| Definition | Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence. |
|---|---|
| Accession | NC_009784 |
| Length | 2,204,018 |
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The map label for this gene is 156978247
Identifier: 156978247
GI number: 156978247
Start: 2129069
End: 2130769
Strand: Direct
Name: 156978247
Synonym: VIBHAR_07053
Alternate gene names: NA
Gene position: 2129069-2130769 (Clockwise)
Preceding gene: 156978246
Following gene: 156978249
Centisome position: 96.6
GC content: 45.97
Gene sequence:
>1701_bases ATGGGTAGCAATGGATTGCTTATGTGGAAAATATGCCTTGAGTGGTCAGAAGACAGAACGAGGATTTTTGCCCGCCTACC AGAAGATGTTGAACTGGAAAGTGAGCTAAATCGAAAGGAATTGCCAGAGCAGCTTCAAACGATGGAGGCGAGTCAGGCAT TTGTTGATGAAGCTGAAGTGGTTCGATTTATTAACTGTGCTCGTGAGCGTAAAGCAGAAGCATACGAAGGCATCGTCGTC GCGCAGATTAAGAATGCTCAGGTAGACGTTGAACTGTTGAACAACGACATGCTTGCTAGTATGAACATCACTGGCGCTTA TGGTGGCCGCGGTTTGCGTGGTCCTGAAATCGTTCAAGCGCTTGTTCATGCGCAAGTGTTGAAAGGCATCAACAAATTGG CGCTCAAAAAAGTCATGGTCGTCAGTAATCAACTTAAACCCGGAGAAACCTTCACTCAACCCGTCGCTGTTGGTAAACAA CCAACTAAAGGTAAAGACGCTATCTTTACGCCTCTCGTCAAAGACATCACCAAACGTATCCTCAAGCCGAAAGAAGGCCA AACCACTTGTGATAAGATTGATTTACGTAACTTAGGTGAAACCATCGCCGTTGATATTGGCGACGAGGTCATGCGTCGAA CGCCTGCTACCAAGGGTATTCCAGGCTTTACTGTACAAGGTCGCGTGATTCCTCCTCAAGCAGGCAAAGACAGCCCTATC AAACCGGGTAAAGGAACCGAAATCAGCAAATCCGATCCTAACCTTCTTATCGCTTCTGTGTCTGGTACGCCTCTCATCAA AGACAAAACCATTGAAGTTGATAATGCGCTGTGTCTGAACAGTGTGGGCGTAAATACCGGACACGTTAAGTTTAAAGGCA ACGTCATCATTGGCGGCAATATTGAATCTGGCATGATCGTTAAAGCGACCGGCTCTATTACCGTTGGTGGCTTTATTGAA TCCGCGGACGTGCAAGCGGAAGGCGACATCCAAGTCGCGAAAGGCATTATTGGCCACACAGTGAGTGATGGTCAGCCGAA GAGTTGTCACGTTCGAACTAAAACATCGATTCGTGCCAGTTACGCTCAGTATTGTGAATTGCAGTCTGGGGAAGACATAG AGCTGGCTGTGCACAGTATGAATAACGACATTGTGTGTGGACGCAACCTGACGGTACTTGATGCCAGCGGTAAAAACGGC ACTTTAAGCGGTGGTGATGCCAAAGTAGGAAGTAAGGTACTTTGTTCTCAGCTTGGTGTAGAAGGTGATACAGCAACGAA AGTCGAAGCTTTTGCCTGTTACGCTGTATTCAAAGAGCGTATTGCCAACTTAAAAGAAGAATACAAGTCCGCCCAAGAAG GCACGATGGATGTGATTCGTAAGGAGCTTGAATTTAAGAAGCGACCTAAAGCAGAGCGTACTGATGAAGAACAAGTTCAA ATCGAAGTATTAAAAGCACAAAACAATGAGCGTCTTGATCAGGTTAAACAGAAGCTAGAACACACAGAGCACGACTTTGA GGTCTCATTGGAAGAGAATATTGTCGAAGCCAAAGATCGCGTGTTTACCCGTGTTACGGTGCAATTTGGAGACGAACAGG TGACAACCAAATGCATCCATGGCGGTTGTGTGTTTAGCTTTAACCAATACGAAATCAAAGTGGCGGCAAATTTAGAGGAA GAAGACTTCGTCGCGATTTAA
Upstream 100 bases:
>100_bases CAAGCTCAGAAATTGCCGGGCATCCTTTAGTGATGTGAGCCTAATTCTGAGAATTGAGAGGTTTGTTCAGAAAATAATTT TGGTTAGACTGAGATAAGTG
Downstream 100 bases:
>100_bases CTCTTTAATTGGAAGATTGAAAAAAGCCCGTGTATTGAGAGGTACACGGGCTTTTGTTTTTAAACGTTAGGCAATGTGTT CTTGGTAGTAAGCACCAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: Cytoplasmic Protein; Two-Component Fusion Protein; Serine/Threonine Protein Kinase
Number of amino acids: Translated: 566; Mature: 565
Protein sequence:
>566_residues MGSNGLLMWKICLEWSEDRTRIFARLPEDVELESELNRKELPEQLQTMEASQAFVDEAEVVRFINCARERKAEAYEGIVV AQIKNAQVDVELLNNDMLASMNITGAYGGRGLRGPEIVQALVHAQVLKGINKLALKKVMVVSNQLKPGETFTQPVAVGKQ PTKGKDAIFTPLVKDITKRILKPKEGQTTCDKIDLRNLGETIAVDIGDEVMRRTPATKGIPGFTVQGRVIPPQAGKDSPI KPGKGTEISKSDPNLLIASVSGTPLIKDKTIEVDNALCLNSVGVNTGHVKFKGNVIIGGNIESGMIVKATGSITVGGFIE SADVQAEGDIQVAKGIIGHTVSDGQPKSCHVRTKTSIRASYAQYCELQSGEDIELAVHSMNNDIVCGRNLTVLDASGKNG TLSGGDAKVGSKVLCSQLGVEGDTATKVEAFACYAVFKERIANLKEEYKSAQEGTMDVIRKELEFKKRPKAERTDEEQVQ IEVLKAQNNERLDQVKQKLEHTEHDFEVSLEENIVEAKDRVFTRVTVQFGDEQVTTKCIHGGCVFSFNQYEIKVAANLEE EDFVAI
Sequences:
>Translated_566_residues MGSNGLLMWKICLEWSEDRTRIFARLPEDVELESELNRKELPEQLQTMEASQAFVDEAEVVRFINCARERKAEAYEGIVV AQIKNAQVDVELLNNDMLASMNITGAYGGRGLRGPEIVQALVHAQVLKGINKLALKKVMVVSNQLKPGETFTQPVAVGKQ PTKGKDAIFTPLVKDITKRILKPKEGQTTCDKIDLRNLGETIAVDIGDEVMRRTPATKGIPGFTVQGRVIPPQAGKDSPI KPGKGTEISKSDPNLLIASVSGTPLIKDKTIEVDNALCLNSVGVNTGHVKFKGNVIIGGNIESGMIVKATGSITVGGFIE SADVQAEGDIQVAKGIIGHTVSDGQPKSCHVRTKTSIRASYAQYCELQSGEDIELAVHSMNNDIVCGRNLTVLDASGKNG TLSGGDAKVGSKVLCSQLGVEGDTATKVEAFACYAVFKERIANLKEEYKSAQEGTMDVIRKELEFKKRPKAERTDEEQVQ IEVLKAQNNERLDQVKQKLEHTEHDFEVSLEENIVEAKDRVFTRVTVQFGDEQVTTKCIHGGCVFSFNQYEIKVAANLEE EDFVAI >Mature_565_residues GSNGLLMWKICLEWSEDRTRIFARLPEDVELESELNRKELPEQLQTMEASQAFVDEAEVVRFINCARERKAEAYEGIVVA QIKNAQVDVELLNNDMLASMNITGAYGGRGLRGPEIVQALVHAQVLKGINKLALKKVMVVSNQLKPGETFTQPVAVGKQP TKGKDAIFTPLVKDITKRILKPKEGQTTCDKIDLRNLGETIAVDIGDEVMRRTPATKGIPGFTVQGRVIPPQAGKDSPIK PGKGTEISKSDPNLLIASVSGTPLIKDKTIEVDNALCLNSVGVNTGHVKFKGNVIIGGNIESGMIVKATGSITVGGFIES ADVQAEGDIQVAKGIIGHTVSDGQPKSCHVRTKTSIRASYAQYCELQSGEDIELAVHSMNNDIVCGRNLTVLDASGKNGT LSGGDAKVGSKVLCSQLGVEGDTATKVEAFACYAVFKERIANLKEEYKSAQEGTMDVIRKELEFKKRPKAERTDEEQVQI EVLKAQNNERLDQVKQKLEHTEHDFEVSLEENIVEAKDRVFTRVTVQFGDEQVTTKCIHGGCVFSFNQYEIKVAANLEEE DFVAI
Specific function: Unknown
COG id: COG1315
COG function: function code L; Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61826; Mature: 61695
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSNGLLMWKICLEWSEDRTRIFARLPEDVELESELNRKELPEQLQTMEASQAFVDEAEV CCCCCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHH VRFINCARERKAEAYEGIVVAQIKNAQVDVELLNNDMLASMNITGAYGGRGLRGPEIVQA HHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHH LVHAQVLKGINKLALKKVMVVSNQLKPGETFTQPVAVGKQPTKGKDAIFTPLVKDITKRI HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHH LKPKEGQTTCDKIDLRNLGETIAVDIGDEVMRRTPATKGIPGFTVQGRVIPPQAGKDSPI CCCCCCCCCHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCEEEECEEECCCCCCCCCC KPGKGTEISKSDPNLLIASVSGTPLIKDKTIEVDNALCLNSVGVNTGHVKFKGNVIIGGN CCCCCCCCCCCCCCEEEEECCCCCEECCCEEECCCCEEECCCCCCCCEEEEECCEEECCC IESGMIVKATGSITVGGFIESADVQAEGDIQVAKGIIGHTVSDGQPKSCHVRTKTSIRAS CCCCEEEEECCCEEECCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHH YAQYCELQSGEDIELAVHSMNNDIVCGRNLTVLDASGKNGTLSGGDAKVGSKVLCSQLGV HHHHHHCCCCCCEEEEEEECCCCEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCC EGDTATKVEAFACYAVFKERIANLKEEYKSAQEGTMDVIRKELEFKKRPKAERTDEEQVQ CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHEE IEVLKAQNNERLDQVKQKLEHTEHDFEVSLEENIVEAKDRVFTRVTVQFGDEQVTTKCIH EEEEECCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHEEEEEEEEECCCHHHHHHEE GGCVFSFNQYEIKVAANLEEEDFVAI CCEEEEECCEEEEEEECCCCCCCCCC >Mature Secondary Structure GSNGLLMWKICLEWSEDRTRIFARLPEDVELESELNRKELPEQLQTMEASQAFVDEAEV CCCCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHH VRFINCARERKAEAYEGIVVAQIKNAQVDVELLNNDMLASMNITGAYGGRGLRGPEIVQA HHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHH LVHAQVLKGINKLALKKVMVVSNQLKPGETFTQPVAVGKQPTKGKDAIFTPLVKDITKRI HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHH LKPKEGQTTCDKIDLRNLGETIAVDIGDEVMRRTPATKGIPGFTVQGRVIPPQAGKDSPI CCCCCCCCCHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCEEEECEEECCCCCCCCCC KPGKGTEISKSDPNLLIASVSGTPLIKDKTIEVDNALCLNSVGVNTGHVKFKGNVIIGGN CCCCCCCCCCCCCCEEEEECCCCCEECCCEEECCCCEEECCCCCCCCEEEEECCEEECCC IESGMIVKATGSITVGGFIESADVQAEGDIQVAKGIIGHTVSDGQPKSCHVRTKTSIRAS CCCCEEEEECCCEEECCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHH YAQYCELQSGEDIELAVHSMNNDIVCGRNLTVLDASGKNGTLSGGDAKVGSKVLCSQLGV HHHHHHCCCCCCEEEEEEECCCCEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCC EGDTATKVEAFACYAVFKERIANLKEEYKSAQEGTMDVIRKELEFKKRPKAERTDEEQVQ CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHEE IEVLKAQNNERLDQVKQKLEHTEHDFEVSLEENIVEAKDRVFTRVTVQFGDEQVTTKCIH EEEEECCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHEEEEEEEEECCCHHHHHHEE GGCVFSFNQYEIKVAANLEEEDFVAI CCEEEEECCEEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA