| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is yccK [H]
Identifier: 126698140
GI number: 126698140
Start: 668172
End: 669167
Strand: Direct
Name: yccK [H]
Synonym: CD0561
Alternate gene names: 126698140
Gene position: 668172-669167 (Clockwise)
Preceding gene: 126698139
Following gene: 126698142
Centisome position: 15.57
GC content: 31.02
Gene sequence:
>996_bases ATGAGAAATTTAGGCAATACTAACATGAAAATAAAGAGAGTTGGCTTTGGGGGCATTCCAATACAAAGGATTACTCAAGA TGATACTAACTTAGTTATAAATGAGTTAGAAAAACAAGGAATAAACTTTATTGACAGTGCAAGAGGGTATACAATAAGTG AGGAAGCAATCGGAATTGCCATTGAAGGAAAAAGAGATAAATTTTTCTTAGCTACTAAAAGTATGTCCAGAGATTATGAT TCAATGAAGAGAGATGTTGAAATAAGTTTAAATAATTTTAAAACTGATTTTATAGATTTATATCAATTCCATAATGTTAA AGAAGAGGAGTATGATAATCTTTTTAAAGATAAAATGGCTTATAGTGCCCTTTTAGAGGCAAAGGAGCAAGGTAAGATAA AACATATTGGTATAACTAGTCACAATTTAAATACTATAGAAAAAGCTATAGAAGATGGAAAATTTGACACTATACAATTC CCTTACAATATAGTTGAAGGACAAGCAGATGAAGTGTTTAAAAAAGCTCATGAAAAAGGAATTGGGATAATAGTAATGAA ACCTTTAGCTGGAGGTGCTTTAGACAATGCAACACTGGCTATTAAATATATACTATCTAAAGATTACATAGATGTAGTTA TACCAGGTATGGAGAGTGTTGAACAGGTTAGACAAAATGTCGCTGTACTTGAAAATCTTGTGCTAGATGAAAAAGATAAT AAGGAAATTGAAGAAATAAGAAATTCTTTAGGTAAAAAATTCTGTAGAAGATGCGAATATTGTATGCCTTGTGCTGTAGG AATAAATATACCATTGAGTTTTTTATGTGAAGGTTATTATACTAGATATGGATTAAAAGAGTGGGCTAAAGAAAAATATG AGGTTATGGATGTTAAACCTACTGAGTGTATTGACTGTGGGCTTTGCGAGAGTAGATGTCCATATGAACTTCCTATAAGA GAAATGCTTAAGACTGTTGTTGAAAAGCTAGGATAG
Upstream 100 bases:
>100_bases TATGTAAATATATTGCAAAGATTCTCATAATTTGTTGTATAATTAAAGGTGACATATTTATATTATATAAAAAATTATTA AAAGTTAGGTGGGGAAAGAT
Downstream 100 bases:
>100_bases ATTTTATTTATTGAAATCGGTGTATTAAATTTACTCCGATTTCTTTTTATTAGATGTGGTCTTATATACAAATATTAAAT TTACATAGTTATAGCTATTA
Product: aldo/keto reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 331
Protein sequence:
>331_residues MRNLGNTNMKIKRVGFGGIPIQRITQDDTNLVINELEKQGINFIDSARGYTISEEAIGIAIEGKRDKFFLATKSMSRDYD SMKRDVEISLNNFKTDFIDLYQFHNVKEEEYDNLFKDKMAYSALLEAKEQGKIKHIGITSHNLNTIEKAIEDGKFDTIQF PYNIVEGQADEVFKKAHEKGIGIIVMKPLAGGALDNATLAIKYILSKDYIDVVIPGMESVEQVRQNVAVLENLVLDEKDN KEIEEIRNSLGKKFCRRCEYCMPCAVGINIPLSFLCEGYYTRYGLKEWAKEKYEVMDVKPTECIDCGLCESRCPYELPIR EMLKTVVEKLG
Sequences:
>Translated_331_residues MRNLGNTNMKIKRVGFGGIPIQRITQDDTNLVINELEKQGINFIDSARGYTISEEAIGIAIEGKRDKFFLATKSMSRDYD SMKRDVEISLNNFKTDFIDLYQFHNVKEEEYDNLFKDKMAYSALLEAKEQGKIKHIGITSHNLNTIEKAIEDGKFDTIQF PYNIVEGQADEVFKKAHEKGIGIIVMKPLAGGALDNATLAIKYILSKDYIDVVIPGMESVEQVRQNVAVLENLVLDEKDN KEIEEIRNSLGKKFCRRCEYCMPCAVGINIPLSFLCEGYYTRYGLKEWAKEKYEVMDVKPTECIDCGLCESRCPYELPIR EMLKTVVEKLG >Mature_331_residues MRNLGNTNMKIKRVGFGGIPIQRITQDDTNLVINELEKQGINFIDSARGYTISEEAIGIAIEGKRDKFFLATKSMSRDYD SMKRDVEISLNNFKTDFIDLYQFHNVKEEEYDNLFKDKMAYSALLEAKEQGKIKHIGITSHNLNTIEKAIEDGKFDTIQF PYNIVEGQADEVFKKAHEKGIGIIVMKPLAGGALDNATLAIKYILSKDYIDVVIPGMESVEQVRQNVAVLENLVLDEKDN KEIEEIRNSLGKKFCRRCEYCMPCAVGINIPLSFLCEGYYTRYGLKEWAKEKYEVMDVKPTECIDCGLCESRCPYELPIR EMLKTVVEKLG
Specific function: Unknown
COG id: COG1453
COG function: function code R; Predicted oxidoreductases of the aldo/keto reductase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldo/keto reductase 2 family [H]
Homologues:
Organism=Escherichia coli, GI1788070, Length=322, Percent_Identity=24.5341614906832, Blast_Score=72, Evalue=6e-14, Organism=Drosophila melanogaster, GI24646159, Length=219, Percent_Identity=25.5707762557078, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24646155, Length=217, Percent_Identity=26.2672811059908, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001395 - InterPro: IPR020471 - InterPro: IPR023210 [H]
Pfam domain/function: PF00248 Aldo_ket_red [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 37766; Mature: 37766
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNLGNTNMKIKRVGFGGIPIQRITQDDTNLVINELEKQGINFIDSARGYTISEEAIGIA CCCCCCCCEEEEEECCCCCCHHHHCCCCHHHHHHHHHHCCCCHHHCCCCCEECCCCEEEE IEGKRDKFFLATKSMSRDYDSMKRDVEISLNNFKTDFIDLYQFHNVKEEEYDNLFKDKMA EECCCCEEEEEECHHHCCHHHHHCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHH YSALLEAKEQGKIKHIGITSHNLNTIEKAIEDGKFDTIQFPYNIVEGQADEVFKKAHEKG HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHHHCC IGIIVMKPLAGGALDNATLAIKYILSKDYIDVVIPGMESVEQVRQNVAVLENLVLDEKDN CEEEEECCCCCCCCCCHHEEEEEHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCC KEIEEIRNSLGKKFCRRCEYCMPCAVGINIPLSFLCEGYYTRYGLKEWAKEKYEVMDVKP HHHHHHHHHHHHHHHHHCCHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCC TECIDCGLCESRCPYELPIREMLKTVVEKLG HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MRNLGNTNMKIKRVGFGGIPIQRITQDDTNLVINELEKQGINFIDSARGYTISEEAIGIA CCCCCCCCEEEEEECCCCCCHHHHCCCCHHHHHHHHHHCCCCHHHCCCCCEECCCCEEEE IEGKRDKFFLATKSMSRDYDSMKRDVEISLNNFKTDFIDLYQFHNVKEEEYDNLFKDKMA EECCCCEEEEEECHHHCCHHHHHCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHH YSALLEAKEQGKIKHIGITSHNLNTIEKAIEDGKFDTIQFPYNIVEGQADEVFKKAHEKG HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHHHCC IGIIVMKPLAGGALDNATLAIKYILSKDYIDVVIPGMESVEQVRQNVAVLENLVLDEKDN CEEEEECCCCCCCCCCHHEEEEEHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCC KEIEEIRNSLGKKFCRRCEYCMPCAVGINIPLSFLCEGYYTRYGLKEWAKEKYEVMDVKP HHHHHHHHHHHHHHHHHCCHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCC TECIDCGLCESRCPYELPIREMLKTVVEKLG HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9274031; 9384377; 9106203 [H]