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The map label for this gene is dapF [H]

Identifier: 154244368

GI number: 154244368

Start: 441545

End: 442417

Strand: Direct

Name: dapF [H]

Synonym: Xaut_0411

Alternate gene names: 154244368

Gene position: 441545-442417 (Clockwise)

Preceding gene: 154244363

Following gene: 154244369

Centisome position: 8.32

GC content: 71.48

Gene sequence:

>873_bases
GTGGCTCGACCCGCCGTGAACCCGCTCGCTAACCGCCCCTTCGTCAAGATGAACGGCCTCGGCAACGAGATCCTCGTGCT
GGACCTGCGCGCCGACCCCGTGGAGGTGCCCGCCGCCGCGGCGCGCGCGCTGGCACGCCCCTCCGTGCTGCCGTTCGACC
AGGCGATGGTGCTCTATCCGCCCCGGCGCGAGGGCACGGCGGCCTTCGTGCGCATCCTGAATTCCGATGGGTCTTTTTCC
GCCGCCTGTGGCAATGGCACCCGCTGCATCGCCGCGCTGGAGGCTGAGCGCACCGGCGCCCCCCATGCCCTGTTCGAGAG
CGAGGCCGGCCTTCTGGACTGCCTCGTGCGCCCGGACGGGCAGGTGGAGGTGGACATGGGCGCGCCGCGCTTCGACTGGC
GCGACATCCCGCTCGCCCGTGACGTTGCGGAGACGGCGCAGGTGATCGTCCCGGGCTTCGAGGCGCTGGGGCCGACGAGC
CTTGTCAGCATGGGCAATCCCCACGCCGTCTTCTTCGTGCCCGACGCGAATGCGGTGGATGTGGAGAAGCTCGGCGCCGC
GCTGGAACATCATCCGCTGTTTCCTGAGCGCGCCAACATCTCCTTCGCCAGCCTCACCGCGCCCGACCGGATCCTGCTGC
ATGTGTGGGAGCGGGGTGCCGGACGGACCCGTGCCTGCGGCACCGCCGCCTGCGCCACCGGCGTTTCCGCCGCCCGCACC
GGGCGGACCGGGCGTTCCGTGACCGTGACGCTGCCCGGCGGCGACCTTGAGATTTCCTGGCGCGAAGCCGACGGCCACGT
GCTGATGACCGGCCCGGTGGAGCACGAGTTCTCCGGCACTCTCTCCCCGGCCATGCTGGAGGAGGCCGCCTGA

Upstream 100 bases:

>100_bases
GCGGATCGGGGCCATATAGGACGGCAGTTTCAACCCGAGTGGGTCACCCGATACGATTGGCTAACCTTCTGTATCGAGTG
ACCCGCTCGATCCATGCTTT

Downstream 100 bases:

>100_bases
TGGCGGCTTCTTCGGTTCCGGCCGCTTCCTCGGCGCCCGCAGCGCCGGGCACGGCCGTGCGTGTCGTCTCCTTCGGCTGC
CGGCTCAATGCGCTGGAAGG

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MARPAVNPLANRPFVKMNGLGNEILVLDLRADPVEVPAAAARALARPSVLPFDQAMVLYPPRREGTAAFVRILNSDGSFS
AACGNGTRCIAALEAERTGAPHALFESEAGLLDCLVRPDGQVEVDMGAPRFDWRDIPLARDVAETAQVIVPGFEALGPTS
LVSMGNPHAVFFVPDANAVDVEKLGAALEHHPLFPERANISFASLTAPDRILLHVWERGAGRTRACGTAACATGVSAART
GRTGRSVTVTLPGGDLEISWREADGHVLMTGPVEHEFSGTLSPAMLEEAA

Sequences:

>Translated_290_residues
MARPAVNPLANRPFVKMNGLGNEILVLDLRADPVEVPAAAARALARPSVLPFDQAMVLYPPRREGTAAFVRILNSDGSFS
AACGNGTRCIAALEAERTGAPHALFESEAGLLDCLVRPDGQVEVDMGAPRFDWRDIPLARDVAETAQVIVPGFEALGPTS
LVSMGNPHAVFFVPDANAVDVEKLGAALEHHPLFPERANISFASLTAPDRILLHVWERGAGRTRACGTAACATGVSAART
GRTGRSVTVTLPGGDLEISWREADGHVLMTGPVEHEFSGTLSPAMLEEAA
>Mature_289_residues
ARPAVNPLANRPFVKMNGLGNEILVLDLRADPVEVPAAAARALARPSVLPFDQAMVLYPPRREGTAAFVRILNSDGSFSA
ACGNGTRCIAALEAERTGAPHALFESEAGLLDCLVRPDGQVEVDMGAPRFDWRDIPLARDVAETAQVIVPGFEALGPTSL
VSMGNPHAVFFVPDANAVDVEKLGAALEHHPLFPERANISFASLTAPDRILLHVWERGAGRTRACGTAACATGVSAARTG
RTGRSVTVTLPGGDLEISWREADGHVLMTGPVEHEFSGTLSPAMLEEAA

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=271, Percent_Identity=38.0073800738007, Blast_Score=167, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 30615; Mature: 30484

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARPAVNPLANRPFVKMNGLGNEILVLDLRADPVEVPAAAARALARPSVLPFDQAMVLYP
CCCCCCCHHCCCCEEEECCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCEEEEEC
PRREGTAAFVRILNSDGSFSAACGNGTRCIAALEAERTGAPHALFESEAGLLDCLVRPDG
CCCCCCEEEEEEECCCCCEEEECCCCCEEEEEEECCCCCCCHHHHCCCCCEEEEEECCCC
QVEVDMGAPRFDWRDIPLARDVAETAQVIVPGFEALGPTSLVSMGNPHAVFFVPDANAVD
CEEEECCCCCCCCCCCCCHHHHHHHHHEEECCHHHCCCHHHHCCCCCEEEEEECCCCCCC
VEKLGAALEHHPLFPERANISFASLTAPDRILLHVWERGAGRTRACGTAACATGVSAART
HHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCHHHHHCCCHHHHC
GRTGRSVTVTLPGGDLEISWREADGHVLMTGPVEHEFSGTLSPAMLEEAA
CCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCHHHHHHCC
>Mature Secondary Structure 
ARPAVNPLANRPFVKMNGLGNEILVLDLRADPVEVPAAAARALARPSVLPFDQAMVLYP
CCCCCCHHCCCCEEEECCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCEEEEEC
PRREGTAAFVRILNSDGSFSAACGNGTRCIAALEAERTGAPHALFESEAGLLDCLVRPDG
CCCCCCEEEEEEECCCCCEEEECCCCCEEEEEEECCCCCCCHHHHCCCCCEEEEEECCCC
QVEVDMGAPRFDWRDIPLARDVAETAQVIVPGFEALGPTSLVSMGNPHAVFFVPDANAVD
CEEEECCCCCCCCCCCCCHHHHHHHHHEEECCHHHCCCHHHHCCCCCEEEEEECCCCCCC
VEKLGAALEHHPLFPERANISFASLTAPDRILLHVWERGAGRTRACGTAACATGVSAART
HHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCHHHHHCCCHHHHC
GRTGRSVTVTLPGGDLEISWREADGHVLMTGPVEHEFSGTLSPAMLEEAA
CCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA