Definition Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession NC_009441
Length 6,096,872

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The map label for this gene is 146299799

Identifier: 146299799

GI number: 146299799

Start: 2400248

End: 2401732

Strand: Direct

Name: 146299799

Synonym: Fjoh_2040

Alternate gene names: NA

Gene position: 2400248-2401732 (Clockwise)

Preceding gene: 146299798

Following gene: 146299800

Centisome position: 39.37

GC content: 35.76

Gene sequence:

>1485_bases
ATGAAAAGAGGGATATTTATAATCGCATTATTATTTTCCGTTCAAATGTTTTCGCAGGCCATTTATGAAGATGAGCGATA
TGTACCGGAAACAGATCCGGCAGTGTTGAAAAACTTAGACGAGTGGCAGGGCAAAAAATTTGGTCTGTTAATGCACTGGG
GAACTTACAGCCAATGGGGAATTGTAGAATCTTGGTCTATCTGTCCAGAAGATTACGGATGGTGTGAACGTAAAAAAGGA
AGCAATCCGTCTAATTATAATGATTATATTAAAGATTACGAAGGATTAAGAAAAACATTTAATCCTGTAAAATTTAATCC
GGAAAAATGGGCAAAAGCAGCTAAATATGCCGGAATGAAATACATGGTTTTTACAACAAAACACCATGACGGATTTAATA
TGTATGATACTAAATATTCTGATTACAAAATCACGAGCAAAGATGTTCCTTTTCATACCAACCCAAAAGCAGATGTTTTA
AAAGAAATTTTCAACTCGTTTAGAGGAGAAGGTATTTCAACAGGAGCTTATTTCTCTAAACCAGACTGGCATAATGAAAA
CTACTGGGATCCATACTTTCCTCCTTTCGACAGAAACGTAAACTACGATCCGTCATTATATCCAGAAAAATGGCAGAAAT
ATGTTGATTTCACTCACAACCAAATCTTAGAGATCTTAACAAACTACGGTAAAGTTGATATTTTATGGTTAGATGGAGGA
TGGGTTAGAAAAAGAGACCAGGTTAACATCAAAGAAAACTACGACGAGAAATTTACTGAAAACGAATCTAAAAACGGTTT
CATCAAACACAGAGTTGTAGATCAGGATCCTAAAATGGACGAATTAGTTGTAAAAGCGCGTCAAAAACAACCAGGTTTAA
TCGTGGTGGATAGAGCGGTTCACGGTAAAAACCAAAACTATTTAACTCCAGAAGGACGTGTTCCTGCAAAAACATTGCCT
TATCCTTGGGAATCTTGTATTCCAGCCGGCGGTGGATGGTCATATTCTCCAGGAGCTGAATACATGACAGGAAGACAAGG
TATTCACATGTTGGTTGATATTGTAGCAAAAGGCGGAAACTTGTTATTAAACATTGCGCCAAGTCCGGAAGGAGAATGGG
ATAAAGGAGCTTACGATTTATTACAGGCTTATGGTGACTGGATGAAAGTAAACAGCACAGCGATTTACAACACAAAACCA
ATCGAACCTTATAAAGAAGAAAATATTTGCTTTACACAAAATAAAACAGGAAATGTATTTGCATTTTATTTAGCTAAAGA
AGGAGAAAATAAAATTCCTGCAGAAGTTACTGTAAAATCGATCAGCCCGAAAAAAGGAACAAAAATTACGATGTTAGGTT
CTAAAACTTCTTTAAAATGGACAAAAGAAGGAAACGGATTTAAAGTAATTATTCCAGAAAGCTTAAGAAATAATCTTCCT
GCAAAAGAAGCGTGGACTTTAAAAATAGAAGCGATCAACAGATAA

Upstream 100 bases:

>100_bases
TTTAACAAAATTGAGTAAGGCAAGGACGCTTTGTCTCAACATGTTAAATGTTGATTTTACAATTAAAAAAAACAAAAACA
AAACCTAAAATAGAATAAAA

Downstream 100 bases:

>100_bases
AAATGAAACCTATGGTTTTAAATACAAACAAATTTAAAACAGCATGTATTTTATACATGCTGTTTTTTAGCATCATGATT
TTTGCGCAGCAACCTGCCGA

Product: alpha-L-fucosidase

Products: NA

Alternate protein names: Glycoside Hydrolase Family; Glycosyl Hydrolase; Exported Alpha-L-Fucosidase Protein; Fucosidase; Glycoside Hydrolase Family Alpha-L-Fucosidase; Alpha-L-Fucosidase Protein; Exporte Hydrolase; Alpha-L-Fucosidase Family Protein; Coagulation Factor 5/8 Type Domain Protein; Glycosyl Hydrolase Alpha-L-Fucosidase; Family; Exported Hydrolase; Calx-Beta Domain-Containing Protein; Alpha-L-Fucosidase Superfamily; Glycoside Hydrolase; Lipoprotein

Number of amino acids: Translated: 494; Mature: 494

Protein sequence:

>494_residues
MKRGIFIIALLFSVQMFSQAIYEDERYVPETDPAVLKNLDEWQGKKFGLLMHWGTYSQWGIVESWSICPEDYGWCERKKG
SNPSNYNDYIKDYEGLRKTFNPVKFNPEKWAKAAKYAGMKYMVFTTKHHDGFNMYDTKYSDYKITSKDVPFHTNPKADVL
KEIFNSFRGEGISTGAYFSKPDWHNENYWDPYFPPFDRNVNYDPSLYPEKWQKYVDFTHNQILEILTNYGKVDILWLDGG
WVRKRDQVNIKENYDEKFTENESKNGFIKHRVVDQDPKMDELVVKARQKQPGLIVVDRAVHGKNQNYLTPEGRVPAKTLP
YPWESCIPAGGGWSYSPGAEYMTGRQGIHMLVDIVAKGGNLLLNIAPSPEGEWDKGAYDLLQAYGDWMKVNSTAIYNTKP
IEPYKEENICFTQNKTGNVFAFYLAKEGENKIPAEVTVKSISPKKGTKITMLGSKTSLKWTKEGNGFKVIIPESLRNNLP
AKEAWTLKIEAINR

Sequences:

>Translated_494_residues
MKRGIFIIALLFSVQMFSQAIYEDERYVPETDPAVLKNLDEWQGKKFGLLMHWGTYSQWGIVESWSICPEDYGWCERKKG
SNPSNYNDYIKDYEGLRKTFNPVKFNPEKWAKAAKYAGMKYMVFTTKHHDGFNMYDTKYSDYKITSKDVPFHTNPKADVL
KEIFNSFRGEGISTGAYFSKPDWHNENYWDPYFPPFDRNVNYDPSLYPEKWQKYVDFTHNQILEILTNYGKVDILWLDGG
WVRKRDQVNIKENYDEKFTENESKNGFIKHRVVDQDPKMDELVVKARQKQPGLIVVDRAVHGKNQNYLTPEGRVPAKTLP
YPWESCIPAGGGWSYSPGAEYMTGRQGIHMLVDIVAKGGNLLLNIAPSPEGEWDKGAYDLLQAYGDWMKVNSTAIYNTKP
IEPYKEENICFTQNKTGNVFAFYLAKEGENKIPAEVTVKSISPKKGTKITMLGSKTSLKWTKEGNGFKVIIPESLRNNLP
AKEAWTLKIEAINR
>Mature_494_residues
MKRGIFIIALLFSVQMFSQAIYEDERYVPETDPAVLKNLDEWQGKKFGLLMHWGTYSQWGIVESWSICPEDYGWCERKKG
SNPSNYNDYIKDYEGLRKTFNPVKFNPEKWAKAAKYAGMKYMVFTTKHHDGFNMYDTKYSDYKITSKDVPFHTNPKADVL
KEIFNSFRGEGISTGAYFSKPDWHNENYWDPYFPPFDRNVNYDPSLYPEKWQKYVDFTHNQILEILTNYGKVDILWLDGG
WVRKRDQVNIKENYDEKFTENESKNGFIKHRVVDQDPKMDELVVKARQKQPGLIVVDRAVHGKNQNYLTPEGRVPAKTLP
YPWESCIPAGGGWSYSPGAEYMTGRQGIHMLVDIVAKGGNLLLNIAPSPEGEWDKGAYDLLQAYGDWMKVNSTAIYNTKP
IEPYKEENICFTQNKTGNVFAFYLAKEGENKIPAEVTVKSISPKKGTKITMLGSKTSLKWTKEGNGFKVIIPESLRNNLP
AKEAWTLKIEAINR

Specific function: Unknown

COG id: COG3669

COG function: function code G; Alpha-L-fucosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI119360348, Length=484, Percent_Identity=27.6859504132231, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI40068512, Length=492, Percent_Identity=26.0162601626016, Blast_Score=119, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI71997700, Length=513, Percent_Identity=24.7563352826511, Blast_Score=129, Evalue=3e-30,
Organism=Drosophila melanogaster, GI24662717, Length=530, Percent_Identity=23.2075471698113, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI78706642, Length=530, Percent_Identity=23.2075471698113, Blast_Score=90, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57019; Mature: 57019

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRGIFIIALLFSVQMFSQAIYEDERYVPETDPAVLKNLDEWQGKKFGLLMHWGTYSQWG
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHCCCEEEEEEECCCCCCCC
IVESWSICPEDYGWCERKKGSNPSNYNDYIKDYEGLRKTFNPVKFNPEKWAKAAKYAGMK
CCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEE
YMVFTTKHHDGFNMYDTKYSDYKITSKDVPFHTNPKADVLKEIFNSFRGEGISTGAYFSK
EEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
PDWHNENYWDPYFPPFDRNVNYDPSLYPEKWQKYVDFTHNQILEILTNYGKVDILWLDGG
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
WVRKRDQVNIKENYDEKFTENESKNGFIKHRVVDQDPKMDELVVKARQKQPGLIVVDRAV
EECCCCCCCCHHCCCHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEEE
HGKNQNYLTPEGRVPAKTLPYPWESCIPAGGGWSYSPGAEYMTGRQGIHMLVDIVAKGGN
CCCCCCEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCC
LLLNIAPSPEGEWDKGAYDLLQAYGDWMKVNSTAIYNTKPIEPYKEENICFTQNKTGNVF
EEEEECCCCCCCCCCHHHHHHHHHCCCEEECCEEEECCCCCCCCCCCCEEEECCCCCCEE
AFYLAKEGENKIPAEVTVKSISPKKGTKITMLGSKTSLKWTKEGNGFKVIIPESLRNNLP
EEEEEECCCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCCCEEEEECHHHHCCCC
AKEAWTLKIEAINR
CCCEEEEEEEEECC
>Mature Secondary Structure
MKRGIFIIALLFSVQMFSQAIYEDERYVPETDPAVLKNLDEWQGKKFGLLMHWGTYSQWG
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHCCCEEEEEEECCCCCCCC
IVESWSICPEDYGWCERKKGSNPSNYNDYIKDYEGLRKTFNPVKFNPEKWAKAAKYAGMK
CCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEE
YMVFTTKHHDGFNMYDTKYSDYKITSKDVPFHTNPKADVLKEIFNSFRGEGISTGAYFSK
EEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
PDWHNENYWDPYFPPFDRNVNYDPSLYPEKWQKYVDFTHNQILEILTNYGKVDILWLDGG
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
WVRKRDQVNIKENYDEKFTENESKNGFIKHRVVDQDPKMDELVVKARQKQPGLIVVDRAV
EECCCCCCCCHHCCCHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEEE
HGKNQNYLTPEGRVPAKTLPYPWESCIPAGGGWSYSPGAEYMTGRQGIHMLVDIVAKGGN
CCCCCCEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCC
LLLNIAPSPEGEWDKGAYDLLQAYGDWMKVNSTAIYNTKPIEPYKEENICFTQNKTGNVF
EEEEECCCCCCCCCCHHHHHHHHHCCCEEECCEEEECCCCCCCCCCCCEEEECCCCCCEE
AFYLAKEGENKIPAEVTVKSISPKKGTKITMLGSKTSLKWTKEGNGFKVIIPESLRNNLP
EEEEEECCCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCCCEEEEECHHHHCCCC
AKEAWTLKIEAINR
CCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA