Gene sequence:
>1320_bases ATGACCAGTTATAGCATCACTGGGCGGGTGGTTCGGACGATTGATCTTGCGCCGCTTGCCAACATTAGCGTGCGGTTTAT CTCACAAGCAGGCTATCTGAGCAATGTGGCCAATCGCAGCCTTTTGCCAGCAGGCCAGGTCGATTGGACGCGCTCGCTGA CAGGGTTTAGTGGCACGCGCTGGGAATGTTGGGAGCAGCAGATCAACAGCAAAGTAGCAATTGCTTGGGGCGATTTTCGC GATGGTGCGCTGATCTACAACCCACATTTGAGCGATGATGGACGGGTGTTTCATAGCGATAAAACCTATTTGATGCCCGA AGTTTCGCCAGCCCAAGAAGTGAGCTGGACGCGCCAAATCACTGGGTTTGCTGGCTCGCGTTGGGATTGCTGGGTACAAT ATATCGATAAGCGTGTGCCAATTAGCTGGGAATCGTTTCGAGATAATGCTTTGATTCATAATCCCCAACTGGCGGCTGAT GGACGTTTATTCCAAACCGCCAAAACCTATCTGATTCCCGATGTCGCGCCAGTGGCCCGTGCTGCCTGCGAAGTCAAAAC CGATGCTCAAGGCAATTATCGCTTTGACAATATTGGAGCAGGCGCGGTTGGCTTGCTCGAAGTCAATGTGGCTGGTTATA CGCCTGTTCGCGTGCCAGTAATTGTCAACAATACAATTAATCAACCGATCAATGTGCGCGGTGGTGGCAGCGGTGTGCGT TCGGCTCACCCTAGCTATAATGCTTTACATCCCAAAGTGCGGGCGATTATTGATCAAGCCTTGTTTATGCTGGGCGATGA AAAAACCGTCTACGATGCGCTGCCCACGAATTTGCAACAAATGTGTTATGGAGCGCAATTCGCCAGCAATCCCAATCATC AATACTACAAAGATATTGTTTGTGCCGATTTGGTGAGCATTTGTTTGGCCGCAGCAGGCTTTAATGTCAATTGGAACAGC GGAGCCAATCCCCATATGGCCCAGCATTATGCACCCGGCCCCGCCACCCTGCAAGAAATTACCGATGCCAACGATTGGCA ACCAGGCGATGTGTTGGTATTTGGCAATAATGGCGCGGCGCGAGCTGGCCATGTGACGTTGTATGTTGGCCCTTTCCAAG GCACCGATCGTTCAGGCACAAACTATTCGTTGAGCGCCAATTTCGATGTGGTTGAGGCCAGCATGAACTTTGACCTTGCC AATGGCCAGCGTTGGGGCTTGGGCAACATCGCCACCACCCGCCAACAATGTTTACAAGGCAAACGTGGCTATCAATGGGT CAAGCGGGTGCGTTTGAAAGAAGTCGCAGCATTAATCTAA
Upstream 100 bases:
>100_bases CCCTCATCCTTCATCCCTCATACTTTCCTTGGGCTATTGCAATCTCCGAGCGCCGCCGCTACCATTGAACTACGAAAGCA TCTAGTAGGGAGCCAACGGC
Downstream 100 bases:
>100_bases TATTGCTGCGCTCAAATGAAGTGACGATCTGCAACCGATTGCTGATTCGCAGGTGGGCTAAACTGCGCTACAATGGGGCA TATCGTCATTTCTCAATGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 439; Mature: 438
Protein sequence:
>439_residues MTSYSITGRVVRTIDLAPLANISVRFISQAGYLSNVANRSLLPAGQVDWTRSLTGFSGTRWECWEQQINSKVAIAWGDFR DGALIYNPHLSDDGRVFHSDKTYLMPEVSPAQEVSWTRQITGFAGSRWDCWVQYIDKRVPISWESFRDNALIHNPQLAAD GRLFQTAKTYLIPDVAPVARAACEVKTDAQGNYRFDNIGAGAVGLLEVNVAGYTPVRVPVIVNNTINQPINVRGGGSGVR SAHPSYNALHPKVRAIIDQALFMLGDEKTVYDALPTNLQQMCYGAQFASNPNHQYYKDIVCADLVSICLAAAGFNVNWNS GANPHMAQHYAPGPATLQEITDANDWQPGDVLVFGNNGAARAGHVTLYVGPFQGTDRSGTNYSLSANFDVVEASMNFDLA NGQRWGLGNIATTRQQCLQGKRGYQWVKRVRLKEVAALI
Sequences:
>Translated_439_residues MTSYSITGRVVRTIDLAPLANISVRFISQAGYLSNVANRSLLPAGQVDWTRSLTGFSGTRWECWEQQINSKVAIAWGDFR DGALIYNPHLSDDGRVFHSDKTYLMPEVSPAQEVSWTRQITGFAGSRWDCWVQYIDKRVPISWESFRDNALIHNPQLAAD GRLFQTAKTYLIPDVAPVARAACEVKTDAQGNYRFDNIGAGAVGLLEVNVAGYTPVRVPVIVNNTINQPINVRGGGSGVR SAHPSYNALHPKVRAIIDQALFMLGDEKTVYDALPTNLQQMCYGAQFASNPNHQYYKDIVCADLVSICLAAAGFNVNWNS GANPHMAQHYAPGPATLQEITDANDWQPGDVLVFGNNGAARAGHVTLYVGPFQGTDRSGTNYSLSANFDVVEASMNFDLA NGQRWGLGNIATTRQQCLQGKRGYQWVKRVRLKEVAALI >Mature_438_residues TSYSITGRVVRTIDLAPLANISVRFISQAGYLSNVANRSLLPAGQVDWTRSLTGFSGTRWECWEQQINSKVAIAWGDFRD GALIYNPHLSDDGRVFHSDKTYLMPEVSPAQEVSWTRQITGFAGSRWDCWVQYIDKRVPISWESFRDNALIHNPQLAADG RLFQTAKTYLIPDVAPVARAACEVKTDAQGNYRFDNIGAGAVGLLEVNVAGYTPVRVPVIVNNTINQPINVRGGGSGVRS AHPSYNALHPKVRAIIDQALFMLGDEKTVYDALPTNLQQMCYGAQFASNPNHQYYKDIVCADLVSICLAAAGFNVNWNSG ANPHMAQHYAPGPATLQEITDANDWQPGDVLVFGNNGAARAGHVTLYVGPFQGTDRSGTNYSLSANFDVVEASMNFDLAN GQRWGLGNIATTRQQCLQGKRGYQWVKRVRLKEVAALI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48232; Mature: 48101
Theoretical pI: Translated: 7.81; Mature: 7.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSYSITGRVVRTIDLAPLANISVRFISQAGYLSNVANRSLLPAGQVDWTRSLTGFSGTR CCCCCCCCEEEEEEECCCCCCCEEEEEHHCCHHHHHHCCCCCCCCCCCHHHCCCCCCCCC WECWEQQINSKVAIAWGDFRDGALIYNPHLSDDGRVFHSDKTYLMPEVSPAQEVSWTRQI HHHHHHHCCCEEEEEECCCCCCEEEECCCCCCCCCEEECCCCEECCCCCCHHHHHHHHHH TGFAGSRWDCWVQYIDKRVPISWESFRDNALIHNPQLAADGRLFQTAKTYLIPDVAPVAR CCCCCCCHHHHHHHHHCCCCCCHHHHCCCEEEECCCCCCCCCEEEHHHHHCCCCHHHHHH AACEVKTDAQGNYRFDNIGAGAVGLLEVNVAGYTPVRVPVIVNNTINQPINVRGGGSGVR HHHEEECCCCCCEEECCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCEEECCCCCCCC SAHPSYNALHPKVRAIIDQALFMLGDEKTVYDALPTNLQQMCYGAQFASNPNHQYYKDIV CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHCCHHCCCCCHHHHHHHH CADLVSICLAAAGFNVNWNSGANPHMAQHYAPGPATLQEITDANDWQPGDVLVFGNNGAA HHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCC RAGHVTLYVGPFQGTDRSGTNYSLSANFDVVEASMNFDLANGQRWGLGNIATTRQQCLQG CCCEEEEEEECCCCCCCCCCCEEEECCCEEEEEEECEEECCCCCCCCCCHHHHHHHHHCC KRGYQWVKRVRLKEVAALI CCHHHHHHHHHHHHHHHCC >Mature Secondary Structure TSYSITGRVVRTIDLAPLANISVRFISQAGYLSNVANRSLLPAGQVDWTRSLTGFSGTR CCCCCCCEEEEEEECCCCCCCEEEEEHHCCHHHHHHCCCCCCCCCCCHHHCCCCCCCCC WECWEQQINSKVAIAWGDFRDGALIYNPHLSDDGRVFHSDKTYLMPEVSPAQEVSWTRQI HHHHHHHCCCEEEEEECCCCCCEEEECCCCCCCCCEEECCCCEECCCCCCHHHHHHHHHH TGFAGSRWDCWVQYIDKRVPISWESFRDNALIHNPQLAADGRLFQTAKTYLIPDVAPVAR CCCCCCCHHHHHHHHHCCCCCCHHHHCCCEEEECCCCCCCCCEEEHHHHHCCCCHHHHHH AACEVKTDAQGNYRFDNIGAGAVGLLEVNVAGYTPVRVPVIVNNTINQPINVRGGGSGVR HHHEEECCCCCCEEECCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCEEECCCCCCCC SAHPSYNALHPKVRAIIDQALFMLGDEKTVYDALPTNLQQMCYGAQFASNPNHQYYKDIV CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHCCHHCCCCCHHHHHHHH CADLVSICLAAAGFNVNWNSGANPHMAQHYAPGPATLQEITDANDWQPGDVLVFGNNGAA HHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCC RAGHVTLYVGPFQGTDRSGTNYSLSANFDVVEASMNFDLANGQRWGLGNIATTRQQCLQG CCCEEEEEEECCCCCCCCCCCEEEECCCEEEEEEECEEECCCCCCCCCCHHHHHHHHHCC KRGYQWVKRVRLKEVAALI CCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA