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The map label for this gene is cycM [H]

Identifier: 154246572

GI number: 154246572

Start: 2919437

End: 2919982

Strand: Direct

Name: cycM [H]

Synonym: Xaut_2631

Alternate gene names: 154246572

Gene position: 2919437-2919982 (Clockwise)

Preceding gene: 154246569

Following gene: 154246573

Centisome position: 54.99

GC content: 68.5

Gene sequence:

>546_bases
ATGGACTTTTTTGAATTGAACAAGATTGCAGGTGCGGTTCTGGGCACCCTGGCGCTCACCCTCGGGCTGGGGATCGCGTC
GCAGATCCTGTTCACGCCTGAGGCGCCCGCCAAGCCCGGCTTCGATATCGTCGTGCAGGAAGGCGCCGCCGGCGGCGCCG
CCCCGGCCAAGGCCGCGGAAGTGCCGATCGAGCAGCTGTTCGCTACCGCCTCCGTCGAGAAGGGCGCGGCCGTCGCCAAG
AAGTGCGCCGCCTGCCACAACTTCCAGGAAGGCGCCGGCGCCAAGGTGGGGCCGGACCTCTATGGCGTCGTGGGCCGCCC
GGTGGCTTCAGCTGCGGGCTTTGCCTATTCCGCCGCCATGAAGGCGAAGGGCGGCGACTGGACGGCCCTTGCCCTCAACA
CCTTCCTGACCAGCCCGAAGACCGCGGTGCCCGGCACCGCCATGGCCTTCGCCGGCATCCCGAAGGAAGCCGAGCGGGCG
GACCTCATCGCCTATCTCAACAGCCTCTCCCACGATCCCAAGCCGCTGCCGACCGCCGCGAAGTAG

Upstream 100 bases:

>100_bases
TTCGCGCGCCGCTCATCGACATGCTTGCACGCCCGGCCGGATCTTTCATCCCATGCGCCGCGGCAGCGAGGATCTAAGGG
CTCCGAGGGGCGAAGCGCCG

Downstream 100 bases:

>100_bases
GATCGGGGCTGCGCCGCCCCCAGGGGCGGGCGTCATTCTCTTTCACGCCATTGTCATCCGGGCTGCCGGGTGCCGAAATG
CCAAGGCCGATCCTTCGCGG

Product: cytochrome c class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MDFFELNKIAGAVLGTLALTLGLGIASQILFTPEAPAKPGFDIVVQEGAAGGAAPAKAAEVPIEQLFATASVEKGAAVAK
KCAACHNFQEGAGAKVGPDLYGVVGRPVASAAGFAYSAAMKAKGGDWTALALNTFLTSPKTAVPGTAMAFAGIPKEAERA
DLIAYLNSLSHDPKPLPTAAK

Sequences:

>Translated_181_residues
MDFFELNKIAGAVLGTLALTLGLGIASQILFTPEAPAKPGFDIVVQEGAAGGAAPAKAAEVPIEQLFATASVEKGAAVAK
KCAACHNFQEGAGAKVGPDLYGVVGRPVASAAGFAYSAAMKAKGGDWTALALNTFLTSPKTAVPGTAMAFAGIPKEAERA
DLIAYLNSLSHDPKPLPTAAK
>Mature_181_residues
MDFFELNKIAGAVLGTLALTLGLGIASQILFTPEAPAKPGFDIVVQEGAAGGAAPAKAAEVPIEQLFATASVEKGAAVAK
KCAACHNFQEGAGAKVGPDLYGVVGRPVASAAGFAYSAAMKAKGGDWTALALNTFLTSPKTAVPGTAMAFAGIPKEAERA
DLIAYLNSLSHDPKPLPTAAK

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=103, Percent_Identity=44.6601941747573, Blast_Score=98, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17539604, Length=95, Percent_Identity=48.4210526315789, Blast_Score=91, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17566554, Length=95, Percent_Identity=46.3157894736842, Blast_Score=83, Evalue=6e-17,
Organism=Saccharomyces cerevisiae, GI6320796, Length=101, Percent_Identity=42.5742574257426, Blast_Score=97, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6322508, Length=101, Percent_Identity=42.5742574257426, Blast_Score=94, Evalue=2e-20,
Organism=Drosophila melanogaster, GI17137228, Length=99, Percent_Identity=50.5050505050505, Blast_Score=103, Evalue=8e-23,
Organism=Drosophila melanogaster, GI17137204, Length=103, Percent_Identity=46.6019417475728, Blast_Score=99, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 18196; Mature: 18196

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFFELNKIAGAVLGTLALTLGLGIASQILFTPEAPAKPGFDIVVQEGAAGGAAPAKAAE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEECCCCCCCCCCHHHH
VPIEQLFATASVEKGAAVAKKCAACHNFQEGAGAKVGPDLYGVVGRPVASAAGFAYSAAM
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHH
KAKGGDWTALALNTFLTSPKTAVPGTAMAFAGIPKEAERADLIAYLNSLSHDPKPLPTAA
HCCCCCEEHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
K
C
>Mature Secondary Structure
MDFFELNKIAGAVLGTLALTLGLGIASQILFTPEAPAKPGFDIVVQEGAAGGAAPAKAAE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEECCCCCCCCCCHHHH
VPIEQLFATASVEKGAAVAKKCAACHNFQEGAGAKVGPDLYGVVGRPVASAAGFAYSAAM
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHH
KAKGGDWTALALNTFLTSPKTAVPGTAMAFAGIPKEAERADLIAYLNSLSHDPKPLPTAA
HCCCCCEEHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1657867; 12597275 [H]