| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is yejA [C]
Identifier: 154246573
GI number: 154246573
Start: 2920262
End: 2922178
Strand: Direct
Name: yejA [C]
Synonym: Xaut_2632
Alternate gene names: 154246573
Gene position: 2920262-2922178 (Clockwise)
Preceding gene: 154246572
Following gene: 154246574
Centisome position: 55.01
GC content: 65.36
Gene sequence:
>1917_bases ATGCGCCTGCCGTCCGTTCGCCGCCTCGCCGTCCTCGCAGCCGTGGCGTGGGCCGCGGCCGCCCCGGGTGGCCTCGCGCA GGCGCAGGTGGCTCCCGCTGCCGGGGAAAGCCCCGCACCGGTGTTCCGCCACGGCCTCTCCCTCATGGGACAGCCGAAAT ATCCCGCCGGCTTTCCCCATTTCGATTATGTGAATCCGGCGGCGCCCAAGGGCGGCCTGCTGCGCCTGGCCGAAGACGGC ACCTTCGATACCTTCAACTTCGTGGTGCCGAGGGGCACGCCGGCGGCGGGCATCAATCTCATCTACGACACCCTCATGAC CGCCGCCTATGACGAGGTGTCGACCGAGTATGGCCTCATCGCCGAGGGCGCGAGCCATCCGGCCGATTTCTCCTCCGTCA CCTACCGGCTGCGGGCCGATGCCAAATGGCATGACGGCACCCCGATCACCCCTGACGACGTGGTGTTCTCCTTCGAGGCG CTGACGAAGAACAACCCCAACCAGCGCTTCTATTACAGCCACGTGGCGAAGGCGGAGAAGACCGGCGAGCGGGACGTGAC CTTCACCTTCGACCAGGCCGGCAACCGCGAGCTGCCGCAGATCGTGGGCCAGCTCACCATCCTGCCCAAGCACTGGTGGA CCGGCACCGATGCCGCCGGCAAGCCGCGCGACATCACCCAGGGCTCGCTGGAGGTGCCGCTGGGCTCCGGCGCCTACAGG ATCAAGAGCTTCGTGCCCAGTCGTTCCATCACCTACGAGCGGGTGAAGGATTATTGGGCCAAAGACCTTAACGTGAATGT GGGTAAGGATAATTTCGACGAGATCCGGTACGAGTATTTCCGCGACGACACGGTGATGCTGGAGGCCTTCAAGGCCGACA CCTATGATTTCCGCACCGAATCCTCCGCCAAGAACTGGGCCACGGCCTATGATTTCCCGGCGCGGGCGGACGGGCGGGTG GTGCTCGAAATGTTCGAGAACCGCGCGTCCGGCATCATGCAGGCCTTCATCCCCAACCTGCGGCGCGACAAGTTCAAGGA CCCGCGGGTGCGCCGCGCGCTGAACTATGCGCTGGATTTCGAGGGCATGAACCACACCCTCTTCTTCGGGCAGTACAAGC GCATCAATTCCTTCTTCTCCGGCACGGAGCTGGCCTCCTCCGGCCTGCCGCAGGGCCGCGAGCTGGAAATCCTGAAGGGC GTGAAGGACCTGGTGCCTCCGCAGGTGTTCACCACCGCCTACACCAATCCCGAGAGCGGAACGGAGGACTTGCGGCGGAA CAATCTGCGCGAGGCCTCCCGCCTGCTGAAGGATGCCGGCTACGAGATCAAGAACCGCAAGCTGGTGGACGCCAAGGGCG AGGCCTTCACGCTTGAACTGCTCATCTCCAGCCCGGCCATGGAGCGGGTGGCGGTGTTCTACAAGCCGGCGCTGGAGCGC CTCGGTATCACCGTCACCATCCGCCTCGTGGATTCCTCCCAGTACATCAACCGGGTGCGGGCGCGGGACTTCGACATGAT CGTCTCCGGCTGGGGCCAGTCCCTGTCGCCGGGCAACGAGCAGCGTGAGTTCTGGGGTACGGAAGCCGCCGACCGGGAGG GCTCGCGGAACCTCGCCGGCATCCGCGACAAGGCGGTGGACATCCTGATCGAGAAGGTGATCTACGCCACCGACCGGGCC GACCTTGTGGCCGCCACCCATGCCCTCGACCGGGTGCTGCTGTGGAACGAATATGTCGTCCCCGCCTGGACGTTGAATTA TACGCGCACAGCGCGATGGGACCGCTTCGCCCATCCGCCGACCCTGCCCACCTTCTCCTTCGCCTTCCCCGACATCTGGT GGTTCGATCCGGCCAAGGCGGCCAAGGTGAATGCGGTCGGCCCGGCAAGCGGGACCAACAGCGGGACCAGCAAATGA
Upstream 100 bases:
>100_bases CCATGTTTCTGCCGTCGCTCGCGGTGCCATAATCAGCTATTGCCGAGAGCGCTGAAGTCCCGTCCTGATTTGCGACCTGA GACCCGACCTGGAGAAACCG
Downstream 100 bases:
>100_bases GCCTGTCGCGCCGCACGCTGCTGCTGTCCGCCGCCTCCGCCGTCACCTTGCTGCCGGCCATGGCACGTGGGCAGCCGGCG CCGCAGGACGCGGCGGCGAA
