Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

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The map label for this gene is 121998301

Identifier: 121998301

GI number: 121998301

Start: 1646195

End: 1647685

Strand: Reverse

Name: 121998301

Synonym: Hhal_1519

Alternate gene names: NA

Gene position: 1647685-1646195 (Counterclockwise)

Preceding gene: 121998302

Following gene: 121998300

Centisome position: 61.52

GC content: 64.92

Gene sequence:

>1491_bases
ATGGCCGTGTCGCCGAGGGTAGCTAGGGCGCGGGCGCTGCCGGGCGCCGCGGCCGCCTTGGGGCTTCTGCTGATTTCCGG
GGCCAGTATCGCTTCGACACAGTGGACCTTCACCCCGCGCATGACCGTTGGTCAGGAGTGGACCGACAACGCCGATTTTT
CCCCGCGGGGTGCAGAGGAGAGTGACCTGGTTACGCTCTTGCGGCCGAGCTTGACCCTGAGTGGAGAGGGCGCGCGTGCC
GAACTCGACCTCAATTACTCGTGGGACAACCGGCTTTACTGGCGCGATAGCGACCGGGACCGAAGTACCCACAATCTGCG
CGGAAGTGGCAACGCCGAGTTGGTGCGGGAGTCGATCTTCGTGGAGGGCTCCATCCGCCGCAGTGTGCGGGCGGAATCGA
TCTTCGATCCGGTAACCGCGCGGGATCAGCAGGAGACGACCCGCTACCGCATCAGCCCTTACTGGGTGTGGCGGCAGGGT
CGCTTCTCGGAGCAAGAGGTGCGTTACGTCTTCGACGAGGCCCGTTACCACCGATCGGATCGCCAGCCGCAACAGGTGCA
TCGCGCCCAATACCAGCTGGATAGCGGCCCGCAGTTCGGTCGCACCTTCTGGCAGTTCCGCTCCGAACGCAACTGGGATC
GCTTCGACGATCCGGAGCGCGCCGAGATTGATCGTTTCTCCAACCAGGCCACCTTGGGGTACCGGTTCGGCCGGTCGTTG
CGCCTGAGCCTATCCGGATCGGATGGCTGGATTCGGGTCGAGGATCGGCGCCGCGACACCCAGAGCTGGCGGGTCAACGC
CGACTGGGACATCACCCGGAATACGCAGATATCTGGGAGTTACGGCCAGTTCAAGGACCAGATCGACGACACGGATCAGA
CGAATCGCCGAGATCAGCGATCGTTGGGCTTGGTCCACCAGGCGCCGCGCTCCACCTGGCGGCTCTCCTACGCCGAGGGG
CGGACGGACGGCTTGGGACGCGCCCTTGATCCCGAGGCAACCGAGTTTGATCGGCTTCTGGCCGAGTTCGGCTTTCTCGA
CGCGGATGACTTGCTCGTCGATGAGGACCGAATCACCTTTGCCGAGACCTGGCGTGGCAGCTGGGACTATACCACCGGCC
CCCACAGCTTCCGGTTGGAGTTCATCCAGAGGGACAGCGACGAGGAGTTTGGGATTGGTGACGACCGGTTCGAGGACGCG
GTGGAGCGCGAGCGCCGCGTCGTTGGGCGGTGGGGCTGGTCCTTCGGAGCGCGGACGGATGCCACGCTGCGGGGGGTCTA
CCGCTGGATCGAGGGGCGAGATGTCGACGATCAGGAGCGCGAGAGCGAGGAGTACCGTCTTTCCTTGGGTCTTTCGCGCA
GCCTGGGGCGGCGGACCTCGGGCGATTTGGATCTGATCCACCGGCAGCGCGTCGAGGGGCGTGAGGACCTCGCTTTGGAC
GAGCGCCGTCGCGAGAACCGCATCAGTGCCCGCCTGACCATGGAATTCTAA

Upstream 100 bases:

>100_bases
GGTCATGGAGGGCTGGGATACAGCGGTTACGGCTACGGCTACGGTTACGGTTACGGTAAATACGGTGGGGAGCCCCGGAG
CAGCGCCGCCAAGGAAGCGG

Downstream 100 bases:

>100_bases
GCCGCCTATGTATGAAGACTTCTACGGCCTGCGCGACAAGCCATTCGCGCTGAGCCCCGATCCACGTTTCTTCTACGCCA
GCAAAGGCCACCGCCGGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 496; Mature: 495

Protein sequence:

>496_residues
MAVSPRVARARALPGAAAALGLLLISGASIASTQWTFTPRMTVGQEWTDNADFSPRGAEESDLVTLLRPSLTLSGEGARA
ELDLNYSWDNRLYWRDSDRDRSTHNLRGSGNAELVRESIFVEGSIRRSVRAESIFDPVTARDQQETTRYRISPYWVWRQG
RFSEQEVRYVFDEARYHRSDRQPQQVHRAQYQLDSGPQFGRTFWQFRSERNWDRFDDPERAEIDRFSNQATLGYRFGRSL
RLSLSGSDGWIRVEDRRRDTQSWRVNADWDITRNTQISGSYGQFKDQIDDTDQTNRRDQRSLGLVHQAPRSTWRLSYAEG
RTDGLGRALDPEATEFDRLLAEFGFLDADDLLVDEDRITFAETWRGSWDYTTGPHSFRLEFIQRDSDEEFGIGDDRFEDA
VERERRVVGRWGWSFGARTDATLRGVYRWIEGRDVDDQERESEEYRLSLGLSRSLGRRTSGDLDLIHRQRVEGREDLALD
ERRRENRISARLTMEF

Sequences:

>Translated_496_residues
MAVSPRVARARALPGAAAALGLLLISGASIASTQWTFTPRMTVGQEWTDNADFSPRGAEESDLVTLLRPSLTLSGEGARA
ELDLNYSWDNRLYWRDSDRDRSTHNLRGSGNAELVRESIFVEGSIRRSVRAESIFDPVTARDQQETTRYRISPYWVWRQG
RFSEQEVRYVFDEARYHRSDRQPQQVHRAQYQLDSGPQFGRTFWQFRSERNWDRFDDPERAEIDRFSNQATLGYRFGRSL
RLSLSGSDGWIRVEDRRRDTQSWRVNADWDITRNTQISGSYGQFKDQIDDTDQTNRRDQRSLGLVHQAPRSTWRLSYAEG
RTDGLGRALDPEATEFDRLLAEFGFLDADDLLVDEDRITFAETWRGSWDYTTGPHSFRLEFIQRDSDEEFGIGDDRFEDA
VERERRVVGRWGWSFGARTDATLRGVYRWIEGRDVDDQERESEEYRLSLGLSRSLGRRTSGDLDLIHRQRVEGREDLALD
ERRRENRISARLTMEF
>Mature_495_residues
AVSPRVARARALPGAAAALGLLLISGASIASTQWTFTPRMTVGQEWTDNADFSPRGAEESDLVTLLRPSLTLSGEGARAE
LDLNYSWDNRLYWRDSDRDRSTHNLRGSGNAELVRESIFVEGSIRRSVRAESIFDPVTARDQQETTRYRISPYWVWRQGR
FSEQEVRYVFDEARYHRSDRQPQQVHRAQYQLDSGPQFGRTFWQFRSERNWDRFDDPERAEIDRFSNQATLGYRFGRSLR
LSLSGSDGWIRVEDRRRDTQSWRVNADWDITRNTQISGSYGQFKDQIDDTDQTNRRDQRSLGLVHQAPRSTWRLSYAEGR
TDGLGRALDPEATEFDRLLAEFGFLDADDLLVDEDRITFAETWRGSWDYTTGPHSFRLEFIQRDSDEEFGIGDDRFEDAV
ERERRVVGRWGWSFGARTDATLRGVYRWIEGRDVDDQERESEEYRLSLGLSRSLGRRTSGDLDLIHRQRVEGREDLALDE
RRRENRISARLTMEF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57878; Mature: 57747

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVSPRVARARALPGAAAALGLLLISGASIASTQWTFTPRMTVGQEWTDNADFSPRGAEE
CCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
SDLVTLLRPSLTLSGEGARAELDLNYSWDNRLYWRDSDRDRSTHNLRGSGNAELVRESIF
CCEEEEECCCEEECCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHE
VEGSIRRSVRAESIFDPVTARDQQETTRYRISPYWVWRQGRFSEQEVRYVFDEARYHRSD
ECCHHHHHHHHHHHHCCCCCCCCHHHHEEEECEEEEEECCCCCHHHHHHHHHHHHHHCCC
RQPQQVHRAQYQLDSGPQFGRTFWQFRSERNWDRFDDPERAEIDRFSNQATLGYRFGRSL
CCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCEE
RLSLSGSDGWIRVEDRRRDTQSWRVNADWDITRNTQISGSYGQFKDQIDDTDQTNRRDQR
EEEEECCCCEEEEECCCCCCCCEEECCCEEECCCCEECCCHHHHHHHCCCCCCCCCHHHH
SLGLVHQAPRSTWRLSYAEGRTDGLGRALDPEATEFDRLLAEFGFLDADDLLVDEDRITF
HHCHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCEEE
AETWRGSWDYTTGPHSFRLEFIQRDSDEEFGIGDDRFEDAVERERRVVGRWGWSFGARTD
HHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
ATLRGVYRWIEGRDVDDQERESEEYRLSLGLSRSLGRRTSGDLDLIHRQRVEGREDLALD
HHHHHHHHHHCCCCCCHHHHCCHHEEEEECHHHHHCCCCCCCHHHHHHHHCCCCCCCHHH
ERRRENRISARLTMEF
HHHHHCCCEEEEEECC
>Mature Secondary Structure 
AVSPRVARARALPGAAAALGLLLISGASIASTQWTFTPRMTVGQEWTDNADFSPRGAEE
CCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
SDLVTLLRPSLTLSGEGARAELDLNYSWDNRLYWRDSDRDRSTHNLRGSGNAELVRESIF
CCEEEEECCCEEECCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHE
VEGSIRRSVRAESIFDPVTARDQQETTRYRISPYWVWRQGRFSEQEVRYVFDEARYHRSD
ECCHHHHHHHHHHHHCCCCCCCCHHHHEEEECEEEEEECCCCCHHHHHHHHHHHHHHCCC
RQPQQVHRAQYQLDSGPQFGRTFWQFRSERNWDRFDDPERAEIDRFSNQATLGYRFGRSL
CCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCEE
RLSLSGSDGWIRVEDRRRDTQSWRVNADWDITRNTQISGSYGQFKDQIDDTDQTNRRDQR
EEEEECCCCEEEEECCCCCCCCEEECCCEEECCCCEECCCHHHHHHHCCCCCCCCCHHHH
SLGLVHQAPRSTWRLSYAEGRTDGLGRALDPEATEFDRLLAEFGFLDADDLLVDEDRITF
HHCHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCEEE
AETWRGSWDYTTGPHSFRLEFIQRDSDEEFGIGDDRFEDAVERERRVVGRWGWSFGARTD
HHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
ATLRGVYRWIEGRDVDDQERESEEYRLSLGLSRSLGRRTSGDLDLIHRQRVEGREDLALD
HHHHHHHHHHCCCCCCHHHHCCHHEEEEECHHHHHCCCCCCCHHHHHHHHCCCCCCCHHH
ERRRENRISARLTMEF
HHHHHCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA