Definition Azorhizobium caulinodans ORS 571, complete genome.
Accession NC_009937
Length 5,369,772

Click here to switch to the map view.

The map label for this gene is ydfG [C]

Identifier: 158423003

GI number: 158423003

Start: 1561327

End: 1562136

Strand: Direct

Name: ydfG [C]

Synonym: AZC_1379

Alternate gene names: 158423003

Gene position: 1561327-1562136 (Clockwise)

Preceding gene: 158423002

Following gene: 158423004

Centisome position: 29.08

GC content: 68.15

Gene sequence:

>810_bases
ATGAGCACCAAGGGAACTGCCGTCGTGACCGGCGCCTCCTCCGGCATCGGAGCCATCTATGCGGACCGCCTCGCCCGGCG
CGGCTATGATCTCGTGATCGTTGCCCGTAATGCAGAGCGGCTGGAAAAGCAGGCCGAGGCGCTGCGCGCCCGACACGGCG
TCGCCGTGCGCACCCTCAGCGCGGATCTCACGGACAAGTCGGGGCTGCGGCAGGTGGAAGACCTGCTGCGGAACGACACG
AGCGTCTCGCTGCTCGTCAACAATGCCGGCTTCGGTGGTGCGGGCGAACTGCTGCAATCGGACGTGGACCGCATGGAGGA
GATGGTGGACGTCAATGTCACCGCCGTCATGCGCCTCGCCTATGCGGCCGCGCCGGGCTTCGCGGCGCGCGGCGCGGGCG
CCATCATCAATATCGCGTCCATCGTGGCCATCGGTCCGGAAATCCTGAACGGCGTCTACGGGGGCACGAAGGCCTTCGTG
CTGGCCTTCAGCCAGTCCCTGCACAAGGAACTCTCGCCCAAGGGCGTTCAGGTGCAGGTGGTGCTGCCCGGCGCCACGGC
CACCGATTTCTGGGACACGGCCGGCGTGCCGGTGAGCCATCTGCCCACCGAATGGGTGATGACCGCGGAAAACCTCGTGG
ACGCGGCCCTTCTGGGCTTTGAGCGGGGTGAGTTCGCCAGCATTCCCTCGCTTCAGGACGGGGCCGAGTGGGAGGCCTAT
GAGACCGCGCGTCAGGCGATGCTGCCGCACCTCTCCAGTTCCGCCGTGGCGCCCCGTTACCGGGCGGGTGCCGACGCCGG
CGCGCTCTGA

Upstream 100 bases:

>100_bases
AAACGAAGGCCTCACCGCGTGCACACCTGAGCACGCGGCAGGGCCGGCTTGACCCATCGCACACCCGCCGGACCCCGGCG
GCCATTCAAAGGGACTGACC

Downstream 100 bases:

>100_bases
GGGAAACGGGAGGAGCCTGTCATGGATGCGCGCACCCGCCTTTTGCTGGAGGCTCCTCCCGGCCGCACCATCCTGCGTCT
GGCCTGGCCCAATGTCCTCG

Product: short-chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSTKGTAVVTGASSGIGAIYADRLARRGYDLVIVARNAERLEKQAEALRARHGVAVRTLSADLTDKSGLRQVEDLLRNDT
SVSLLVNNAGFGGAGELLQSDVDRMEEMVDVNVTAVMRLAYAAAPGFAARGAGAIINIASIVAIGPEILNGVYGGTKAFV
LAFSQSLHKELSPKGVQVQVVLPGATATDFWDTAGVPVSHLPTEWVMTAENLVDAALLGFERGEFASIPSLQDGAEWEAY
ETARQAMLPHLSSSAVAPRYRAGADAGAL

Sequences:

>Translated_269_residues
MSTKGTAVVTGASSGIGAIYADRLARRGYDLVIVARNAERLEKQAEALRARHGVAVRTLSADLTDKSGLRQVEDLLRNDT
SVSLLVNNAGFGGAGELLQSDVDRMEEMVDVNVTAVMRLAYAAAPGFAARGAGAIINIASIVAIGPEILNGVYGGTKAFV
LAFSQSLHKELSPKGVQVQVVLPGATATDFWDTAGVPVSHLPTEWVMTAENLVDAALLGFERGEFASIPSLQDGAEWEAY
ETARQAMLPHLSSSAVAPRYRAGADAGAL
>Mature_268_residues
STKGTAVVTGASSGIGAIYADRLARRGYDLVIVARNAERLEKQAEALRARHGVAVRTLSADLTDKSGLRQVEDLLRNDTS
VSLLVNNAGFGGAGELLQSDVDRMEEMVDVNVTAVMRLAYAAAPGFAARGAGAIINIASIVAIGPEILNGVYGGTKAFVL
AFSQSLHKELSPKGVQVQVVLPGATATDFWDTAGVPVSHLPTEWVMTAENLVDAALLGFERGEFASIPSLQDGAEWEAYE
TARQAMLPHLSSSAVAPRYRAGADAGAL

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7705855, Length=188, Percent_Identity=33.5106382978723, Blast_Score=110, Evalue=9e-25,
Organism=Homo sapiens, GI4557649, Length=186, Percent_Identity=33.8709677419355, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI226371731, Length=187, Percent_Identity=32.0855614973262, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI40254992, Length=195, Percent_Identity=31.2820512820513, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI33667109, Length=227, Percent_Identity=30.3964757709251, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI5031737, Length=186, Percent_Identity=32.7956989247312, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI40807363, Length=219, Percent_Identity=30.1369863013699, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI7657478, Length=188, Percent_Identity=29.2553191489362, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI20149619, Length=189, Percent_Identity=29.6296296296296, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI32483357, Length=185, Percent_Identity=25.4054054054054, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1787820, Length=179, Percent_Identity=30.7262569832402, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787335, Length=185, Percent_Identity=31.8918918918919, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082160, Length=194, Percent_Identity=31.4432989690722, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786701, Length=201, Percent_Identity=26.865671641791, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082100, Length=188, Percent_Identity=29.2553191489362, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789208, Length=187, Percent_Identity=30.4812834224599, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790717, Length=185, Percent_Identity=27.027027027027, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17559552, Length=189, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17557668, Length=189, Percent_Identity=32.8042328042328, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI25152911, Length=191, Percent_Identity=32.9842931937173, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI71994604, Length=194, Percent_Identity=32.4742268041237, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=200, Percent_Identity=33.5, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI212646214, Length=190, Percent_Identity=29.4736842105263, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17560176, Length=193, Percent_Identity=30.0518134715026, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=205, Percent_Identity=30.7317073170732, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=199, Percent_Identity=29.6482412060301, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=199, Percent_Identity=33.1658291457286, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=201, Percent_Identity=30.8457711442786, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=204, Percent_Identity=30.8823529411765, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=190, Percent_Identity=27.3684210526316, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=202, Percent_Identity=32.1782178217822, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=225, Percent_Identity=28, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=201, Percent_Identity=32.3383084577114, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=29.2929292929293, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=206, Percent_Identity=30.0970873786408, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=192, Percent_Identity=28.125, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=222, Percent_Identity=27.9279279279279, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=207, Percent_Identity=31.8840579710145, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=197, Percent_Identity=28.9340101522843, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=222, Percent_Identity=27.9279279279279, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=207, Percent_Identity=32.3671497584541, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=227, Percent_Identity=26.8722466960352, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI25147288, Length=184, Percent_Identity=30.4347826086957, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=202, Percent_Identity=28.7128712871287, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=208, Percent_Identity=29.8076923076923, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=200, Percent_Identity=31, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=31.0880829015544, Blast_Score=82, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6319635, Length=187, Percent_Identity=27.2727272727273, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6322067, Length=197, Percent_Identity=28.4263959390863, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24640442, Length=191, Percent_Identity=36.6492146596859, Blast_Score=110, Evalue=9e-25,
Organism=Drosophila melanogaster, GI28571526, Length=192, Percent_Identity=35.4166666666667, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI161076933, Length=185, Percent_Identity=34.0540540540541, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24584748, Length=185, Percent_Identity=34.0540540540541, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI23397609, Length=189, Percent_Identity=34.3915343915344, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24584752, Length=188, Percent_Identity=32.4468085106383, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI28574402, Length=188, Percent_Identity=31.9148936170213, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24584744, Length=188, Percent_Identity=31.9148936170213, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI21357041, Length=192, Percent_Identity=32.8125, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI116007236, Length=207, Percent_Identity=32.3671497584541, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007238, Length=187, Percent_Identity=32.620320855615, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24644339, Length=192, Percent_Identity=29.1666666666667, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24580925, Length=202, Percent_Identity=31.6831683168317, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI21355319, Length=186, Percent_Identity=28.494623655914, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24648944, Length=204, Percent_Identity=29.4117647058824, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24643142, Length=218, Percent_Identity=30.2752293577982, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24639444, Length=196, Percent_Identity=30.6122448979592, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24649181, Length=187, Percent_Identity=26.7379679144385, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24665247, Length=199, Percent_Identity=29.1457286432161, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI221331216, Length=199, Percent_Identity=29.1457286432161, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28193; Mature: 28062

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MSTKGTAVVTGASSGIGAIYADRLARRGYDLVIVARNAERLEKQAEALRARHGVAVRTLS
CCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEEEE
ADLTDKSGLRQVEDLLRNDTSVSLLVNNAGFGGAGELLQSDVDRMEEMVDVNVTAVMRLA
CCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
YAAAPGFAARGAGAIINIASIVAIGPEILNGVYGGTKAFVLAFSQSLHKELSPKGVQVQV
HHHCCCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEE
VLPGATATDFWDTAGVPVSHLPTEWVMTAENLVDAALLGFERGEFASIPSLQDGAEWEAY
EECCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
ETARQAMLPHLSSSAVAPRYRAGADAGAL
HHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
STKGTAVVTGASSGIGAIYADRLARRGYDLVIVARNAERLEKQAEALRARHGVAVRTLS
CCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEEEE
ADLTDKSGLRQVEDLLRNDTSVSLLVNNAGFGGAGELLQSDVDRMEEMVDVNVTAVMRLA
CCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
YAAAPGFAARGAGAIINIASIVAIGPEILNGVYGGTKAFVLAFSQSLHKELSPKGVQVQV
HHHCCCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEE
VLPGATATDFWDTAGVPVSHLPTEWVMTAENLVDAALLGFERGEFASIPSLQDGAEWEAY
EECCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
ETARQAMLPHLSSSAVAPRYRAGADAGAL
HHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12950922 [H]