Product: extracellular solute-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 638; Mature: 638
Protein sequence:
>638_residues MRLPSVRRLAVLAAVAWAAAAPGGLAQAQVAPAAGESPAPVFRHGLSLMGQPKYPAGFPHFDYVNPAAPKGGLLRLAEDG TFDTFNFVVPRGTPAAGINLIYDTLMTAAYDEVSTEYGLIAEGASHPADFSSVTYRLRADAKWHDGTPITPDDVVFSFEA LTKNNPNQRFYYSHVAKAEKTGERDVTFTFDQAGNRELPQIVGQLTILPKHWWTGTDAAGKPRDITQGSLEVPLGSGAYR IKSFVPSRSITYERVKDYWAKDLNVNVGKDNFDEIRYEYFRDDTVMLEAFKADTYDFRTESSAKNWATAYDFPARADGRV VLEMFENRASGIMQAFIPNLRRDKFKDPRVRRALNYALDFEGMNHTLFFGQYKRINSFFSGTELASSGLPQGRELEILKG VKDLVPPQVFTTAYTNPESGTEDLRRNNLREASRLLKDAGYEIKNRKLVDAKGEAFTLELLISSPAMERVAVFYKPALER LGITVTIRLVDSSQYINRVRARDFDMIVSGWGQSLSPGNEQREFWGTEAADREGSRNLAGIRDKAVDILIEKVIYATDRA DLVAATHALDRVLLWNEYVVPAWTLNYTRTARWDRFAHPPTLPTFSFAFPDIWWFDPAKAAKVNAVGPASGTNSGTSK
Sequences:
>Translated_638_residues MRLPSVRRLAVLAAVAWAAAAPGGLAQAQVAPAAGESPAPVFRHGLSLMGQPKYPAGFPHFDYVNPAAPKGGLLRLAEDG TFDTFNFVVPRGTPAAGINLIYDTLMTAAYDEVSTEYGLIAEGASHPADFSSVTYRLRADAKWHDGTPITPDDVVFSFEA LTKNNPNQRFYYSHVAKAEKTGERDVTFTFDQAGNRELPQIVGQLTILPKHWWTGTDAAGKPRDITQGSLEVPLGSGAYR IKSFVPSRSITYERVKDYWAKDLNVNVGKDNFDEIRYEYFRDDTVMLEAFKADTYDFRTESSAKNWATAYDFPARADGRV VLEMFENRASGIMQAFIPNLRRDKFKDPRVRRALNYALDFEGMNHTLFFGQYKRINSFFSGTELASSGLPQGRELEILKG VKDLVPPQVFTTAYTNPESGTEDLRRNNLREASRLLKDAGYEIKNRKLVDAKGEAFTLELLISSPAMERVAVFYKPALER LGITVTIRLVDSSQYINRVRARDFDMIVSGWGQSLSPGNEQREFWGTEAADREGSRNLAGIRDKAVDILIEKVIYATDRA DLVAATHALDRVLLWNEYVVPAWTLNYTRTARWDRFAHPPTLPTFSFAFPDIWWFDPAKAAKVNAVGPASGTNSGTSK >Mature_638_residues MRLPSVRRLAVLAAVAWAAAAPGGLAQAQVAPAAGESPAPVFRHGLSLMGQPKYPAGFPHFDYVNPAAPKGGLLRLAEDG TFDTFNFVVPRGTPAAGINLIYDTLMTAAYDEVSTEYGLIAEGASHPADFSSVTYRLRADAKWHDGTPITPDDVVFSFEA LTKNNPNQRFYYSHVAKAEKTGERDVTFTFDQAGNRELPQIVGQLTILPKHWWTGTDAAGKPRDITQGSLEVPLGSGAYR IKSFVPSRSITYERVKDYWAKDLNVNVGKDNFDEIRYEYFRDDTVMLEAFKADTYDFRTESSAKNWATAYDFPARADGRV VLEMFENRASGIMQAFIPNLRRDKFKDPRVRRALNYALDFEGMNHTLFFGQYKRINSFFSGTELASSGLPQGRELEILKG VKDLVPPQVFTTAYTNPESGTEDLRRNNLREASRLLKDAGYEIKNRKLVDAKGEAFTLELLISSPAMERVAVFYKPALER LGITVTIRLVDSSQYINRVRARDFDMIVSGWGQSLSPGNEQREFWGTEAADREGSRNLAGIRDKAVDILIEKVIYATDRA DLVAATHALDRVLLWNEYVVPAWTLNYTRTARWDRFAHPPTLPTFSFAFPDIWWFDPAKAAKVNAVGPASGTNSGTSK
Specific function: Possible binding-protein with either a transport or enzymatic activity [H]
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI87082063, Length=583, Percent_Identity=37.3927958833619, Blast_Score=386, Evalue=1e-108,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 71171; Mature: 71171
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLPSVRRLAVLAAVAWAAAAPGGLAQAQVAPAAGESPAPVFRHGLSLMGQPKYPAGFPH CCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCC FDYVNPAAPKGGLLRLAEDGTFDTFNFVVPRGTPAAGINLIYDTLMTAAYDEVSTEYGLI CCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE AEGASHPADFSSVTYRLRADAKWHDGTPITPDDVVFSFEALTKNNPNQRFYYSHVAKAEK ECCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHEEEEHHHHCCCCCCEEEHHHHHHHHH TGERDVTFTFDQAGNRELPQIVGQLTILPKHWWTGTDAAGKPRDITQGSLEVPLGSGAYR CCCCCEEEEECCCCCCHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHH IKSFVPSRSITYERVKDYWAKDLNVNVGKDNFDEIRYEYFRDDTVMLEAFKADTYDFRTE HHHHCCCCCCHHHHHHHHHHHCCEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCC SSAKNWATAYDFPARADGRVVLEMFENRASGIMQAFIPNLRRDKFKDPRVRRALNYALDF CCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHEEC EGMNHTLFFGQYKRINSFFSGTELASSGLPQGRELEILKGVKDLVPPQVFTTAYTNPESG CCCCEEEEEHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC TEDLRRNNLREASRLLKDAGYEIKNRKLVDAKGEAFTLELLISSPAMERVAVFYKPALER HHHHHHCCHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHH LGITVTIRLVDSSQYINRVRARDFDMIVSGWGQSLSPGNEQREFWGTEAADREGSRNLAG CCEEEEEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC IRDKAVDILIEKVIYATDRADLVAATHALDRVLLWNEYVVPAWTLNYTRTARWDRFAHPP HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEECEEEEECCCCCCCCCCCCCCC TLPTFSFAFPDIWWFDPAKAAKVNAVGPASGTNSGTSK CCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCC >Mature Secondary Structure MRLPSVRRLAVLAAVAWAAAAPGGLAQAQVAPAAGESPAPVFRHGLSLMGQPKYPAGFPH CCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCC FDYVNPAAPKGGLLRLAEDGTFDTFNFVVPRGTPAAGINLIYDTLMTAAYDEVSTEYGLI CCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE AEGASHPADFSSVTYRLRADAKWHDGTPITPDDVVFSFEALTKNNPNQRFYYSHVAKAEK ECCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHEEEEHHHHCCCCCCEEEHHHHHHHHH TGERDVTFTFDQAGNRELPQIVGQLTILPKHWWTGTDAAGKPRDITQGSLEVPLGSGAYR CCCCCEEEEECCCCCCHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHH IKSFVPSRSITYERVKDYWAKDLNVNVGKDNFDEIRYEYFRDDTVMLEAFKADTYDFRTE HHHHCCCCCCHHHHHHHHHHHCCEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCC SSAKNWATAYDFPARADGRVVLEMFENRASGIMQAFIPNLRRDKFKDPRVRRALNYALDF CCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHEEC EGMNHTLFFGQYKRINSFFSGTELASSGLPQGRELEILKGVKDLVPPQVFTTAYTNPESG CCCCEEEEEHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC TEDLRRNNLREASRLLKDAGYEIKNRKLVDAKGEAFTLELLISSPAMERVAVFYKPALER HHHHHHCCHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHH LGITVTIRLVDSSQYINRVRARDFDMIVSGWGQSLSPGNEQREFWGTEAADREGSRNLAG CCEEEEEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC IRDKAVDILIEKVIYATDRADLVAATHALDRVLLWNEYVVPAWTLNYTRTARWDRFAHPP HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEECEEEEECCCCCCCCCCCCCCC TLPTFSFAFPDIWWFDPAKAAKVNAVGPASGTNSGTSK CCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]