| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is yleA [C]
Identifier: 154244369
GI number: 154244369
Start: 442417
End: 443730
Strand: Direct
Name: yleA [C]
Synonym: Xaut_0412
Alternate gene names: 154244369
Gene position: 442417-443730 (Clockwise)
Preceding gene: 154244368
Following gene: 154244370
Centisome position: 8.33
GC content: 73.67
Gene sequence:
>1314_bases ATGGCGGCTTCTTCGGTTCCGGCCGCTTCCTCGGCGCCCGCAGCGCCGGGCACGGCCGTGCGTGTCGTCTCCTTCGGCTG CCGGCTCAATGCGCTGGAAGGCGACGGTATCGCCCGCGCCGCCACCGCCGAGGGGCTGGAGCGCACCCTCGTGTTCAACA CCTGCGCCGTCACGGGTGAGGCGGTGCGGCAGGCGCGGCAGGCCATCCGCCGGGCGCGGCGGGAGGATCCCGACCTGCGC GTCATCGTCACCGGCTGCGCCGCCCAGACCGACCCGCAGGCCTTCGCCCGCATGGACGAGGTGGACCTCGTGCTGGGCAA TGCCGACAAGACCCTTCCCGCCGCGTGGGCCACGACCCGTGCCGCCCTCGATTTCGGCATCGGCGCCGAGCAGAAGGTGC GGGTGCAGGATATCTCGGCGGTGCGCGCGGCCACCCCCCATCTCGCCGACCGGTTCGAGGGGCACACCCGCGCCTTCGTG GAGGTGCAGAACGGCTGCGACCACCGCTGCACCTTCTGCATCATCCCGTTCGGTCGTGGCCCCTCGCGTTCCGTGCCCAT GGGCGCGGTGGTGGATCAGGTGCGGCGTCTGGTGGCGAACGGCCACCGCGAGGTGGTGCTCACCGGCGTCGACCTCACCG CCTACGGTGCCGACCTGCCTGGCGCGCCCACCCTGGGCCGGCTGGTGCGCTCGGTGCTCACCGGCGTGCCGGACCTTCCC CGCCTGCGCCTCTCCTCCATCGACGCGGTGGAGGCCGACGACGAGCTGATGCGGGCGCTGGCTGAGGAAGAGCGGCTGAT GCCGCATCTCCACCTCTCGCTCCAGGCCGGCGACGACCTCATCCTGAAGCGCATGAAGCGCCGGCATTCCCGTGCGCAGG CGCTGGACTTCATCTCCGCCCTGCGCCGGGCGCGTCCGGATGTGGTGCTGGGCGCCGACATCATCGCCGGCTTTCCCACC GAGACCGAGGAACAGGCCCGCGCCACCCGCGCCTTCCTCGACGAGGCGGGCCTCGCCTTCGTCCATGTCTTCCCGTTCTC GGCGCGGCCCGGCACCGCCGCCGCCCGCATGCCGCAGCTTCCCGCCGGCGTGGTGGCGGAGCGCGCGCGCCGGCTGCGCG AGACCGCCGCCGACCTGCTGCGTCGTCATCTCGCAAGCGAGGTGGGCCGGCGCCGGCAGGTGCTGGTGGAGGCCGGCGGA CGTGGCCATACCGAACATTTCACCCCGGTGCGCCTCGCCTGGCCGGCCGAGCGCGGCAGCCTCGCGGCGCTGCGCATCGC CGGACACGACGGCGCGCGCCTGATCGCGGCGTGA
Upstream 100 bases:
>100_bases TTTCCTGGCGCGAAGCCGACGGCCACGTGCTGATGACCGGCCCGGTGGAGCACGAGTTCTCCGGCACTCTCTCCCCGGCC ATGCTGGAGGAGGCCGCCTG
Downstream 100 bases:
>100_bases CCCCTCTTCAAGGAACGGCCTGAGCCATGAGCGACAACGACCGGAATTCCCCCGCTGACGCGCAGAAGAAGAAGCGCGGC CTGTGGGGCTGGCTGAAGTC
Product: MiaB-like tRNA modifying protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 437; Mature: 436
Protein sequence:
>437_residues MAASSVPAASSAPAAPGTAVRVVSFGCRLNALEGDGIARAATAEGLERTLVFNTCAVTGEAVRQARQAIRRARREDPDLR VIVTGCAAQTDPQAFARMDEVDLVLGNADKTLPAAWATTRAALDFGIGAEQKVRVQDISAVRAATPHLADRFEGHTRAFV EVQNGCDHRCTFCIIPFGRGPSRSVPMGAVVDQVRRLVANGHREVVLTGVDLTAYGADLPGAPTLGRLVRSVLTGVPDLP RLRLSSIDAVEADDELMRALAEEERLMPHLHLSLQAGDDLILKRMKRRHSRAQALDFISALRRARPDVVLGADIIAGFPT ETEEQARATRAFLDEAGLAFVHVFPFSARPGTAAARMPQLPAGVVAERARRLRETAADLLRRHLASEVGRRRQVLVEAGG RGHTEHFTPVRLAWPAERGSLAALRIAGHDGARLIAA
Sequences:
>Translated_437_residues MAASSVPAASSAPAAPGTAVRVVSFGCRLNALEGDGIARAATAEGLERTLVFNTCAVTGEAVRQARQAIRRARREDPDLR VIVTGCAAQTDPQAFARMDEVDLVLGNADKTLPAAWATTRAALDFGIGAEQKVRVQDISAVRAATPHLADRFEGHTRAFV EVQNGCDHRCTFCIIPFGRGPSRSVPMGAVVDQVRRLVANGHREVVLTGVDLTAYGADLPGAPTLGRLVRSVLTGVPDLP RLRLSSIDAVEADDELMRALAEEERLMPHLHLSLQAGDDLILKRMKRRHSRAQALDFISALRRARPDVVLGADIIAGFPT ETEEQARATRAFLDEAGLAFVHVFPFSARPGTAAARMPQLPAGVVAERARRLRETAADLLRRHLASEVGRRRQVLVEAGG RGHTEHFTPVRLAWPAERGSLAALRIAGHDGARLIAA >Mature_436_residues AASSVPAASSAPAAPGTAVRVVSFGCRLNALEGDGIARAATAEGLERTLVFNTCAVTGEAVRQARQAIRRARREDPDLRV IVTGCAAQTDPQAFARMDEVDLVLGNADKTLPAAWATTRAALDFGIGAEQKVRVQDISAVRAATPHLADRFEGHTRAFVE VQNGCDHRCTFCIIPFGRGPSRSVPMGAVVDQVRRLVANGHREVVLTGVDLTAYGADLPGAPTLGRLVRSVLTGVPDLPR LRLSSIDAVEADDELMRALAEEERLMPHLHLSLQAGDDLILKRMKRRHSRAQALDFISALRRARPDVVLGADIIAGFPTE TEEQARATRAFLDEAGLAFVHVFPFSARPGTAAARMPQLPAGVVAERARRLRETAADLLRRHLASEVGRRRQVLVEAGGR GHTEHFTPVRLAWPAERGSLAALRIAGHDGARLIAA
Specific function: Unknown
COG id: COG0621
COG function: function code J; 2-methylthioadenine synthetase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 MTTase N-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI93277076, Length=410, Percent_Identity=25.609756097561, Blast_Score=135, Evalue=1e-31, Organism=Homo sapiens, GI28872782, Length=380, Percent_Identity=25.2631578947368, Blast_Score=117, Evalue=3e-26, Organism=Homo sapiens, GI28872784, Length=380, Percent_Identity=25.2631578947368, Blast_Score=116, Evalue=5e-26, Organism=Escherichia coli, GI1786882, Length=407, Percent_Identity=28.7469287469287, Blast_Score=147, Evalue=1e-36, Organism=Escherichia coli, GI1787057, Length=400, Percent_Identity=28.25, Blast_Score=140, Evalue=1e-34, Organism=Caenorhabditis elegans, GI17553146, Length=438, Percent_Identity=26.2557077625571, Blast_Score=130, Evalue=1e-30, Organism=Caenorhabditis elegans, GI71996771, Length=266, Percent_Identity=26.3157894736842, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI21356207, Length=457, Percent_Identity=27.5711159737418, Blast_Score=154, Evalue=1e-37, Organism=Drosophila melanogaster, GI19922432, Length=395, Percent_Identity=26.8354430379747, Blast_Score=127, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR020612 - InterPro: IPR013848 - InterPro: IPR006467 - InterPro: IPR007197 [H]
Pfam domain/function: PF04055 Radical_SAM; PF00919 UPF0004 [H]
EC number: NA
Molecular weight: Translated: 46905; Mature: 46774
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: PS01278 UPF0004
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAASSVPAASSAPAAPGTAVRVVSFGCRLNALEGDGIARAATAEGLERTLVFNTCAVTGE CCCCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCCHHHHHHHHHHHHHEEHHHHCCHH AVRQARQAIRRARREDPDLRVIVTGCAAQTDPQAFARMDEVDLVLGNADKTLPAAWATTR HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHCCCEEEECCCCCCCCHHHHHHH AALDFGIGAEQKVRVQDISAVRAATPHLADRFEGHTRAFVEVQNGCDHRCTFCIIPFGRG HHHHHCCCCCCEEEHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCC PSRSVPMGAVVDQVRRLVANGHREVVLTGVDLTAYGADLPGAPTLGRLVRSVLTGVPDLP CCCCCCHHHHHHHHHHHHHCCCCEEEEEECEEEEECCCCCCCCHHHHHHHHHHHCCCCCC RLRLSSIDAVEADDELMRALAEEERLMPHLHLSLQAGDDLILKRMKRRHSRAQALDFISA CHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH LRRARPDVVLGADIIAGFPTETEEQARATRAFLDEAGLAFVHVFPFSARPGTAAARMPQL HHHCCCCEEECHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHCCCC PAGVVAERARRLRETAADLLRRHLASEVGRRRQVLVEAGGRGHTEHFTPVRLAWPAERGS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEEECCCCCCC LAALRIAGHDGARLIAA EEEEEEECCCCCEEECC >Mature Secondary Structure AASSVPAASSAPAAPGTAVRVVSFGCRLNALEGDGIARAATAEGLERTLVFNTCAVTGE CCCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCCHHHHHHHHHHHHHEEHHHHCCHH AVRQARQAIRRARREDPDLRVIVTGCAAQTDPQAFARMDEVDLVLGNADKTLPAAWATTR HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHCCCEEEECCCCCCCCHHHHHHH AALDFGIGAEQKVRVQDISAVRAATPHLADRFEGHTRAFVEVQNGCDHRCTFCIIPFGRG HHHHHCCCCCCEEEHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCC PSRSVPMGAVVDQVRRLVANGHREVVLTGVDLTAYGADLPGAPTLGRLVRSVLTGVPDLP CCCCCCHHHHHHHHHHHHHCCCCEEEEEECEEEEECCCCCCCCHHHHHHHHHHHCCCCCC RLRLSSIDAVEADDELMRALAEEERLMPHLHLSLQAGDDLILKRMKRRHSRAQALDFISA CHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH LRRARPDVVLGADIIAGFPTETEEQARATRAFLDEAGLAFVHVFPFSARPGTAAARMPQL HHHCCCCEEECHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHCCCC PAGVVAERARRLRETAADLLRRHLASEVGRRRQVLVEAGGRGHTEHFTPVRLAWPAERGS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEEECCCCCCC LAALRIAGHDGARLIAA EEEEEEECCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9823893 [H]