Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

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The map label for this gene is 121998586

Identifier: 121998586

GI number: 121998586

Start: 1978679

End: 1981147

Strand: Reverse

Name: 121998586

Synonym: Hhal_1807

Alternate gene names: NA

Gene position: 1981147-1978679 (Counterclockwise)

Preceding gene: 121998587

Following gene: 121998585

Centisome position: 73.97

GC content: 71.04

Gene sequence:

>2469_bases
TTGGCGAACACATCTGACAGCGGACGAAGGGGCGAGCCCGTGCGCAAGGCGATCCGCGGCCTCGCCGGCCTGGCGGGACT
GTCACTGGTCTCAGTGGCAGCCGCGGTGGAGGTCAGCCTCGGGACCATCGAGGGGCGCTCCGAGGCCGGCGAGCCGGTCT
CGGCGCGGATCCCCTTGCGGGACGTTAGCCCCGACGAACTCGCGCGCCTCGATGTCGGGCTAGCCCCGGGCCGAGTCTTC
AATCGGGCCGGGGTCGACCGGATGCCCGAATTGTCGTTGCTCGACTTCGAGCTGGTCGCCTCCGGCGAAGACGCCCCCTA
TATTGCCGTCACCAGTCAGGAGCCCATCGACCAGCCCCTGCTGGATTTCCTGATCCAGGTCAGCTGGCCCGAAGGGGACC
TGGTCCGCGAGTACACCCTGCTCCTTGAACGTCCCACGACCGCTGACGAGGATGCGCCGACCCAAGGGCAGCCCCTGGTT
CGCGAGGGCGAGCCGTTCGAGGAGATCACCCGCGACGGCGAGCGTGAGCGCCGCTCGACGGCCTACGGGCCGGTGGAAGA
GGGGGATACCCTCTGGCGGATCGCCTCGGAGCACCGCCCGGATGACTCCGTCACCGTGGCGCAGACGATGCTGGCCATCC
AGCGGCTCAACCCGCGCGCCTTCGCCGGTGACAACGTCAACGACCTGCTCAGCGGCTGGTGGCTGAAACTGCCCAGTCGC
GAGCAGATCGAGGAGTTGACCGCCGGCGAGGCTCAGGCCATCTATGAGGACCACCTGGACAGCTGGGTACCGCCGGCCGA
GCGCCGGGCGGCCATCGAGGAACTCGACGAGGCGGTGCCGATCCCCGATCTGCCGGATCCGGAGCAGGTGGCAGAGGCAC
CGACCGCCGAGGAGGCCCGGCTGCGGATCCTCGCCCTCGGTGACGAGGAGGGCACCGAAGAGGTCCTGTCACTCCTCGAT
ACCGAGCTGGAGGCCTCGGAGGCCAATGTGCGCCGGCTGCAGGGGGCGCTGGCCGCCCTGCGCGAGGAGCGGGCCAGTCT
CCGCTCGGAGCGCGAAAGCCTCAAGGCGCAGGTGGAAGACCTGAGCCAGCGGGTAGCAGCGCTCGAGCGGCTGGTGGACC
TGGACATGGAGGGGCTGCTGCCGCCGCCGGATGCCGAGCCGACGCCGATCGTGCCGCTGCCCGAGGTGGATGAGCCCCTG
GATCCCCTGCGCGAGGCGGAGCCGGTGCCCACGGAGGCCGATCCGCCAACACCCGAGCGCGAAGAAGAGCCCGAGGAAGA
GGTCGGCTGGGCGCAGTGGTTGTCCGGTGACGGTGATGTCACCGCCGCCGACCTGTGGCGCGACGAGGAGGCACGGCGGC
AGATGCTGATCGCCACCGGAGGAACCCTGCTGGCGCTCGCCGTGGTTGCCGGCTTGCTGCTGCGCCGCCGGCGGCGGCGT
GCGAATACCCAGGAGCCGGAGGGGCTGCGCCTCGATCGCGGTGACCTGGACTTCGATTTCGACCATAGTGCCCGGCGGGA
TGCCCTGGAGCTAGCCGACGAGTACCTGGCGGATAACGATCTGCGTCGGGCCCGGGACGTGCTGGAGCGTGGCATCCATC
GCGAGCCGGCGCGGACCGATCTGCGCCTGCGGCTGCTGGAGGTCCTCTCCCGCATGGGTGAGCGGGAGGCCTTCCTGGCC
CAGGCGCAGGATCTCTACGACCGGACGCGCAGCGATGCCGATCCGGCCTGGCAGGCGGCCGTGGCCCTGGGTGTGGCCTT
CGTACCCGATGCCCCGCTGTTCGCGGGTGCCGCGGCGGCTCGCCCGGCGGCGGAGGACGCGGCCACGGATGCCGAGGTCC
CGGAGGACTCAGCAGGGGAGGCCGAGGCCGGACTCGACACCAAGCCGGATCTGGAGGATCTGGACCTCGGGCTGGACGGC
GGCGACGGCGACGATGCCGGTGCGCAGTCGACCTCTGAGGACGACGACTTCGACCGCCGGCTGGATGCGGCCTTCGACGA
GCAGCCGCAGGAGACGGAGCCGGAGGCCGCGGAGGCGCCCGCCACCGATAACGAGCCGGACGCCACCGAGGAGCCGGAGC
CGGCCATGACGCGTGAGCCGGAGGCGAGCGCCGGCGCGCAGGACGTGGCCGATGAGCTCTTTGGCGGGGATGACGCCGCC
GGCGACGAACTCGACGAGATGGATCTCGACAGCCTGTTCAGCGAGGAAGACGATGACACCCCGGGCGGTCTCGACCTGGA
TGAGGCCGGAGAGGGGCCCGCGGAGGGCGACCTGGAGGCCGAGGCGGAGCAGTCCCTGGGGGTCGGCGAGGGCGATGAGG
CCGATACCAAGCTCGACCTGGCCCGGGCGTACATCGACCTGGGCGACGAGCCGGGGGCCCGCAGCCTGCTGGAGGAGGTC
CTGGAGGAAGGTACCGAGTCGCAGCGCGAGAGTGCCCGGCAGATCCTGGCTGAGCTCAGCGGCGAGTAG

Upstream 100 bases:

>100_bases
GAGGACATCAGCCACGAGCGGGGTCTCGATCTCTGGGTGGTGGCCGATAACGTCCGCAAGGGGGCGGCGCTGAACAGCGT
GCAGATTGCGGAGCTGCTGA

Downstream 100 bases:

>100_bases
GCGGGCAGGCGGTGGCGGAACGAGGGGCAGAGCAACGCATTGCCCTGGTGCTGGAGTACGACGGCACCGGCTTCAGCGGC
TGGCAGCGACAGGACGACGC

Product: hypothetical protein

Products: NA

Alternate protein names: FimV Protein; Tfp Pilus Assembly Protein FimV-Like Protein; FimV N-Terminal Domain Protein; LysM Domain Protein; Motility Protein FimV; Type 4 Pilus Biogenesis; Type IV Pilus Assembly Protein TapV; TPR Repeat-Containing Protein; FimV C-Terminal Domain-Containing Protein; AAA ATPase; Protein Containing Tetratricopeptide Repeats; LysM Domain-Containing Protein; ATPase; Tfp Pilus Assembly Protein FimV-Like; Transmembrane Tfp Pilus Assembly Protein FimV; FimV N-Terminal Domain; FimV N-Terminal Domain-Containing Protein; FimV Type IV Pilus Assembly Protein

Number of amino acids: Translated: 822; Mature: 821

Protein sequence:

>822_residues
MANTSDSGRRGEPVRKAIRGLAGLAGLSLVSVAAAVEVSLGTIEGRSEAGEPVSARIPLRDVSPDELARLDVGLAPGRVF
NRAGVDRMPELSLLDFELVASGEDAPYIAVTSQEPIDQPLLDFLIQVSWPEGDLVREYTLLLERPTTADEDAPTQGQPLV
REGEPFEEITRDGERERRSTAYGPVEEGDTLWRIASEHRPDDSVTVAQTMLAIQRLNPRAFAGDNVNDLLSGWWLKLPSR
EQIEELTAGEAQAIYEDHLDSWVPPAERRAAIEELDEAVPIPDLPDPEQVAEAPTAEEARLRILALGDEEGTEEVLSLLD
TELEASEANVRRLQGALAALREERASLRSERESLKAQVEDLSQRVAALERLVDLDMEGLLPPPDAEPTPIVPLPEVDEPL
DPLREAEPVPTEADPPTPEREEEPEEEVGWAQWLSGDGDVTAADLWRDEEARRQMLIATGGTLLALAVVAGLLLRRRRRR
ANTQEPEGLRLDRGDLDFDFDHSARRDALELADEYLADNDLRRARDVLERGIHREPARTDLRLRLLEVLSRMGEREAFLA
QAQDLYDRTRSDADPAWQAAVALGVAFVPDAPLFAGAAAARPAAEDAATDAEVPEDSAGEAEAGLDTKPDLEDLDLGLDG
GDGDDAGAQSTSEDDDFDRRLDAAFDEQPQETEPEAAEAPATDNEPDATEEPEPAMTREPEASAGAQDVADELFGGDDAA
GDELDEMDLDSLFSEEDDDTPGGLDLDEAGEGPAEGDLEAEAEQSLGVGEGDEADTKLDLARAYIDLGDEPGARSLLEEV
LEEGTESQRESARQILAELSGE

Sequences:

>Translated_822_residues
MANTSDSGRRGEPVRKAIRGLAGLAGLSLVSVAAAVEVSLGTIEGRSEAGEPVSARIPLRDVSPDELARLDVGLAPGRVF
NRAGVDRMPELSLLDFELVASGEDAPYIAVTSQEPIDQPLLDFLIQVSWPEGDLVREYTLLLERPTTADEDAPTQGQPLV
REGEPFEEITRDGERERRSTAYGPVEEGDTLWRIASEHRPDDSVTVAQTMLAIQRLNPRAFAGDNVNDLLSGWWLKLPSR
EQIEELTAGEAQAIYEDHLDSWVPPAERRAAIEELDEAVPIPDLPDPEQVAEAPTAEEARLRILALGDEEGTEEVLSLLD
TELEASEANVRRLQGALAALREERASLRSERESLKAQVEDLSQRVAALERLVDLDMEGLLPPPDAEPTPIVPLPEVDEPL
DPLREAEPVPTEADPPTPEREEEPEEEVGWAQWLSGDGDVTAADLWRDEEARRQMLIATGGTLLALAVVAGLLLRRRRRR
ANTQEPEGLRLDRGDLDFDFDHSARRDALELADEYLADNDLRRARDVLERGIHREPARTDLRLRLLEVLSRMGEREAFLA
QAQDLYDRTRSDADPAWQAAVALGVAFVPDAPLFAGAAAARPAAEDAATDAEVPEDSAGEAEAGLDTKPDLEDLDLGLDG
GDGDDAGAQSTSEDDDFDRRLDAAFDEQPQETEPEAAEAPATDNEPDATEEPEPAMTREPEASAGAQDVADELFGGDDAA
GDELDEMDLDSLFSEEDDDTPGGLDLDEAGEGPAEGDLEAEAEQSLGVGEGDEADTKLDLARAYIDLGDEPGARSLLEEV
LEEGTESQRESARQILAELSGE
>Mature_821_residues
ANTSDSGRRGEPVRKAIRGLAGLAGLSLVSVAAAVEVSLGTIEGRSEAGEPVSARIPLRDVSPDELARLDVGLAPGRVFN
RAGVDRMPELSLLDFELVASGEDAPYIAVTSQEPIDQPLLDFLIQVSWPEGDLVREYTLLLERPTTADEDAPTQGQPLVR
EGEPFEEITRDGERERRSTAYGPVEEGDTLWRIASEHRPDDSVTVAQTMLAIQRLNPRAFAGDNVNDLLSGWWLKLPSRE
QIEELTAGEAQAIYEDHLDSWVPPAERRAAIEELDEAVPIPDLPDPEQVAEAPTAEEARLRILALGDEEGTEEVLSLLDT
ELEASEANVRRLQGALAALREERASLRSERESLKAQVEDLSQRVAALERLVDLDMEGLLPPPDAEPTPIVPLPEVDEPLD
PLREAEPVPTEADPPTPEREEEPEEEVGWAQWLSGDGDVTAADLWRDEEARRQMLIATGGTLLALAVVAGLLLRRRRRRA
NTQEPEGLRLDRGDLDFDFDHSARRDALELADEYLADNDLRRARDVLERGIHREPARTDLRLRLLEVLSRMGEREAFLAQ
AQDLYDRTRSDADPAWQAAVALGVAFVPDAPLFAGAAAARPAAEDAATDAEVPEDSAGEAEAGLDTKPDLEDLDLGLDGG
DGDDAGAQSTSEDDDFDRRLDAAFDEQPQETEPEAAEAPATDNEPDATEEPEPAMTREPEASAGAQDVADELFGGDDAAG
DELDEMDLDSLFSEEDDDTPGGLDLDEAGEGPAEGDLEAEAEQSLGVGEGDEADTKLDLARAYIDLGDEPGARSLLEEVL
EEGTESQRESARQILAELSGE

Specific function: Unknown

COG id: COG3170

COG function: function code NU; Tfp pilus assembly protein FimV

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 89227; Mature: 89096

Theoretical pI: Translated: 3.81; Mature: 3.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANTSDSGRRGEPVRKAIRGLAGLAGLSLVSVAAAVEVSLGTIEGRSEAGEPVSARIPLR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCC
DVSPDELARLDVGLAPGRVFNRAGVDRMPELSLLDFELVASGEDAPYIAVTSQEPIDQPL
CCCHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHCCCCEEECCCCCCEEEECCCCCCHHHH
LDFLIQVSWPEGDLVREYTLLLERPTTADEDAPTQGQPLVREGEPFEEITRDGERERRST
HHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHC
AYGPVEEGDTLWRIASEHRPDDSVTVAQTMLAIQRLNPRAFAGDNVNDLLSGWWLKLPSR
CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCH
EQIEELTAGEAQAIYEDHLDSWVPPAERRAAIEELDEAVPIPDLPDPEQVAEAPTAEEAR
HHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCC
LRILALGDEEGTEEVLSLLDTELEASEANVRRLQGALAALREERASLRSERESLKAQVED
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSQRVAALERLVDLDMEGLLPPPDAEPTPIVPLPEVDEPLDPLREAEPVPTEADPPTPER
HHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
EEEPEEEVGWAQWLSGDGDVTAADLWRDEEARRQMLIATGGTLLALAVVAGLLLRRRRRR
CCCCHHHHHHHHHHCCCCCEEHHHHHCCHHHHHHEEHCCCHHHHHHHHHHHHHHHHHHHH
ANTQEPEGLRLDRGDLDFDFDHSARRDALELADEYLADNDLRRARDVLERGIHREPARTD
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHH
LRLRLLEVLSRMGEREAFLAQAQDLYDRTRSDADPAWQAAVALGVAFVPDAPLFAGAAAA
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHCHHHC
RPAAEDAATDAEVPEDSAGEAEAGLDTKPDLEDLDLGLDGGDGDDAGAQSTSEDDDFDRR
CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
LDAAFDEQPQETEPEAAEAPATDNEPDATEEPEPAMTREPEASAGAQDVADELFGGDDAA
HHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
GDELDEMDLDSLFSEEDDDTPGGLDLDEAGEGPAEGDLEAEAEQSLGVGEGDEADTKLDL
CCCHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHH
ARAYIDLGDEPGARSLLEEVLEEGTESQRESARQILAELSGE
HHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ANTSDSGRRGEPVRKAIRGLAGLAGLSLVSVAAAVEVSLGTIEGRSEAGEPVSARIPLR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCC
DVSPDELARLDVGLAPGRVFNRAGVDRMPELSLLDFELVASGEDAPYIAVTSQEPIDQPL
CCCHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHCCCCEEECCCCCCEEEECCCCCCHHHH
LDFLIQVSWPEGDLVREYTLLLERPTTADEDAPTQGQPLVREGEPFEEITRDGERERRST
HHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHC
AYGPVEEGDTLWRIASEHRPDDSVTVAQTMLAIQRLNPRAFAGDNVNDLLSGWWLKLPSR
CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCH
EQIEELTAGEAQAIYEDHLDSWVPPAERRAAIEELDEAVPIPDLPDPEQVAEAPTAEEAR
HHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCC
LRILALGDEEGTEEVLSLLDTELEASEANVRRLQGALAALREERASLRSERESLKAQVED
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSQRVAALERLVDLDMEGLLPPPDAEPTPIVPLPEVDEPLDPLREAEPVPTEADPPTPER
HHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
EEEPEEEVGWAQWLSGDGDVTAADLWRDEEARRQMLIATGGTLLALAVVAGLLLRRRRRR
CCCCHHHHHHHHHHCCCCCEEHHHHHCCHHHHHHEEHCCCHHHHHHHHHHHHHHHHHHHH
ANTQEPEGLRLDRGDLDFDFDHSARRDALELADEYLADNDLRRARDVLERGIHREPARTD
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHH
LRLRLLEVLSRMGEREAFLAQAQDLYDRTRSDADPAWQAAVALGVAFVPDAPLFAGAAAA
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHCHHHC
RPAAEDAATDAEVPEDSAGEAEAGLDTKPDLEDLDLGLDGGDGDDAGAQSTSEDDDFDRR
CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
LDAAFDEQPQETEPEAAEAPATDNEPDATEEPEPAMTREPEASAGAQDVADELFGGDDAA
HHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
GDELDEMDLDSLFSEEDDDTPGGLDLDEAGEGPAEGDLEAEAEQSLGVGEGDEADTKLDL
CCCHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHH
ARAYIDLGDEPGARSLLEEVLEEGTESQRESARQILAELSGE
HHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA