| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159898718
Identifier: 159898718
GI number: 159898718
Start: 2788317
End: 2790902
Strand: Reverse
Name: 159898718
Synonym: Haur_2197
Alternate gene names: NA
Gene position: 2790902-2788317 (Counterclockwise)
Preceding gene: 159898724
Following gene: 159898716
Centisome position: 43.97
GC content: 49.85
Gene sequence:
>2586_bases ATGATCTACCCACGTGTGAAACGCTGGTTATCGATGTTAATCGGGACGGTCTTGCTCGCTCAATTGGTGCTAATTCCGCA CCATGCTACGGCTCAAACCCGCTCGTCTGGACGCGAACCCGTGGTGGTTGCAACTGAGAGTAAAGGCTACTATCGCTATC CAGATATGGGCATCTATCGCTATGCCTGGTCATCAACGGTGGATACGCAATCAACGACTCAAACGGCGGCTACTCGACCA CGCCAAGATGTCAATCGCTTGGGTATGACTGGGGTTGTCGAAATTGAGCGCTACGCCAGTGGCCGCAGCACCAATCTGTT GCGAGCTAAACTGGTTAATCCTAAGATGTATACCATCACCGAAACAGGCTGGCAGTTGGTTACTGATCGTGAGGTAGTTG GCCCAGACTTCGACAAACAAGTTGAAGTTCCTTTCTATTTTCAACAACATACGACTGGTGAAGTTGTCGGCATGTATTTT GATCGGACAGATAGCGAAGAAGTACGAAATATGAAACGGGCGGCGGTGTCGCAGTTGGCGATGCAGCTTGAATACAGCCC CACACCAAGCTGTGATGATCGCACGATTACGTGTGCTCAGCCTTACAAACGGCTAGAAACTGATGTAACGGGAACCTACA CAGCCGCCTATGCTGCGCGGATTGTAGATAGCCAGTATGTGGAAATTACGAAAACGCGAGATCAAGATTCATATACGGCC TTTGCTGATCGCACGATTGTTGATGCTCGTGATACCCTGCTCTCCAGTAAACATACGGCGATGTATGATCTACGGGCCGG CGTATTGGTGCGCAATAGCAATCAACAAACCATTCGCAATCGCTTGGGGAGTGCCGAGCAAGCTCAGTATGCTGGCTCTG GCTATGGCATCGAATCGGGAATTAATGCCAATGAGAGCATAAGCCTTGATGGTGTTACCACAGGCGCATTGGATTCGGTA ATCAGTTTATCGGGCGATGAACAGACCAGTGAATTGGCTGCCCTCATGCGGCGCACCGAGGGGCGCGATTATGTTGCTAC ACCATTAGTAGCGACCATTGTTGAGCAGGCTGCTGTTGCTGATCGCGGTTTGGCGGCGAATGACTTAACCAGTGCTTTGG CTCTTGTAGCCCAAAATCCTCACGATCCTAACAATGTGATCGTGCTGCGGGCGACGCTTAATACGCTTGATCGAAGTATG CAGCAGCTTGATCAACGCTTGAGCAAAGGGACAATCGCCACCAACCTCTATGAACCTTTAATTGGCGCTCTGACTGGAGT GATTGATCCCCAAGCCCAAGCGTTGGTGATTAAACACTTTATTCAATCGCCTAGCGTTGCAGCGTCAATTCGTACCCAAG CCTTGACTGCCTTGACGATCTTCAAAAAGCCTAGCCTAGAAACGATTCGCTTTGTTACAACCTTGGCTGATCAAAATACT CCTGAGGGAATGCAAGCATTGCTGGTGCTTGGTGCTATAGCAGGTACGATTCAACACGAACAGCCAGCCCAAGCTCGCGA TCTAGCGACGATCATTGAAGCAACATTGACCCATGCCAAGAGCGATACTGAGCGTGATTTGGCCTTACGCGCTTTGGGCA ATGCCGGAACCGCGACTGATCTTGCAGTTATTCGTCCATACCTGGCGGATGCCAACCAGATTGTTCGTACCTCTGCAATT GATGCCCTGCGCAAATTTCCAGCAGCCGATACCAACGCGCTTCTCAACACCGCGTATCGTAGCGATACAAGCGAGATTGT CCGTCATACGGCGCGTGAATTGCTGTATGCCAACGGTGATAGCCCAAGTTTGAATGCTTTCGATTGGAATTGGCAACAAT TTATTGGCGGCGGTGATCTCAAGGGCGAATTGAAATCACGAGTATATGTGAGCGATGGCCCCGATATTACAGCCTTGGCC CGAGGCGAAGCGAAAGCTCATGCTTGGTCGTGGAGCTATACACTGGCCGAAGCCCAAGCCTCAACCTATGTTCAGACCGA GCATTCAATTAAATATCGCTACTTTGAAGCGTATGTCAAGGTCTTGGGTAACAATGTCTTTACCCCAATCAAAGAACGCC TGCAATGTGGGGTTGAGCGCACAGGCAACTTATATCAAACGACGATCAATTTCTTCTCGCTTACGAAAACCTTTATGGTC GGGCCAGTGCCTGTTCAACTTGGCTTGACCGCCAGTGGAACGATCTCAATTCCTTGGAAAATCGTGGCAAGTGCCTGTGA TGTGCCGATTTCGGCCAATGCCAATATCTCGATTACGCCAACGGTCTGGGCTTCAGCCAGCGCAACGGCTGCCGTTACGA TCTTTGTCGCTCGTGGTGGGGTTGGAATTACCGCTGATTTCTTGAAGACCGGCATCGAAGCGAAGGCCAGTGCATCCTAT CATATTATCAATGGTTTTCACGGTAGTATTAATCTGAATGTCTCACTTCAGCCGATGGCCGTTCGCATCTTTTTGTGGTA TCAATTGCGCAAATTGAATGGAAGCTGGAAACCACGTAACGAGTGGACGCTTTGGAATTGGAGTGCTCCAACCCAAACTT GGCCGATTTGGAATCATAGTTTCTAA
Upstream 100 bases:
>100_bases CGGTGTAGCTTGAGGATGGTTGTATGGTTTATGGATGAGCGCATCCAAGATTCGGCTTCGTGCAGTGTGTCGTGCTTAAT TGGTCTGGAGGAATCTAGTA
Downstream 100 bases:
>100_bases GGTGGTGCCTTAGGCCACGCATCTTTCCAAATATCATTCAGCCATCTCTTGAAAGTACCCCTCGCCTGCCGAGCAGGCGA GGGGTACTTTGTAGGTTTTT
Product: lipid transport protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 861; Mature: 861
Protein sequence:
>861_residues MIYPRVKRWLSMLIGTVLLAQLVLIPHHATAQTRSSGREPVVVATESKGYYRYPDMGIYRYAWSSTVDTQSTTQTAATRP RQDVNRLGMTGVVEIERYASGRSTNLLRAKLVNPKMYTITETGWQLVTDREVVGPDFDKQVEVPFYFQQHTTGEVVGMYF DRTDSEEVRNMKRAAVSQLAMQLEYSPTPSCDDRTITCAQPYKRLETDVTGTYTAAYAARIVDSQYVEITKTRDQDSYTA FADRTIVDARDTLLSSKHTAMYDLRAGVLVRNSNQQTIRNRLGSAEQAQYAGSGYGIESGINANESISLDGVTTGALDSV ISLSGDEQTSELAALMRRTEGRDYVATPLVATIVEQAAVADRGLAANDLTSALALVAQNPHDPNNVIVLRATLNTLDRSM QQLDQRLSKGTIATNLYEPLIGALTGVIDPQAQALVIKHFIQSPSVAASIRTQALTALTIFKKPSLETIRFVTTLADQNT PEGMQALLVLGAIAGTIQHEQPAQARDLATIIEATLTHAKSDTERDLALRALGNAGTATDLAVIRPYLADANQIVRTSAI DALRKFPAADTNALLNTAYRSDTSEIVRHTARELLYANGDSPSLNAFDWNWQQFIGGGDLKGELKSRVYVSDGPDITALA RGEAKAHAWSWSYTLAEAQASTYVQTEHSIKYRYFEAYVKVLGNNVFTPIKERLQCGVERTGNLYQTTINFFSLTKTFMV GPVPVQLGLTASGTISIPWKIVASACDVPISANANISITPTVWASASATAAVTIFVARGGVGITADFLKTGIEAKASASY HIINGFHGSINLNVSLQPMAVRIFLWYQLRKLNGSWKPRNEWTLWNWSAPTQTWPIWNHSF
Sequences:
>Translated_861_residues MIYPRVKRWLSMLIGTVLLAQLVLIPHHATAQTRSSGREPVVVATESKGYYRYPDMGIYRYAWSSTVDTQSTTQTAATRP RQDVNRLGMTGVVEIERYASGRSTNLLRAKLVNPKMYTITETGWQLVTDREVVGPDFDKQVEVPFYFQQHTTGEVVGMYF DRTDSEEVRNMKRAAVSQLAMQLEYSPTPSCDDRTITCAQPYKRLETDVTGTYTAAYAARIVDSQYVEITKTRDQDSYTA FADRTIVDARDTLLSSKHTAMYDLRAGVLVRNSNQQTIRNRLGSAEQAQYAGSGYGIESGINANESISLDGVTTGALDSV ISLSGDEQTSELAALMRRTEGRDYVATPLVATIVEQAAVADRGLAANDLTSALALVAQNPHDPNNVIVLRATLNTLDRSM QQLDQRLSKGTIATNLYEPLIGALTGVIDPQAQALVIKHFIQSPSVAASIRTQALTALTIFKKPSLETIRFVTTLADQNT PEGMQALLVLGAIAGTIQHEQPAQARDLATIIEATLTHAKSDTERDLALRALGNAGTATDLAVIRPYLADANQIVRTSAI DALRKFPAADTNALLNTAYRSDTSEIVRHTARELLYANGDSPSLNAFDWNWQQFIGGGDLKGELKSRVYVSDGPDITALA RGEAKAHAWSWSYTLAEAQASTYVQTEHSIKYRYFEAYVKVLGNNVFTPIKERLQCGVERTGNLYQTTINFFSLTKTFMV GPVPVQLGLTASGTISIPWKIVASACDVPISANANISITPTVWASASATAAVTIFVARGGVGITADFLKTGIEAKASASY HIINGFHGSINLNVSLQPMAVRIFLWYQLRKLNGSWKPRNEWTLWNWSAPTQTWPIWNHSF >Mature_861_residues MIYPRVKRWLSMLIGTVLLAQLVLIPHHATAQTRSSGREPVVVATESKGYYRYPDMGIYRYAWSSTVDTQSTTQTAATRP RQDVNRLGMTGVVEIERYASGRSTNLLRAKLVNPKMYTITETGWQLVTDREVVGPDFDKQVEVPFYFQQHTTGEVVGMYF DRTDSEEVRNMKRAAVSQLAMQLEYSPTPSCDDRTITCAQPYKRLETDVTGTYTAAYAARIVDSQYVEITKTRDQDSYTA FADRTIVDARDTLLSSKHTAMYDLRAGVLVRNSNQQTIRNRLGSAEQAQYAGSGYGIESGINANESISLDGVTTGALDSV ISLSGDEQTSELAALMRRTEGRDYVATPLVATIVEQAAVADRGLAANDLTSALALVAQNPHDPNNVIVLRATLNTLDRSM QQLDQRLSKGTIATNLYEPLIGALTGVIDPQAQALVIKHFIQSPSVAASIRTQALTALTIFKKPSLETIRFVTTLADQNT PEGMQALLVLGAIAGTIQHEQPAQARDLATIIEATLTHAKSDTERDLALRALGNAGTATDLAVIRPYLADANQIVRTSAI DALRKFPAADTNALLNTAYRSDTSEIVRHTARELLYANGDSPSLNAFDWNWQQFIGGGDLKGELKSRVYVSDGPDITALA RGEAKAHAWSWSYTLAEAQASTYVQTEHSIKYRYFEAYVKVLGNNVFTPIKERLQCGVERTGNLYQTTINFFSLTKTFMV GPVPVQLGLTASGTISIPWKIVASACDVPISANANISITPTVWASASATAAVTIFVARGGVGITADFLKTGIEAKASASY HIINGFHGSINLNVSLQPMAVRIFLWYQLRKLNGSWKPRNEWTLWNWSAPTQTWPIWNHSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 94541; Mature: 94541
Theoretical pI: Translated: 7.44; Mature: 7.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIYPRVKRWLSMLIGTVLLAQLVLIPHHATAQTRSSGREPVVVATESKGYYRYPDMGIYR CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEECCCCEEECCCCCEEE YAWSSTVDTQSTTQTAATRPRQDVNRLGMTGVVEIERYASGRSTNLLRAKLVNPKMYTIT EEECCCCCCCCCHHHHHCCCHHHHHHCCCCCEEEEHHHCCCCCCCEEEEEECCCEEEEEE ETGWQLVTDREVVGPDFDKQVEVPFYFQQHTTGEVVGMYFDRTDSEEVRNMKRAAVSQLA CCCCEEEECCCCCCCCCCCEECCCEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH MQLEYSPTPSCDDRTITCAQPYKRLETDVTGTYTAAYAARIVDSQYVEITKTRDQDSYTA HHEECCCCCCCCCCEEECCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCEEH FADRTIVDARDTLLSSKHTAMYDLRAGVLVRNSNQQTIRNRLGSAEQAQYAGSGYGIESG HHCCEEEHHHHHHHCCCCCEEEEEECCEEEECCCHHHHHHHCCCCHHHHHCCCCCCCCCC INANESISLDGVTTGALDSVISLSGDEQTSELAALMRRTEGRDYVATPLVATIVEQAAVA CCCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHH DRGLAANDLTSALALVAQNPHDPNNVIVLRATLNTLDRSMQQLDQRLSKGTIATNLYEPL HCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHH IGALTGVIDPQAQALVIKHFIQSPSVAASIRTQALTALTIFKKPSLETIRFVTTLADQNT HHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHCCCC PEGMQALLVLGAIAGTIQHEQPAQARDLATIIEATLTHAKSDTERDLALRALGNAGTATD CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHH LAVIRPYLADANQIVRTSAIDALRKFPAADTNALLNTAYRSDTSEIVRHTARELLYANGD HHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHEEECCC SPSLNAFDWNWQQFIGGGDLKGELKSRVYVSDGPDITALARGEAKAHAWSWSYTLAEAQA CCCCCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCEEEEEEEEEHHHHH STYVQTEHSIKYRYFEAYVKVLGNNVFTPIKERLQCGVERTGNLYQTTINFFSLTKTFMV HHEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHCCCEEEHHHHHHHHHHHHEE GPVPVQLGLTASGTISIPWKIVASACDVPISANANISITPTVWASASATAAVTIFVARGG CCEEEEEECCCCCEEECCHHHHHHHCCCCCCCCCCEEECCCEECCCCCCEEEEEEEECCC VGITADFLKTGIEAKASASYHIINGFHGSINLNVSLQPMAVRIFLWYQLRKLNGSWKPRN CCEEHHHHHCCCCCCCCCCEEEEECCCCEEEEEEEECHHEEEHHHHHHHHHCCCCCCCCC EWTLWNWSAPTQTWPIWNHSF CEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure MIYPRVKRWLSMLIGTVLLAQLVLIPHHATAQTRSSGREPVVVATESKGYYRYPDMGIYR CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEECCCCEEECCCCCEEE YAWSSTVDTQSTTQTAATRPRQDVNRLGMTGVVEIERYASGRSTNLLRAKLVNPKMYTIT EEECCCCCCCCCHHHHHCCCHHHHHHCCCCCEEEEHHHCCCCCCCEEEEEECCCEEEEEE ETGWQLVTDREVVGPDFDKQVEVPFYFQQHTTGEVVGMYFDRTDSEEVRNMKRAAVSQLA CCCCEEEECCCCCCCCCCCEECCCEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH MQLEYSPTPSCDDRTITCAQPYKRLETDVTGTYTAAYAARIVDSQYVEITKTRDQDSYTA HHEECCCCCCCCCCEEECCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCEEH FADRTIVDARDTLLSSKHTAMYDLRAGVLVRNSNQQTIRNRLGSAEQAQYAGSGYGIESG HHCCEEEHHHHHHHCCCCCEEEEEECCEEEECCCHHHHHHHCCCCHHHHHCCCCCCCCCC INANESISLDGVTTGALDSVISLSGDEQTSELAALMRRTEGRDYVATPLVATIVEQAAVA CCCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHH DRGLAANDLTSALALVAQNPHDPNNVIVLRATLNTLDRSMQQLDQRLSKGTIATNLYEPL HCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHH IGALTGVIDPQAQALVIKHFIQSPSVAASIRTQALTALTIFKKPSLETIRFVTTLADQNT HHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHCCCC PEGMQALLVLGAIAGTIQHEQPAQARDLATIIEATLTHAKSDTERDLALRALGNAGTATD CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHH LAVIRPYLADANQIVRTSAIDALRKFPAADTNALLNTAYRSDTSEIVRHTARELLYANGD HHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHEEECCC SPSLNAFDWNWQQFIGGGDLKGELKSRVYVSDGPDITALARGEAKAHAWSWSYTLAEAQA CCCCCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCEEEEEEEEEHHHHH STYVQTEHSIKYRYFEAYVKVLGNNVFTPIKERLQCGVERTGNLYQTTINFFSLTKTFMV HHEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHCCCEEEHHHHHHHHHHHHEE GPVPVQLGLTASGTISIPWKIVASACDVPISANANISITPTVWASASATAAVTIFVARGG CCEEEEEECCCCCEEECCHHHHHHHCCCCCCCCCCEEECCCEECCCCCCEEEEEEEECCC VGITADFLKTGIEAKASASYHIINGFHGSINLNVSLQPMAVRIFLWYQLRKLNGSWKPRN CCEEHHHHHCCCCCCCCCCEEEEECCCCEEEEEEEECHHEEEHHHHHHHHHCCCCCCCCC EWTLWNWSAPTQTWPIWNHSF CEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA