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The map label for this gene is yhjC [C]

Identifier: 156978249

GI number: 156978249

Start: 2131582

End: 2132484

Strand: Direct

Name: yhjC [C]

Synonym: VIBHAR_07055

Alternate gene names: 156978249

Gene position: 2131582-2132484 (Clockwise)

Preceding gene: 156978247

Following gene: 156978250

Centisome position: 96.71

GC content: 45.4

Gene sequence:

>903_bases
ATGGAAATAAAGTGGCTAAGCTACGTGCCGATGTACATCGCTCTCTGTGAAGAGAGGAGTATTGCTGGTGCGGCGAAAAA
ACTGCGTTGCTCAAACGCACACGCGAGCCGTCAATTGAGGCAGTTAGAAGAGATTCTGTCAGTACAGTTGATTCAACGTA
CAACAAGGCAATTTAATCTAACTTACGATGGGCTGCGCTTTTATCAGCAAGTAAAGGGCTTGATGGATGGGGCAGAGCAG
ATTAATGAACAAGTGATGGAAAGTGACCGAGTCGCCGGGCATTTGCGCATCGCGGCATCGGTGTCATTTGGTGCGGTGTT
ATTGAACCGAGCCTTGATCGAGTTTCACCAATTATATCCGGAAGTGACGTTCGAAGTGATCTTCTCAGAAACGCCTTTGG
ATCTTATTCAGTCTGGCTTTGATGTGGCGTTTTTCTTCACAAACAATCCACCCGAGGGCTATATCGGCCACCATCTGCGC
TCTTTACACTGTAAACCGTTGGCACATAAAGCGTACTTGTCTAATAAACCAAGCATAACTACGCCGGAAGATCTTTATCT
GCTTGACCATATTGTGTATCGCAATGAAGTGTTAAATCTCGATACGTGGCACTTTCATCATATGGAAAACAAGCAAAAAG
TTTCAGTGGTTTTGCAAAGTGTACTCAGCTTTAATTTGGTTCAATCCATGCTTGAGGCCACTCTCGCGGGATGCGGCGTT
GCAATGTTGGATGAATTCGCATTGGAGAAACTCAGCGGTGAAGAGCGATCGCAACTCGTGCCGTTACTCCCTGAATGGCA
AACGGATGCGATCCTACCACTCTATATTCTTTATCCTAAACGTGAGCATTTACCAAAGCGAACGCAGGCGTTTATTGAGC
ATTTCAAACAGCAATCATTTTAA

Upstream 100 bases:

>100_bases
GCATTCATTCGTAATTCTCTGTTCCAATTTTAAGTTGTAAGCAGTGTAGAGCCTTTCTATTATTTCCAGTAGATTATTTT
TAGAGATTCATAATTACCAT

Downstream 100 bases:

>100_bases
GCTGTAATCATTTTAAACTGACAGGTTGTCTTGAGTGTGCAGCTCTCTTCGCAAGACGTGCAGATTGCGATTTCTTTTTC
AGGAGAACGCAAAGAGATTC

Product: transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MEIKWLSYVPMYIALCEERSIAGAAKKLRCSNAHASRQLRQLEEILSVQLIQRTTRQFNLTYDGLRFYQQVKGLMDGAEQ
INEQVMESDRVAGHLRIAASVSFGAVLLNRALIEFHQLYPEVTFEVIFSETPLDLIQSGFDVAFFFTNNPPEGYIGHHLR
SLHCKPLAHKAYLSNKPSITTPEDLYLLDHIVYRNEVLNLDTWHFHHMENKQKVSVVLQSVLSFNLVQSMLEATLAGCGV
AMLDEFALEKLSGEERSQLVPLLPEWQTDAILPLYILYPKREHLPKRTQAFIEHFKQQSF

Sequences:

>Translated_300_residues
MEIKWLSYVPMYIALCEERSIAGAAKKLRCSNAHASRQLRQLEEILSVQLIQRTTRQFNLTYDGLRFYQQVKGLMDGAEQ
INEQVMESDRVAGHLRIAASVSFGAVLLNRALIEFHQLYPEVTFEVIFSETPLDLIQSGFDVAFFFTNNPPEGYIGHHLR
SLHCKPLAHKAYLSNKPSITTPEDLYLLDHIVYRNEVLNLDTWHFHHMENKQKVSVVLQSVLSFNLVQSMLEATLAGCGV
AMLDEFALEKLSGEERSQLVPLLPEWQTDAILPLYILYPKREHLPKRTQAFIEHFKQQSF
>Mature_300_residues
MEIKWLSYVPMYIALCEERSIAGAAKKLRCSNAHASRQLRQLEEILSVQLIQRTTRQFNLTYDGLRFYQQVKGLMDGAEQ
INEQVMESDRVAGHLRIAASVSFGAVLLNRALIEFHQLYPEVTFEVIFSETPLDLIQSGFDVAFFFTNNPPEGYIGHHLR
SLHCKPLAHKAYLSNKPSITTPEDLYLLDHIVYRNEVLNLDTWHFHHMENKQKVSVVLQSVLSFNLVQSMLEATLAGCGV
AMLDEFALEKLSGEERSQLVPLLPEWQTDAILPLYILYPKREHLPKRTQAFIEHFKQQSF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=285, Percent_Identity=26.6666666666667, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=27.3972602739726, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1789440, Length=252, Percent_Identity=25.7936507936508, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787128, Length=301, Percent_Identity=24.2524916943522, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788706, Length=257, Percent_Identity=25.6809338521401, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=23.6301369863014, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=21.8430034129693, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34517; Mature: 34517

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIKWLSYVPMYIALCEERSIAGAAKKLRCSNAHASRQLRQLEEILSVQLIQRTTRQFNL
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TYDGLRFYQQVKGLMDGAEQINEQVMESDRVAGHLRIAASVSFGAVLLNRALIEFHQLYP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHH
EVTFEVIFSETPLDLIQSGFDVAFFFTNNPPEGYIGHHLRSLHCKPLAHKAYLSNKPSIT
HHEEHEEECCCCHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCC
TPEDLYLLDHIVYRNEVLNLDTWHFHHMENKQKVSVVLQSVLSFNLVQSMLEATLAGCGV
CCHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
AMLDEFALEKLSGEERSQLVPLLPEWQTDAILPLYILYPKREHLPKRTQAFIEHFKQQSF
HHHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEEEEEECCCHHCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEIKWLSYVPMYIALCEERSIAGAAKKLRCSNAHASRQLRQLEEILSVQLIQRTTRQFNL
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TYDGLRFYQQVKGLMDGAEQINEQVMESDRVAGHLRIAASVSFGAVLLNRALIEFHQLYP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHH
EVTFEVIFSETPLDLIQSGFDVAFFFTNNPPEGYIGHHLRSLHCKPLAHKAYLSNKPSIT
HHEEHEEECCCCHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCC
TPEDLYLLDHIVYRNEVLNLDTWHFHHMENKQKVSVVLQSVLSFNLVQSMLEATLAGCGV
CCHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
AMLDEFALEKLSGEERSQLVPLLPEWQTDAILPLYILYPKREHLPKRTQAFIEHFKQQSF
HHHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEEEEEECCCHHCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]