| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is yejA [H]
Identifier: 154246574
GI number: 154246574
Start: 2922175
End: 2924064
Strand: Direct
Name: yejA [H]
Synonym: Xaut_2633
Alternate gene names: 154246574
Gene position: 2922175-2924064 (Clockwise)
Preceding gene: 154246573
Following gene: 154246575
Centisome position: 55.04
GC content: 68.41
Gene sequence:
>1890_bases ATGAGCCTGTCGCGCCGCACGCTGCTGCTGTCCGCCGCCTCCGCCGTCACCTTGCTGCCGGCCATGGCACGTGGGCAGCC GGCGCCGCAGGACGCGGCGGCGAACGAGGGCGCGGCCGCCTCCGCCGCGGTGGAGCGGCACGGCCTGTCCTTCTTCGGCG ACCTGCGGTATCCGGCCGGCTTCACCCATTTCGACTATGTGGACCCGGACGCGCCCAAGGGCGGTCCCTTCTCCCAGATG GGCCGGGCGACCTTCTACAACCAGTCGCTCAACACCTTCGACACGCTGAACCCCTACAACCAGCGCGGCAACGGCGCCCA GGGCATCGAGCTGATCTACGATACGCTGATGACCGCCGCCGGCGACGAGAAGAGCGCCATGTACGGCCGCCTCGCCAGCT CGGTGGTGATCGCCGACGAGGGGCTCACCTACCGCTTCAAGCTGCGCCCGCAGGCGCGCTTCCATGACGGCACGCCTGTG ACGGCGGACGACGTGGTGGCGACCTTCGAGGCCTTCAAGGCCGACGCCTACGAGACCATCCGCATGGCCCTGCGCGATCT CACCGCCGTGGAGGCGGATGGGCCGGGCGAGGTGGTGATGCGCTTCCGCCCCGGCCGCGCCCGCGACGTGCCGCTCACCG CCGCCGGACTGCCGATCTTCTCTCGCGCCTTCCTGGCGAAGCACCCGTTCAACCAGTCCTCGCTGGAAGTACCGCTGGGC TCGGGGCCATATCGGGTGAAGAAGTTCGAGCAGGGCCGCTTCATCGAATATGAGCGGGTGCCCGACTATTGGGGCCGCGA CCTGCCGGTGATGAAGGGCCGCTTCAACTTCGACACGGTGCGCTACGAATATTTCCGCGACCGGGTGGCGGGCCTGGAAG GCTTCAAGGCCAGGGCCTATCTGTTCCGCGAGGAGTTCACCGCTCGCGAATGGGCCACCGCCTATGATTTCCCCGCCGTG CGCGAGGGGCGGGTGAAGGTGGAGACCCTGCCGGACAATTCCTTTTCCGGCGTGCAGGGCTGGTTCTTCAACACCCGCCG CCCCAAGTTCTTCGACCGGCGCGTGCGCGAGGCCATCGGGATCCTGTTCGACTTCGACTGGACCCGCAAGAACCTGATGT ACGATAGCTACACCCGCACCGTCTCCTTCTTCCAGAATTCGGAGATGATGGCGCAGGGGCTGCCCTCGCCCGCCGAACTG AAGCTCTTGGAACCGTTCCGCGACCGCCTGCCGGAAGAGGTGTTCGGCGAGCCCTATGTCCCGCCGGTCTCCGACGGCAG CGGAGAAGACCGCAACCTGCGCCGGCAGGCCCTCGCCCTCCTGAAGGATGCCGGCTGGAACGTGCAGCAGGGCAAGCTCG TCGACGCCAAGGGCGAGGCCTTCACCATCGAGTTCCTGGATGATGACGGCGGCATGGAGCGCCATACGGCGCGCTTCATC GGCCACCTGAAGAAAGTGGGCATCGACGCCACCTTCCGCATCGTGGACCCGGCCCAGTTCCAGCTGCGGCTGCAGGGCTT CGACTTCGACATGGTGGTGCGCCGCTATTCCTTCGCGCCCTATCCGGGCGACGAACTGCGCGCCTATTTCTCGACCGAGG CGGCGCGCACCCGCGGCTCCTACAACGTGGCCGGCATCGCCGACCCGGCGGTGGACGGGCTCATCAACGCGGCGCTGGCC GCCCCGGACGCTGCCGCCCTCGTGGTCGCCTGCCAGGCGCTGGACCGGGTGCTGCGTGCCGGGCGCTACTGGATCCCCCA GTGGTATTCCGGCCAGCACCGCATCGCCTACTGGAACCAGTTCGCCCGCCCTGCCACCAAGCCGCGCTACGACCTGGGCG CGCTCGACACCTGGTGGAGCACCGGCACGGAGCCGGCCAGAGGCGGGTGA
Upstream 100 bases:
>100_bases TCTCCTTCGCCTTCCCCGACATCTGGTGGTTCGATCCGGCCAAGGCGGCCAAGGTGAATGCGGTCGGCCCGGCAAGCGGG ACCAACAGCGGGACCAGCAA
Downstream 100 bases:
>100_bases AGCCCGCGCTTGAGGATCGACGGTTGACGGTGCGCCGGCTTGGCTGCACCGTCCGGCCGGATCGGGAGACGTGATGCTCG CTTATATCATCCGCCGCATA
Product: extracellular solute-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 629; Mature: 628
Protein sequence:
>629_residues MSLSRRTLLLSAASAVTLLPAMARGQPAPQDAAANEGAAASAAVERHGLSFFGDLRYPAGFTHFDYVDPDAPKGGPFSQM GRATFYNQSLNTFDTLNPYNQRGNGAQGIELIYDTLMTAAGDEKSAMYGRLASSVVIADEGLTYRFKLRPQARFHDGTPV TADDVVATFEAFKADAYETIRMALRDLTAVEADGPGEVVMRFRPGRARDVPLTAAGLPIFSRAFLAKHPFNQSSLEVPLG SGPYRVKKFEQGRFIEYERVPDYWGRDLPVMKGRFNFDTVRYEYFRDRVAGLEGFKARAYLFREEFTAREWATAYDFPAV REGRVKVETLPDNSFSGVQGWFFNTRRPKFFDRRVREAIGILFDFDWTRKNLMYDSYTRTVSFFQNSEMMAQGLPSPAEL KLLEPFRDRLPEEVFGEPYVPPVSDGSGEDRNLRRQALALLKDAGWNVQQGKLVDAKGEAFTIEFLDDDGGMERHTARFI GHLKKVGIDATFRIVDPAQFQLRLQGFDFDMVVRRYSFAPYPGDELRAYFSTEAARTRGSYNVAGIADPAVDGLINAALA APDAAALVVACQALDRVLRAGRYWIPQWYSGQHRIAYWNQFARPATKPRYDLGALDTWWSTGTEPARGG
Sequences:
>Translated_629_residues MSLSRRTLLLSAASAVTLLPAMARGQPAPQDAAANEGAAASAAVERHGLSFFGDLRYPAGFTHFDYVDPDAPKGGPFSQM GRATFYNQSLNTFDTLNPYNQRGNGAQGIELIYDTLMTAAGDEKSAMYGRLASSVVIADEGLTYRFKLRPQARFHDGTPV TADDVVATFEAFKADAYETIRMALRDLTAVEADGPGEVVMRFRPGRARDVPLTAAGLPIFSRAFLAKHPFNQSSLEVPLG SGPYRVKKFEQGRFIEYERVPDYWGRDLPVMKGRFNFDTVRYEYFRDRVAGLEGFKARAYLFREEFTAREWATAYDFPAV REGRVKVETLPDNSFSGVQGWFFNTRRPKFFDRRVREAIGILFDFDWTRKNLMYDSYTRTVSFFQNSEMMAQGLPSPAEL KLLEPFRDRLPEEVFGEPYVPPVSDGSGEDRNLRRQALALLKDAGWNVQQGKLVDAKGEAFTIEFLDDDGGMERHTARFI GHLKKVGIDATFRIVDPAQFQLRLQGFDFDMVVRRYSFAPYPGDELRAYFSTEAARTRGSYNVAGIADPAVDGLINAALA APDAAALVVACQALDRVLRAGRYWIPQWYSGQHRIAYWNQFARPATKPRYDLGALDTWWSTGTEPARGG >Mature_628_residues SLSRRTLLLSAASAVTLLPAMARGQPAPQDAAANEGAAASAAVERHGLSFFGDLRYPAGFTHFDYVDPDAPKGGPFSQMG RATFYNQSLNTFDTLNPYNQRGNGAQGIELIYDTLMTAAGDEKSAMYGRLASSVVIADEGLTYRFKLRPQARFHDGTPVT ADDVVATFEAFKADAYETIRMALRDLTAVEADGPGEVVMRFRPGRARDVPLTAAGLPIFSRAFLAKHPFNQSSLEVPLGS GPYRVKKFEQGRFIEYERVPDYWGRDLPVMKGRFNFDTVRYEYFRDRVAGLEGFKARAYLFREEFTAREWATAYDFPAVR EGRVKVETLPDNSFSGVQGWFFNTRRPKFFDRRVREAIGILFDFDWTRKNLMYDSYTRTVSFFQNSEMMAQGLPSPAELK LLEPFRDRLPEEVFGEPYVPPVSDGSGEDRNLRRQALALLKDAGWNVQQGKLVDAKGEAFTIEFLDDDGGMERHTARFIG HLKKVGIDATFRIVDPAQFQLRLQGFDFDMVVRRYSFAPYPGDELRAYFSTEAARTRGSYNVAGIADPAVDGLINAALAA PDAAALVVACQALDRVLRAGRYWIPQWYSGQHRIAYWNQFARPATKPRYDLGALDTWWSTGTEPARGG
Specific function: Unknown
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae hbpA [H]
Homologues:
Organism=Escherichia coli, GI87082063, Length=594, Percent_Identity=38.047138047138, Blast_Score=396, Evalue=1e-111,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 70532; Mature: 70401
Theoretical pI: Translated: 7.23; Mature: 7.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLSRRTLLLSAASAVTLLPAMARGQPAPQDAAANEGAAASAAVERHGLSFFGDLRYPAG CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCEECCCCCCC FTHFDYVDPDAPKGGPFSQMGRATFYNQSLNTFDTLNPYNQRGNGAQGIELIYDTLMTAA CCCCCCCCCCCCCCCCHHHHCCCEEECCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHC GDEKSAMYGRLASSVVIADEGLTYRFKLRPQARFHDGTPVTADDVVATFEAFKADAYETI CCCHHHHHHHHHCEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RMALRDLTAVEADGPGEVVMRFRPGRARDVPLTAAGLPIFSRAFLAKHPFNQSSLEVPLG HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEECC SGPYRVKKFEQGRFIEYERVPDYWGRDLPVMKGRFNFDTVRYEYFRDRVAGLEGFKARAY CCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHH LFREEFTAREWATAYDFPAVREGRVKVETLPDNSFSGVQGWFFNTRRPKFFDRRVREAIG HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHC ILFDFDWTRKNLMYDSYTRTVSFFQNSEMMAQGLPSPAELKLLEPFRDRLPEEVFGEPYV EEEECCCCHHHCCHHHHHHHHHHHCCCHHHHHCCCCCHHEEEECHHHHCCCHHHCCCCCC PPVSDGSGEDRNLRRQALALLKDAGWNVQQGKLVDAKGEAFTIEFLDDDGGMERHTARFI CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEECCCCCCHHHHHHHH GHLKKVGIDATFRIVDPAQFQLRLQGFDFDMVVRRYSFAPYPGDELRAYFSTEAARTRGS HHHHHCCCCEEEEEECCCEEEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC YNVAGIADPAVDGLINAALAAPDAAALVVACQALDRVLRAGRYWIPQWYSGQHRIAYWNQ CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEEEHHHH FARPATKPRYDLGALDTWWSTGTEPARGG HCCCCCCCCCCCCCCHHHHCCCCCCCCCC >Mature Secondary Structure SLSRRTLLLSAASAVTLLPAMARGQPAPQDAAANEGAAASAAVERHGLSFFGDLRYPAG CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCEECCCCCCC FTHFDYVDPDAPKGGPFSQMGRATFYNQSLNTFDTLNPYNQRGNGAQGIELIYDTLMTAA CCCCCCCCCCCCCCCCHHHHCCCEEECCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHC GDEKSAMYGRLASSVVIADEGLTYRFKLRPQARFHDGTPVTADDVVATFEAFKADAYETI CCCHHHHHHHHHCEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RMALRDLTAVEADGPGEVVMRFRPGRARDVPLTAAGLPIFSRAFLAKHPFNQSSLEVPLG HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEECC SGPYRVKKFEQGRFIEYERVPDYWGRDLPVMKGRFNFDTVRYEYFRDRVAGLEGFKARAY CCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHH LFREEFTAREWATAYDFPAVREGRVKVETLPDNSFSGVQGWFFNTRRPKFFDRRVREAIG HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHC ILFDFDWTRKNLMYDSYTRTVSFFQNSEMMAQGLPSPAELKLLEPFRDRLPEEVFGEPYV EEEECCCCHHHCCHHHHHHHHHHHCCCHHHHHCCCCCHHEEEECHHHHCCCHHHCCCCCC PPVSDGSGEDRNLRRQALALLKDAGWNVQQGKLVDAKGEAFTIEFLDDDGGMERHTARFI CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEECCCCCCHHHHHHHH GHLKKVGIDATFRIVDPAQFQLRLQGFDFDMVVRRYSFAPYPGDELRAYFSTEAARTRGS HHHHHCCCCEEEEEECCCEEEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC YNVAGIADPAVDGLINAALAAPDAAALVVACQALDRVLRAGRYWIPQWYSGQHRIAYWNQ CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEEEHHHH FARPATKPRYDLGALDTWWSTGTEPARGG HCCCCCCCCCCCCCCHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 9097040 [H]