| Definition | Prochlorococcus marinus str. AS9601, complete genome. |
|---|---|
| Accession | NC_008816 |
| Length | 1,669,886 |
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The map label for this gene is 123967705
Identifier: 123967705
GI number: 123967705
Start: 158375
End: 159196
Strand: Direct
Name: 123967705
Synonym: A9601_01681
Alternate gene names: NA
Gene position: 158375-159196 (Clockwise)
Preceding gene: 123967704
Following gene: 123967706
Centisome position: 9.48
GC content: 33.58
Gene sequence:
>822_bases TTGTTGATTAAGTTTCTTCAAGATGCCGCAGGTAAAGGTGAGCTTGATCCATGGGATATTGATGTAATAAGTGTAATTGA TAGTTTTTTAGAGCAATACACTTATACTTTTAATCAATCTTCAAATAGTCAAATCTCATATCAGAAGGATTTAGCCGAGA CCAGCGAAGCATTTTTTGCGGCTTCCGTACTAGTTAATCTTAAGGCTGAGGTTTTGGAAGCTGATGTTTTTAAAGAGAAT TCTTCAGACTTTGAAGATGAATTTGATTTGGATGATCAAGATTGGATAGATAAAGAATTTGACGTCCCAAAATATCCTGA AAAATATCTAAGAAGAAGATCAATTGCCCAACCAATTCTTAAACGTACAACAACGTTGGGAGAACTTGTAAGTCAGTTAG AGTCCATAGCAGAAGTTATAGAAACCCAAGATCTTCTGCTTATGAAGAGAAAAAGAAATAAAAAATATTCTGATAAGGCT TTAATTTCTCAAGTAAAATCTTTAGCACATCGCGAGAAACTTCCAGAAACAACTAAAGCATTGGGGAAATTTATCGACGG ATGGGAAAAAGCATTACAATGGACAGACTTTGAATATTTAGTCAAAAAATGGCAAACAGTTGTAAAAAATGACTTAGATA AAGATCGTTTGGGAGTTTTTTGGGCTTTGTTATTTTTATCATCTGAAAACAAAATTGAAATCAAACAAATTAATTCCTTG TATGGTCCAATTCAAATTAAAAGAATAATACCTGATGGTGGCTTAGCTCAACTGCCTATAGAAAATCTTGAGGTAAGTAA TGTCTCTTCCTCGGCTGCTTAG
Upstream 100 bases:
>100_bases TTTGGCATTAAATAAATTAAAAGATATCTTGTGAGTAGATTTTATCTATTTTAAAATAACTTATTTCAATCCTATTGATA GGCAACAATTAGGCCCTAGA
Downstream 100 bases:
>100_bases AAGCTTAATAGTAATAACGTATAATTTTAAAAAATGGTTTTGAATTTATGAAGGCAATGATACTTGCGGCAGGTAAAGGT ACACGTGTTCAGCCTATTAC
Product: hypothetical protein
Products: NA
Alternate protein names: Chromosome Segregation And Condensation Protein ScpA; Condensin Subunit ScpA; ScpA/B Protein
Number of amino acids: Translated: 273; Mature: 273
Protein sequence:
>273_residues MLIKFLQDAAGKGELDPWDIDVISVIDSFLEQYTYTFNQSSNSQISYQKDLAETSEAFFAASVLVNLKAEVLEADVFKEN SSDFEDEFDLDDQDWIDKEFDVPKYPEKYLRRRSIAQPILKRTTTLGELVSQLESIAEVIETQDLLLMKRKRNKKYSDKA LISQVKSLAHREKLPETTKALGKFIDGWEKALQWTDFEYLVKKWQTVVKNDLDKDRLGVFWALLFLSSENKIEIKQINSL YGPIQIKRIIPDGGLAQLPIENLEVSNVSSSAA
Sequences:
>Translated_273_residues MLIKFLQDAAGKGELDPWDIDVISVIDSFLEQYTYTFNQSSNSQISYQKDLAETSEAFFAASVLVNLKAEVLEADVFKEN SSDFEDEFDLDDQDWIDKEFDVPKYPEKYLRRRSIAQPILKRTTTLGELVSQLESIAEVIETQDLLLMKRKRNKKYSDKA LISQVKSLAHREKLPETTKALGKFIDGWEKALQWTDFEYLVKKWQTVVKNDLDKDRLGVFWALLFLSSENKIEIKQINSL YGPIQIKRIIPDGGLAQLPIENLEVSNVSSSAA >Mature_273_residues MLIKFLQDAAGKGELDPWDIDVISVIDSFLEQYTYTFNQSSNSQISYQKDLAETSEAFFAASVLVNLKAEVLEADVFKEN SSDFEDEFDLDDQDWIDKEFDVPKYPEKYLRRRSIAQPILKRTTTLGELVSQLESIAEVIETQDLLLMKRKRNKKYSDKA LISQVKSLAHREKLPETTKALGKFIDGWEKALQWTDFEYLVKKWQTVVKNDLDKDRLGVFWALLFLSSENKIEIKQINSL YGPIQIKRIIPDGGLAQLPIENLEVSNVSSSAA
Specific function: Unknown
COG id: COG1354
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31327; Mature: 31327
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIKFLQDAAGKGELDPWDIDVISVIDSFLEQYTYTFNQSSNSQISYQKDLAETSEAFFA CHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH ASVLVNLKAEVLEADVFKENSSDFEDEFDLDDQDWIDKEFDVPKYPEKYLRRRSIAQPIL HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHH KRTTTLGELVSQLESIAEVIETQDLLLMKRKRNKKYSDKALISQVKSLAHREKLPETTKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHH LGKFIDGWEKALQWTDFEYLVKKWQTVVKNDLDKDRLGVFWALLFLSSENKIEIKQINSL HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH YGPIQIKRIIPDGGLAQLPIENLEVSNVSSSAA HCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLIKFLQDAAGKGELDPWDIDVISVIDSFLEQYTYTFNQSSNSQISYQKDLAETSEAFFA CHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH ASVLVNLKAEVLEADVFKENSSDFEDEFDLDDQDWIDKEFDVPKYPEKYLRRRSIAQPIL HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHH KRTTTLGELVSQLESIAEVIETQDLLLMKRKRNKKYSDKALISQVKSLAHREKLPETTKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHH LGKFIDGWEKALQWTDFEYLVKKWQTVVKNDLDKDRLGVFWALLFLSSENKIEIKQINSL HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH YGPIQIKRIIPDGGLAQLPIENLEVSNVSSSAA HCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA