| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is nreB [H]
Identifier: 158318941
GI number: 158318941
Start: 8820081
End: 8821865
Strand: Direct
Name: nreB [H]
Synonym: Franean1_7224
Alternate gene names: 158318941
Gene position: 8820081-8821865 (Clockwise)
Preceding gene: 158318938
Following gene: 158318942
Centisome position: 98.2
GC content: 72.44
Gene sequence:
>1785_bases GTGCCACATCCGTTCCTGCCGCGGCCCCTGACCCGAATGGCCGCCAGGCACCGTTCCGCCGCCCTGACCATCACGGGCAT CACGACGGTCGCGATCACCGTCGCGGCCCAGTGGCCGGCGTGGTCCACGACGCCGTTCGCCGCCGCGCTGAACGTCTTCG TCTCCCTCACCTTCGTCCTCACCGGGCTCCTGCTCCTGGACGAGGACGCCCTCGACAGCGTGAGCAGCGCGTTCGTCCTC GGCGGGGTGCTGTGGACGGCGTCCTGGGCGGCGACCTGGGAGGCCGGCCCGTCCGCTGTGCTCTCCTCGTTCGCCTACAC CCACTTCTGGGTCTGCCTCGGGTGGGGCGTGCTTCGATACCCGTCAGGACGTCTGCACGACAACAGCGAACGAGTGCTGC TCGGCACCGCCGTCGCGGTGATCCCGGTGGGCAACCTCGTGCTGATCGCACTGTCCCGCCCGGAGTCCTTCGGCTACGCC CCCGGCGTGTGGTGGTACGGCTCCGCGATCGACCCGGGCGTGTTCGACATCGTCGTGCACACCCTCGACGCACTGACCCT CGCGGTCGTCGTCGCCTTCGGCCTGGCCATCGCCCGGCGCTACCGGCGGGCCTCCGCGCTGGAGCGGCGCACCCTCGGGC CGGTCTCCCTCGGCGTGCTCGCCGCGTTCGCCATAGCCGCGGTGGTGAACCTGTTCGTCTACTACCCGCAGGGCGCCGAG ATCGATCCGATCTTCATCCCGATAGCACTGGCACTGTTCGCGATCCCGGTGGCATTCGCCGTGGCCGCCGTGCGCCGCCA TCTCGCCCGGGCCCGCATCGCCCAGCTGCTGAGCGGGCTGAGCACGCCGCCGACGCCGGCGGCCGTCCGCGAGGTGCTGC GGGCGGCGGTCGGCGACGACGGCGCGGAGCTCTACCTGTGGATGCCCGAACGCGGCTTCCACGTGGACGCCGACGGCCTG CCGGCCGTCCCGCCCACGGCGGGAGGCACCCAGCTCGCGCTGCCGGTCCGCACCACGGCCGGCGCGCCGCTGGCCGTGCT CTCCGCGCGCTCGTCGCTGGAACGCGACCGCGACCTGGTCGAGGTCGCGCTGAACGCCAGCGCCATCGCGCTGGAGAACG CGCGGCTGCACGCCACGGTGACCGCCCAGCTCGACGCCGTCCGCGCGACCCGGACCCGACTCGTCGAGGCCGGGCTCGCC GAACGCCGGCGGATCGAGCGCGACCTGCACGACGGCGCGCAGCAGCGGCTGCTGGCGCTCTCGGCCCGGCTCGGACTCGC CCGGGAGCAGTCCACCGACCAGGCCACCGTCGCCGCCCTCGAGGGAGCCCGGGAGGACCTGCGCGCGGCGCTCGCCGAGC TGCGCGGACTCGCCCGCGGCATCCATCCGCCCGTGCTGAGCGAGAGCGGGCTGAAAGCGGCACTCGAGAATGTCACCGAG GCCCTCCCCGTGGATGTCGACCTTGATGTGCCTGACGATCGATTCGATACCACGCTGGAGACCACGGCGTACTACACCGT GAGCGAGGCTCTGGCGAATACCGTCAAACACGCGGATGCCAGCCATGTGCGGGTAACGGTCAAAATGCTCGGCGGCCAGT TCCTCATCCAGGTGACCGACGACGGGAAGGGCGGTGCGACCATCAGCGGCGGCGGCGGAATCGCCGGCCTCGGCGACCGG GTCCGCGCACTCGGCGGCGAGTTCACGCTGTCGAGCCCGGAGCGCTGCGGCACCCGGTTGACGGCGAGCATCCCGTGGAG CAGCGACGCGCGAGGTGGGTGGTGA
Upstream 100 bases:
>100_bases GGTAGTTCCCACCTTGACGCCTGGGGGGTAACCCTCAGGCCGAAGGGCCTGGTGTGTAACCCTTGTCGAGTGAGATCGTC GCGATCGGTGGTGGCCTGAG
Downstream 100 bases:
>100_bases CATGCGGGTAGCGATAGCGGACGATTCAGCGCTGTTCCGGGAAGGCCTCGCGATGCTGCTCAACGCGGCAGGCGTGCAGG TCATCGCGCAGGCCGCCGAA
Product: integral membrane sensor signal transduction histidine kinase
Products: NA
Alternate protein names: Nitrogen regulation protein B [H]
Number of amino acids: Translated: 594; Mature: 593
Protein sequence:
>594_residues MPHPFLPRPLTRMAARHRSAALTITGITTVAITVAAQWPAWSTTPFAAALNVFVSLTFVLTGLLLLDEDALDSVSSAFVL GGVLWTASWAATWEAGPSAVLSSFAYTHFWVCLGWGVLRYPSGRLHDNSERVLLGTAVAVIPVGNLVLIALSRPESFGYA PGVWWYGSAIDPGVFDIVVHTLDALTLAVVVAFGLAIARRYRRASALERRTLGPVSLGVLAAFAIAAVVNLFVYYPQGAE IDPIFIPIALALFAIPVAFAVAAVRRHLARARIAQLLSGLSTPPTPAAVREVLRAAVGDDGAELYLWMPERGFHVDADGL PAVPPTAGGTQLALPVRTTAGAPLAVLSARSSLERDRDLVEVALNASAIALENARLHATVTAQLDAVRATRTRLVEAGLA ERRRIERDLHDGAQQRLLALSARLGLAREQSTDQATVAALEGAREDLRAALAELRGLARGIHPPVLSESGLKAALENVTE ALPVDVDLDVPDDRFDTTLETTAYYTVSEALANTVKHADASHVRVTVKMLGGQFLIQVTDDGKGGATISGGGGIAGLGDR VRALGGEFTLSSPERCGTRLTASIPWSSDARGGW
Sequences:
>Translated_594_residues MPHPFLPRPLTRMAARHRSAALTITGITTVAITVAAQWPAWSTTPFAAALNVFVSLTFVLTGLLLLDEDALDSVSSAFVL GGVLWTASWAATWEAGPSAVLSSFAYTHFWVCLGWGVLRYPSGRLHDNSERVLLGTAVAVIPVGNLVLIALSRPESFGYA PGVWWYGSAIDPGVFDIVVHTLDALTLAVVVAFGLAIARRYRRASALERRTLGPVSLGVLAAFAIAAVVNLFVYYPQGAE IDPIFIPIALALFAIPVAFAVAAVRRHLARARIAQLLSGLSTPPTPAAVREVLRAAVGDDGAELYLWMPERGFHVDADGL PAVPPTAGGTQLALPVRTTAGAPLAVLSARSSLERDRDLVEVALNASAIALENARLHATVTAQLDAVRATRTRLVEAGLA ERRRIERDLHDGAQQRLLALSARLGLAREQSTDQATVAALEGAREDLRAALAELRGLARGIHPPVLSESGLKAALENVTE ALPVDVDLDVPDDRFDTTLETTAYYTVSEALANTVKHADASHVRVTVKMLGGQFLIQVTDDGKGGATISGGGGIAGLGDR VRALGGEFTLSSPERCGTRLTASIPWSSDARGGW >Mature_593_residues PHPFLPRPLTRMAARHRSAALTITGITTVAITVAAQWPAWSTTPFAAALNVFVSLTFVLTGLLLLDEDALDSVSSAFVLG GVLWTASWAATWEAGPSAVLSSFAYTHFWVCLGWGVLRYPSGRLHDNSERVLLGTAVAVIPVGNLVLIALSRPESFGYAP GVWWYGSAIDPGVFDIVVHTLDALTLAVVVAFGLAIARRYRRASALERRTLGPVSLGVLAAFAIAAVVNLFVYYPQGAEI DPIFIPIALALFAIPVAFAVAAVRRHLARARIAQLLSGLSTPPTPAAVREVLRAAVGDDGAELYLWMPERGFHVDADGLP AVPPTAGGTQLALPVRTTAGAPLAVLSARSSLERDRDLVEVALNASAIALENARLHATVTAQLDAVRATRTRLVEAGLAE RRRIERDLHDGAQQRLLALSARLGLAREQSTDQATVAALEGAREDLRAALAELRGLARGIHPPVLSESGLKAALENVTEA LPVDVDLDVPDDRFDTTLETTAYYTVSEALANTVKHADASHVRVTVKMLGGQFLIQVTDDGKGGATISGGGGIAGLGDRV RALGGEFTLSSPERCGTRLTASIPWSSDARGGW
Specific function: Member of the two-component regulatory system nreB/nreC involved in the control of dissimilatory nitrate/nitrite reduction in response to oxygen. NreB functions as a direct oxygen sensor histidine kinase which is autophosphorylated, in the absence of oxyg
COG id: COG4564
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI87082311, Length=220, Percent_Identity=26.3636363636364, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1787474, Length=228, Percent_Identity=28.9473684210526, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR011712 - InterPro: IPR005467 - InterPro: IPR017203 [H]
Pfam domain/function: PF02518 HATPase_c; PF07730 HisKA_3 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 62819; Mature: 62687
Theoretical pI: Translated: 6.66; Mature: 6.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHPFLPRPLTRMAARHRSAALTITGITTVAITVAAQWPAWSTTPFAAALNVFVSLTFVL CCCCCCCCHHHHHHHHHCCCEEEEEEHEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH TGLLLLDEDALDSVSSAFVLGGVLWTASWAATWEAGPSAVLSSFAYTHFWVCLGWGVLRY HHHHHCCCHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHCHHHCC PSGRLHDNSERVLLGTAVAVIPVGNLVLIALSRPESFGYAPGVWWYGSAIDPGVFDIVVH CCCCCCCCCCEEEEEEHEEEEECCCEEEEEEECCCCCCCCCCCEEECCCCCCHHHHHHHH TLDALTLAVVVAFGLAIARRYRRASALERRTLGPVSLGVLAAFAIAAVVNLFVYYPQGAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEECCCCCC IDPIFIPIALALFAIPVAFAVAAVRRHLARARIAQLLSGLSTPPTPAAVREVLRAAVGDD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC GAELYLWMPERGFHVDADGLPAVPPTAGGTQLALPVRTTAGAPLAVLSARSSLERDRDLV CCEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH EVALNASAIALENARLHATVTAQLDAVRATRTRLVEAGLAERRRIERDLHDGAQQRLLAL HHHHCCCEEEEECCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SARLGLAREQSTDQATVAALEGAREDLRAALAELRGLARGIHPPVLSESGLKAALENVTE HHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH ALPVDVDLDVPDDRFDTTLETTAYYTVSEALANTVKHADASHVRVTVKMLGGQFLIQVTD HCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEEEEC DGKGGATISGGGGIAGLGDRVRALGGEFTLSSPERCGTRLTASIPWSSDARGGW CCCCCEEECCCCCCCCCHHHHHHCCCCCCCCCHHHCCCEEEEECCCCCCCCCCC >Mature Secondary Structure PHPFLPRPLTRMAARHRSAALTITGITTVAITVAAQWPAWSTTPFAAALNVFVSLTFVL CCCCCCCHHHHHHHHHCCCEEEEEEHEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH TGLLLLDEDALDSVSSAFVLGGVLWTASWAATWEAGPSAVLSSFAYTHFWVCLGWGVLRY HHHHHCCCHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHCHHHCC PSGRLHDNSERVLLGTAVAVIPVGNLVLIALSRPESFGYAPGVWWYGSAIDPGVFDIVVH CCCCCCCCCCEEEEEEHEEEEECCCEEEEEEECCCCCCCCCCCEEECCCCCCHHHHHHHH TLDALTLAVVVAFGLAIARRYRRASALERRTLGPVSLGVLAAFAIAAVVNLFVYYPQGAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEECCCCCC IDPIFIPIALALFAIPVAFAVAAVRRHLARARIAQLLSGLSTPPTPAAVREVLRAAVGDD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC GAELYLWMPERGFHVDADGLPAVPPTAGGTQLALPVRTTAGAPLAVLSARSSLERDRDLV CCEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH EVALNASAIALENARLHATVTAQLDAVRATRTRLVEAGLAERRRIERDLHDGAQQRLLAL HHHHCCCEEEEECCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SARLGLAREQSTDQATVAALEGAREDLRAALAELRGLARGIHPPVLSESGLKAALENVTE HHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH ALPVDVDLDVPDDRFDTTLETTAYYTVSEALANTVKHADASHVRVTVKMLGGQFLIQVTD HCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEEEEC DGKGGATISGGGGIAGLGDRVRALGGEFTLSSPERCGTRLTASIPWSSDARGGW CCCCCEEECCCCCCCCCHHHHHHCCCCCCCCCHHHCCCEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA