| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158315952
Identifier: 158315952
GI number: 158315952
Start: 4955996
End: 4958359
Strand: Reverse
Name: 158315952
Synonym: Franean1_4170
Alternate gene names: NA
Gene position: 4958359-4955996 (Counterclockwise)
Preceding gene: 158315953
Following gene: 158315951
Centisome position: 55.2
GC content: 73.48
Gene sequence:
>2364_bases GTGGGGCTGCGCGAGCGGCTCGCGGGCAGGCGTGTGTTCGTGACCGGGGTGACCGGGTTCGTCGGTGAGGCGCTGTTGGA GCGGCTGCTCTCGGAGTTCCCGGACACCCAGGTCGTGGCGCTCGTGCGGCCCCGGGGCAGCCATTCGGGGATGGCCCGGT TGGAGCGGATGACCCGTAAGCCGGCGTTCGCCGGGCTGCGGGAACGGTTGGGCCGTGAGGGGCTGGCGGCGCGGCTGGCG GCGCAGGTGCGGGTCATCGAGGGTGACCTGGCCAGTATGGGTGAGTTGCCCGCCGACCTGGACGTGGTGATCCACTGCGC CGGGGAGGTGTCGTTCGACCCGGCGATCGACGAGGGGTTCGCGACGAACCTGGGCGGGGTGCAGGAGCTGCTGCGCGCGG TGCGCGCTGCCGGGGCCCGCCCGCATCTGGTGCACGTGTCGACCGCCTATGTCGCCGGGTTGCGTTCGGGGCACATCGCC GAGGGCCGGCTGGCCCACGAGGTGGACTGGGCGGCGGAGCAGGCGTCGGCCGCGCGGGCCCGCCACGCCGCGGAGGACGC GTCGCGCTCGCCGGAGAACTCGGCGCGGTTCCGCGAGCAGGCGTCGGCCGAGCATGTGCGGGCCGGCGCGCAGACGGTGT CGGCGCAGGCGGAGGCGGCGCGGCGGGCGTGGGTGGCGGCGCGGTTGGTCGCCGCGGGCTCCGAACGCGCGCAGGTGCTG GGCTGGACGGACGCGTACACGTTCACCAAGGCGTTGGGTGAGCGGTATCTGGAGGACTCCCACGGCGATCTGCCGTTGAC GATCGTCCGCCCGTCGATCATCGAGAGCGCGCTGGCGAAGCCGTTCCCGGGGTGGATCGAGGGGTTCAAGATGGCCGAGC CGCTGATCCTGGCGTTCGGCCGCGGGGAGCTGCCGGACTTCCCTGCGTCCCCGGATGCCGTCGTCGACATCATCCCGGTG GATCTGGTCGTCAACGCGCTGCTGGCGGCGGCGGCGAGCCCCCCGCCGCCGGAGCGCCCGGCCTATTACACGGTGTGTTC GGGGTTCCGGAACCCGCTGCTGTTCCGTGACCTCTACGACTATGTGCGGGGCTATTTCCTGGCCGATCCGCTGCCGCGGC GCGGCCGCGGGCATATCGGGGTTCCTGAGTGGCCGTTCGCCGGGGCGGTGGCGGTGGAGGCGAAGCTGCGCCGCGGGGAG AAGGCGGTGGAGTGGGCGAACCGGGTGTTGGCGCACGCGCCGCGTTCGGAGCGGGTTCGCCGGCTGGCCGTCGACTTGGA ACGTACCGAGGGGCGGGTGGCGTTCCTACGCCGCTACTCCGATGTGTACCGGGCGTACACGAAGGCCGAGCTGGTCTACG TCGACGACGCCACCGCGGCGCTGCACGCGGCGATGGACCCGGCCGACCAGGTCGACTTCGGGTTCGACCCGGCGTGTTTC GACTGGCGGCACTACCTGCAGGACGTGCACTGCCCGGCGGTGACGCAGGTGCTGCGCCGGCCGCGCGACGCCGCCCCGGC GCGGCGGATGGCCCGCAACCTCACCGCCGGCGAGGGGGTGCTGGCCGTGTTCGACCTGGACGGGACGCTGGTGTCCTCGA CGGTGGTCGAGTCGTATCTGTGGCTGCGGCTGGCCGACGGCGACGTCGGGGAACGGGCCCGGGAGCTGGTGTCGCTGGCG CGGGCACTGCCGGGGTATCTGCGTGCCGAGCGCCGCGACCGGGGGCATCTGATTCGCTCGGTGTACGGCCGGTACGCCGG CGCCGACCCGGTGGAGCTGGCCCGGGTCGTCGACGAGGTCGCGGCGGATGTGGTGTTGCGGCGGGTGAAACCGGCGGCGG TGCGCCGTGTGCGGGAGCATCGCGCGGCCGGGCATCGCACCGTGCTGTTGACCGGGGCGGTCGATGTGCTGACCCGTCCG CTGGCGCCGTTGTTCGACGAGATCGTCGCGACCGGCCTGGAAGTCGGCGCGGATGGCCGGTACACGGGACGGTTGTTGTC GTCGCCGCTGGTCGGGGATGCTCGGGCGGCGTTCGTGGATCATTACGCGCGGCGCCGGGGGGCGGACCTGTCCGCGTCGT GGGCGTACGCGGACAGCCTGTCGGATCTGCCGATGCTGCGCACGGTGGGCAATCCGGTGGCGGTGAACCCGGATGTGGCG TTGCACAAGGTGGCGCGGGGGGCGGGCTGGCCGATCGAGGAGTGGCCGTCGACGCCGGGTGAGCCGCGGCTGATGGTCGC CAGCCGCGCTGAGCGGGGCCTGTTCGCCGCGGCGGCCCGCGCCCGGGTTGCCGCGGGCGGCCTGTCAGGGTCGGGGTCGG GTGGGAGTGGTGTTGTGCGGGTGGAAGTGGGTGAGGGCCGGTGA
Upstream 100 bases:
>100_bases CCGACGGGTTCGTTCGTGGACGGTCCGGTGTCGCCTACTGTTGCGCACCGGGCGTCCGTCGGGGACGCCGGTGGGGCTGC GGCGAGTGCGGAGGTGACCG
Downstream 100 bases:
>100_bases CACGCGGTCTGGAGCTGTACCGGTCGCTGCCGCGGTACGCGGCGGCGCGGGTGGTGTCGGGCCGGTTCCCGCGGCTGTCG GGGGCGGCGGCGACGACCGC
Product: HAD family hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 787; Mature: 786
Protein sequence:
>787_residues MGLRERLAGRRVFVTGVTGFVGEALLERLLSEFPDTQVVALVRPRGSHSGMARLERMTRKPAFAGLRERLGREGLAARLA AQVRVIEGDLASMGELPADLDVVIHCAGEVSFDPAIDEGFATNLGGVQELLRAVRAAGARPHLVHVSTAYVAGLRSGHIA EGRLAHEVDWAAEQASAARARHAAEDASRSPENSARFREQASAEHVRAGAQTVSAQAEAARRAWVAARLVAAGSERAQVL GWTDAYTFTKALGERYLEDSHGDLPLTIVRPSIIESALAKPFPGWIEGFKMAEPLILAFGRGELPDFPASPDAVVDIIPV DLVVNALLAAAASPPPPERPAYYTVCSGFRNPLLFRDLYDYVRGYFLADPLPRRGRGHIGVPEWPFAGAVAVEAKLRRGE KAVEWANRVLAHAPRSERVRRLAVDLERTEGRVAFLRRYSDVYRAYTKAELVYVDDATAALHAAMDPADQVDFGFDPACF DWRHYLQDVHCPAVTQVLRRPRDAAPARRMARNLTAGEGVLAVFDLDGTLVSSTVVESYLWLRLADGDVGERARELVSLA RALPGYLRAERRDRGHLIRSVYGRYAGADPVELARVVDEVAADVVLRRVKPAAVRRVREHRAAGHRTVLLTGAVDVLTRP LAPLFDEIVATGLEVGADGRYTGRLLSSPLVGDARAAFVDHYARRRGADLSASWAYADSLSDLPMLRTVGNPVAVNPDVA LHKVARGAGWPIEEWPSTPGEPRLMVASRAERGLFAAAARARVAAGGLSGSGSGGSGVVRVEVGEGR
Sequences:
>Translated_787_residues MGLRERLAGRRVFVTGVTGFVGEALLERLLSEFPDTQVVALVRPRGSHSGMARLERMTRKPAFAGLRERLGREGLAARLA AQVRVIEGDLASMGELPADLDVVIHCAGEVSFDPAIDEGFATNLGGVQELLRAVRAAGARPHLVHVSTAYVAGLRSGHIA EGRLAHEVDWAAEQASAARARHAAEDASRSPENSARFREQASAEHVRAGAQTVSAQAEAARRAWVAARLVAAGSERAQVL GWTDAYTFTKALGERYLEDSHGDLPLTIVRPSIIESALAKPFPGWIEGFKMAEPLILAFGRGELPDFPASPDAVVDIIPV DLVVNALLAAAASPPPPERPAYYTVCSGFRNPLLFRDLYDYVRGYFLADPLPRRGRGHIGVPEWPFAGAVAVEAKLRRGE KAVEWANRVLAHAPRSERVRRLAVDLERTEGRVAFLRRYSDVYRAYTKAELVYVDDATAALHAAMDPADQVDFGFDPACF DWRHYLQDVHCPAVTQVLRRPRDAAPARRMARNLTAGEGVLAVFDLDGTLVSSTVVESYLWLRLADGDVGERARELVSLA RALPGYLRAERRDRGHLIRSVYGRYAGADPVELARVVDEVAADVVLRRVKPAAVRRVREHRAAGHRTVLLTGAVDVLTRP LAPLFDEIVATGLEVGADGRYTGRLLSSPLVGDARAAFVDHYARRRGADLSASWAYADSLSDLPMLRTVGNPVAVNPDVA LHKVARGAGWPIEEWPSTPGEPRLMVASRAERGLFAAAARARVAAGGLSGSGSGGSGVVRVEVGEGR >Mature_786_residues GLRERLAGRRVFVTGVTGFVGEALLERLLSEFPDTQVVALVRPRGSHSGMARLERMTRKPAFAGLRERLGREGLAARLAA QVRVIEGDLASMGELPADLDVVIHCAGEVSFDPAIDEGFATNLGGVQELLRAVRAAGARPHLVHVSTAYVAGLRSGHIAE GRLAHEVDWAAEQASAARARHAAEDASRSPENSARFREQASAEHVRAGAQTVSAQAEAARRAWVAARLVAAGSERAQVLG WTDAYTFTKALGERYLEDSHGDLPLTIVRPSIIESALAKPFPGWIEGFKMAEPLILAFGRGELPDFPASPDAVVDIIPVD LVVNALLAAAASPPPPERPAYYTVCSGFRNPLLFRDLYDYVRGYFLADPLPRRGRGHIGVPEWPFAGAVAVEAKLRRGEK AVEWANRVLAHAPRSERVRRLAVDLERTEGRVAFLRRYSDVYRAYTKAELVYVDDATAALHAAMDPADQVDFGFDPACFD WRHYLQDVHCPAVTQVLRRPRDAAPARRMARNLTAGEGVLAVFDLDGTLVSSTVVESYLWLRLADGDVGERARELVSLAR ALPGYLRAERRDRGHLIRSVYGRYAGADPVELARVVDEVAADVVLRRVKPAAVRRVREHRAAGHRTVLLTGAVDVLTRPL APLFDEIVATGLEVGADGRYTGRLLSSPLVGDARAAFVDHYARRRGADLSASWAYADSLSDLPMLRTVGNPVAVNPDVAL HKVARGAGWPIEEWPSTPGEPRLMVASRAERGLFAAAARARVAAGGLSGSGSGGSGVVRVEVGEGR
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serB family [H]
Homologues:
Organism=Homo sapiens, GI31542658, Length=504, Percent_Identity=23.8095238095238, Blast_Score=144, Evalue=2e-34, Organism=Homo sapiens, GI24308324, Length=340, Percent_Identity=25, Blast_Score=94, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17570463, Length=511, Percent_Identity=24.4618395303327, Blast_Score=125, Evalue=8e-29, Organism=Drosophila melanogaster, GI28572029, Length=492, Percent_Identity=23.5772357723577, Blast_Score=130, Evalue=3e-30, Organism=Drosophila melanogaster, GI28573762, Length=383, Percent_Identity=25.5874673629243, Blast_Score=114, Evalue=3e-25, Organism=Drosophila melanogaster, GI28572084, Length=333, Percent_Identity=25.8258258258258, Blast_Score=113, Evalue=4e-25, Organism=Drosophila melanogaster, GI24649464, Length=333, Percent_Identity=25.8258258258258, Blast_Score=113, Evalue=4e-25, Organism=Drosophila melanogaster, GI24647494, Length=331, Percent_Identity=26.8882175226586, Blast_Score=103, Evalue=3e-22, Organism=Drosophila melanogaster, GI281363511, Length=253, Percent_Identity=25.296442687747, Blast_Score=95, Evalue=2e-19, Organism=Drosophila melanogaster, GI281363509, Length=253, Percent_Identity=25.296442687747, Blast_Score=95, Evalue=2e-19, Organism=Drosophila melanogaster, GI24654209, Length=253, Percent_Identity=25.296442687747, Blast_Score=95, Evalue=2e-19, Organism=Drosophila melanogaster, GI24648302, Length=118, Percent_Identity=32.2033898305085, Blast_Score=80, Evalue=4e-15, Organism=Drosophila melanogaster, GI24640000, Length=159, Percent_Identity=32.7044025157233, Blast_Score=73, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR006385 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85097; Mature: 84965
Theoretical pI: Translated: 8.75; Mature: 8.75
Prosite motif: PS01228 COF_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLRERLAGRRVFVTGVTGFVGEALLERLLSEFPDTQVVALVRPRGSHSGMARLERMTRK CCCHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCC PAFAGLRERLGREGLAARLAAQVRVIEGDLASMGELPADLDVVIHCAGEVSFDPAIDEGF HHHHHHHHHHCHHHHHHHHHHHHHEECCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCC ATNLGGVQELLRAVRAAGARPHLVHVSTAYVAGLRSGHIAEGRLAHEVDWAAEQASAARA CCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH RHAAEDASRSPENSARFREQASAEHVRAGAQTVSAQAEAARRAWVAARLVAAGSERAQVL HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE GWTDAYTFTKALGERYLEDSHGDLPLTIVRPSIIESALAKPFPGWIEGFKMAEPLILAFG ECCHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHCCCCCHHHHHHHHCCCCEEEEC RGELPDFPASPDAVVDIIPVDLVVNALLAAAASPPPPERPAYYTVCSGFRNPLLFRDLYD CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHHH YVRGYFLADPLPRRGRGHIGVPEWPFAGAVAVEAKLRRGEKAVEWANRVLAHAPRSERVR HHHHEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHH RLAVDLERTEGRVAFLRRYSDVYRAYTKAELVYVDDATAALHAAMDPADQVDFGFDPACF HHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHCCCHHHCCCCCCCHHH DWRHYLQDVHCPAVTQVLRRPRDAAPARRMARNLTAGEGVLAVFDLDGTLVSSTVVESYL HHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHH WLRLADGDVGERARELVSLARALPGYLRAERRDRGHLIRSVYGRYAGADPVELARVVDEV EEEECCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH AADVVLRRVKPAAVRRVREHRAAGHRTVLLTGAVDVLTRPLAPLFDEIVATGLEVGADGR HHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECHHHHHHCCHHHHHHHHHHHCHHCCCCCC YTGRLLSSPLVGDARAAFVDHYARRRGADLSASWAYADSLSDLPMLRTVGNPVAVNPDVA CHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCEEECCCHH LHKVARGAGWPIEEWPSTPGEPRLMVASRAERGLFAAAARARVAAGGLSGSGSGGSGVVR HHHHHHCCCCCHHHCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHCCCCCCCCCCCCEEE VEVGEGR EEECCCC >Mature Secondary Structure GLRERLAGRRVFVTGVTGFVGEALLERLLSEFPDTQVVALVRPRGSHSGMARLERMTRK CCHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCC PAFAGLRERLGREGLAARLAAQVRVIEGDLASMGELPADLDVVIHCAGEVSFDPAIDEGF HHHHHHHHHHCHHHHHHHHHHHHHEECCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCC ATNLGGVQELLRAVRAAGARPHLVHVSTAYVAGLRSGHIAEGRLAHEVDWAAEQASAARA CCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH RHAAEDASRSPENSARFREQASAEHVRAGAQTVSAQAEAARRAWVAARLVAAGSERAQVL HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE GWTDAYTFTKALGERYLEDSHGDLPLTIVRPSIIESALAKPFPGWIEGFKMAEPLILAFG ECCHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHCCCCCHHHHHHHHCCCCEEEEC RGELPDFPASPDAVVDIIPVDLVVNALLAAAASPPPPERPAYYTVCSGFRNPLLFRDLYD CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHHH YVRGYFLADPLPRRGRGHIGVPEWPFAGAVAVEAKLRRGEKAVEWANRVLAHAPRSERVR HHHHEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHH RLAVDLERTEGRVAFLRRYSDVYRAYTKAELVYVDDATAALHAAMDPADQVDFGFDPACF HHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHCCCHHHCCCCCCCHHH DWRHYLQDVHCPAVTQVLRRPRDAAPARRMARNLTAGEGVLAVFDLDGTLVSSTVVESYL HHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHH WLRLADGDVGERARELVSLARALPGYLRAERRDRGHLIRSVYGRYAGADPVELARVVDEV EEEECCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH AADVVLRRVKPAAVRRVREHRAAGHRTVLLTGAVDVLTRPLAPLFDEIVATGLEVGADGR HHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECHHHHHHCCHHHHHHHHHHHCHHCCCCCC YTGRLLSSPLVGDARAAFVDHYARRRGADLSASWAYADSLSDLPMLRTVGNPVAVNPDVA CHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCEEECCCHH LHKVARGAGWPIEEWPSTPGEPRLMVASRAERGLFAAAARARVAAGGLSGSGSGGSGVVR HHHHHHCCCCCHHHCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHCCCCCCCCCCCCEEE VEVGEGR EEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA