| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is 126174175
Identifier: 126174175
GI number: 126174175
Start: 2266609
End: 2267100
Strand: Direct
Name: 126174175
Synonym: Sbal_1951
Alternate gene names: NA
Gene position: 2266609-2267100 (Clockwise)
Preceding gene: 126174174
Following gene: 126174176
Centisome position: 44.21
GC content: 50.41
Gene sequence:
>492_bases ATGTCCGCTAAGGAGTCAGTAATGAAACAGCAAGAATTTGAAGTCCTTGAACATTTTCTGCAACGGGGCGGCTCACTGCG TATGTTGGCTGATGTCGAGCAAAGTGACTTGAATGTGCTGTACCAATACGCGTTGCAGTTAATGGCCTGCCGAGACCAAC AGGGGGCGAAGCGGATCTTTTACCTCTTGATGCGCATAGATCAATGGAATTACGACTACTGCTTTTCTCTAGGGATATGC TGCCAGCAGTTACACGAACATGAAGAGGCCATTTTCTGTTTGGGCCGGGCAGGGATGATCAAAGTCGATAATCCTTTACC CGCTTACCATGCTGGTTTGAGCTACTTGGCTTTGGGCAACCACGACTATGCCAAGAGAAGCTTTAACGCCAGTCTACGTT GGTGTGAAGGCCACCCAGAGAGCACTGGGATCGCCGCCAGAGCACAGCGCGGACTGGCCACACTCGCGAAGGAGAATTCC CATGTCAATTAA
Upstream 100 bases:
>100_bases CTGCAACTGCAAAAAATGATGCAGACCTATAACGTGACCGTCAGTTTACTCAATAGCATGCAGACCATGTTGGCCGAGAT GAATAAATCTATCGCCCAAA
Downstream 100 bases:
>100_bases CAGTGTATTGGAAAGAAGTCCTGAGAATGTGTCGGCCAATTATGTTACCGCTCAGGCGCATGCTGTTAGCAAAGCAAGTT TGCCCGACTGGTCCATGCCT
Product: type III secretion low calcium response chaperone LcrH/SycD
Products: NA
Alternate protein names: Type III Secretion System Chaperone SycD Family; Type III Secretion Low Calcium Response Chaperone; Type III Secretion System CesD Protein; Type III Secretion Chaperone
Number of amino acids: Translated: 163; Mature: 162
Protein sequence:
>163_residues MSAKESVMKQQEFEVLEHFLQRGGSLRMLADVEQSDLNVLYQYALQLMACRDQQGAKRIFYLLMRIDQWNYDYCFSLGIC CQQLHEHEEAIFCLGRAGMIKVDNPLPAYHAGLSYLALGNHDYAKRSFNASLRWCEGHPESTGIAARAQRGLATLAKENS HVN
Sequences:
>Translated_163_residues MSAKESVMKQQEFEVLEHFLQRGGSLRMLADVEQSDLNVLYQYALQLMACRDQQGAKRIFYLLMRIDQWNYDYCFSLGIC CQQLHEHEEAIFCLGRAGMIKVDNPLPAYHAGLSYLALGNHDYAKRSFNASLRWCEGHPESTGIAARAQRGLATLAKENS HVN >Mature_162_residues SAKESVMKQQEFEVLEHFLQRGGSLRMLADVEQSDLNVLYQYALQLMACRDQQGAKRIFYLLMRIDQWNYDYCFSLGICC QQLHEHEEAIFCLGRAGMIKVDNPLPAYHAGLSYLALGNHDYAKRSFNASLRWCEGHPESTGIAARAQRGLATLAKENSH VN
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18575; Mature: 18444
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 3.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAKESVMKQQEFEVLEHFLQRGGSLRMLADVEQSDLNVLYQYALQLMACRDQQGAKRIF CCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHH YLLMRIDQWNYDYCFSLGICCQQLHEHEEAIFCLGRAGMIKVDNPLPAYHAGLSYLALGN HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECCCCCHHHCCCCEEEECC HDYAKRSFNASLRWCEGHPESTGIAARAQRGLATLAKENSHVN CHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SAKESVMKQQEFEVLEHFLQRGGSLRMLADVEQSDLNVLYQYALQLMACRDQQGAKRIF CHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHH YLLMRIDQWNYDYCFSLGICCQQLHEHEEAIFCLGRAGMIKVDNPLPAYHAGLSYLALGN HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECCCCCHHHCCCCEEEECC HDYAKRSFNASLRWCEGHPESTGIAARAQRGLATLAKENSHVN CHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA