| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is hflX [H]
Identifier: 121997462
GI number: 121997462
Start: 747574
End: 748911
Strand: Reverse
Name: hflX [H]
Synonym: Hhal_0665
Alternate gene names: 121997462
Gene position: 748911-747574 (Counterclockwise)
Preceding gene: 121997463
Following gene: 121997461
Centisome position: 27.96
GC content: 70.33
Gene sequence:
>1338_bases TTGTCGGCGAGGAGGAGAGCAATAACTGAACAGCGCATCGGTAGCGGTCCGGCGGACCTGTTCGCCCGGCCATCCGGCGG TGAGCGGGCCGTGGTTCTGCATGTCCGGCTTCCCGGCGACGCCCTCGACGCCGCGGAAGAGTTTGAGGCGCTGGGTGACT CGGCCGGGGCCGAGGTGGTGGGCCGCTTCCGGCATCGTCGCGACACCCCGGACCCGCGCACCTTCATCGGCCGCGGCAAG GTGGCCGAACTGGCCGATTGGGTGCGCGAGCTGGAGGCTGCCCTGGTGCTGGTGGATCAGCCCCTGTCCGCCGCTCAGGA GCGCAACCTGGAGACCGACCTGGGCTGCCGGGTCCTCGACCGCACCGGTCTGATCTTGGATATCTTCGCCCAGCGGGCGC GGACCTTCGAAGGCCGGCTCCAGGTGGAACTGGCCCAGCTCAAGCACGTTGCCAGCCGCCTGGTGCGTGGCTGGTCCCAC CTGGAGCGGCAGAAGGGCGGCATCGGTCTGCGCGGCCCGGGCGAGAAGCAGCTGGAGATGGACCGCCGGCTGATCGGCGG ACGCATCCAGCAGATTGAGCGGCGCCTGGCCAAGGTGCGCCGCACGCGCGAACAGGGCCGCAAGGCGCGGCGCAAGCGCG AGCTGCCCGTGGTCTCGCTGGTCGGCTACACCAACGCCGGCAAGTCCACGTTGTTCAACCACGTCACCGGCTCGCAGCGC CGGGCCGAGGATCGGCTGTTCGCCACCCTCGACCCGTCCTGGCGCCGCGTGGATCTGGCCCGCGGCTCAGCGGCGGTGGT CTCGGATACCGTGGGCTTCATCAGCCGGTTGCCCCACGACCTCGTGGCCGCCTTTCGTTCCACCCTCGAAGAGGTGACCG ACGCCGATCTGCTCCTGCACGTCATCGATGCCGGGGCCGAGGAGCGTGAGCACCAGATCGAGCAGGTGGAGGCGGTCCTC GCCGAACTCGGCGCTGACGCAGTGCCCACCCTGCGCGTCTACAACAAGGTGGATACCTGCGCCCTTGCGCCGGGACGGAT CGAGGATGACGAGGGCCTGGTGACCGGCGTCCGGATCTCCGCGGCGACCGGCGAAGGGGTCGAGACCCTGCTGGAGGCCG TGGCCGAGCGACTCGGCCCGGAGCGCATCCGTCGCCGAGTGCACCTGCGGCCGGACCAGGGGCGCTTGCGCGCCCAGCTG TTCCGGCTGGGGTGTGTCATCGAAGAGCACTGCGCCGAGGATGGCCAGCTTGCCCTGGAGGTGGAGCTCCCCGTACACGA GCTGGAACGGCTCCATGTACGCGAGGGGCTCCCGCGTGGAGAGGTTGTCCCGGCCTGA
Upstream 100 bases:
>100_bases AACGTGAACCAGATGGTGTACAAGCACGCCATCTCGACCATCGTCCCGGCACGGCGCGTGCGCCTGCCGCAGCAGGGCGA AGAGGCATCCGCCGAATCGA
Downstream 100 bases:
>100_bases CTTCGGTTGCGGTTGGCGGGGCAGCTCCCTAGAATCGGACCGTTCGATCGACGGCAGATCGTCTTAGTCACATACGGAGT CCTGAATGGCGTGGAATGAG
Product: GTP-binding protein, HSR1-like
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 445; Mature: 444
Protein sequence:
>445_residues MSARRRAITEQRIGSGPADLFARPSGGERAVVLHVRLPGDALDAAEEFEALGDSAGAEVVGRFRHRRDTPDPRTFIGRGK VAELADWVRELEAALVLVDQPLSAAQERNLETDLGCRVLDRTGLILDIFAQRARTFEGRLQVELAQLKHVASRLVRGWSH LERQKGGIGLRGPGEKQLEMDRRLIGGRIQQIERRLAKVRRTREQGRKARRKRELPVVSLVGYTNAGKSTLFNHVTGSQR RAEDRLFATLDPSWRRVDLARGSAAVVSDTVGFISRLPHDLVAAFRSTLEEVTDADLLLHVIDAGAEEREHQIEQVEAVL AELGADAVPTLRVYNKVDTCALAPGRIEDDEGLVTGVRISAATGEGVETLLEAVAERLGPERIRRRVHLRPDQGRLRAQL FRLGCVIEEHCAEDGQLALEVELPVHELERLHVREGLPRGEVVPA
Sequences:
>Translated_445_residues MSARRRAITEQRIGSGPADLFARPSGGERAVVLHVRLPGDALDAAEEFEALGDSAGAEVVGRFRHRRDTPDPRTFIGRGK VAELADWVRELEAALVLVDQPLSAAQERNLETDLGCRVLDRTGLILDIFAQRARTFEGRLQVELAQLKHVASRLVRGWSH LERQKGGIGLRGPGEKQLEMDRRLIGGRIQQIERRLAKVRRTREQGRKARRKRELPVVSLVGYTNAGKSTLFNHVTGSQR RAEDRLFATLDPSWRRVDLARGSAAVVSDTVGFISRLPHDLVAAFRSTLEEVTDADLLLHVIDAGAEEREHQIEQVEAVL AELGADAVPTLRVYNKVDTCALAPGRIEDDEGLVTGVRISAATGEGVETLLEAVAERLGPERIRRRVHLRPDQGRLRAQL FRLGCVIEEHCAEDGQLALEVELPVHELERLHVREGLPRGEVVPA >Mature_444_residues SARRRAITEQRIGSGPADLFARPSGGERAVVLHVRLPGDALDAAEEFEALGDSAGAEVVGRFRHRRDTPDPRTFIGRGKV AELADWVRELEAALVLVDQPLSAAQERNLETDLGCRVLDRTGLILDIFAQRARTFEGRLQVELAQLKHVASRLVRGWSHL ERQKGGIGLRGPGEKQLEMDRRLIGGRIQQIERRLAKVRRTREQGRKARRKRELPVVSLVGYTNAGKSTLFNHVTGSQRR AEDRLFATLDPSWRRVDLARGSAAVVSDTVGFISRLPHDLVAAFRSTLEEVTDADLLLHVIDAGAEEREHQIEQVEAVLA ELGADAVPTLRVYNKVDTCALAPGRIEDDEGLVTGVRISAATGEGVETLLEAVAERLGPERIRRRVHLRPDQGRLRAQLF RLGCVIEEHCAEDGQLALEVELPVHELERLHVREGLPRGEVVPA
Specific function: Unknown
COG id: COG2262
COG function: function code R; GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI310133118, Length=224, Percent_Identity=37.5, Blast_Score=123, Evalue=4e-28, Organism=Homo sapiens, GI310133116, Length=223, Percent_Identity=37.219730941704, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI310124269, Length=204, Percent_Identity=38.2352941176471, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI310124267, Length=204, Percent_Identity=38.2352941176471, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI310124171, Length=204, Percent_Identity=38.2352941176471, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI310124169, Length=204, Percent_Identity=38.2352941176471, Blast_Score=117, Evalue=2e-26, Organism=Escherichia coli, GI1790615, Length=418, Percent_Identity=52.3923444976077, Blast_Score=409, Evalue=1e-115, Organism=Caenorhabditis elegans, GI17561038, Length=344, Percent_Identity=29.3604651162791, Blast_Score=127, Evalue=1e-29, Organism=Drosophila melanogaster, GI24650079, Length=353, Percent_Identity=30.5949008498584, Blast_Score=121, Evalue=1e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR016496 - InterPro: IPR006073 - InterPro: IPR002917 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 49321; Mature: 49190
Theoretical pI: Translated: 7.40; Mature: 7.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSARRRAITEQRIGSGPADLFARPSGGERAVVLHVRLPGDALDAAEEFEALGDSAGAEVV CCCHHHHHHHHHCCCCCHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCHHHHH GRFRHRRDTPDPRTFIGRGKVAELADWVRELEAALVLVDQPLSAAQERNLETDLGCRVLD HHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHEECCCHHHHHHCCCCHHHCCEECC RTGLILDIFAQRARTFEGRLQVELAQLKHVASRLVRGWSHLERQKGGIGLRGPGEKQLEM CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH DRRLIGGRIQQIERRLAKVRRTREQGRKARRKRELPVVSLVGYTNAGKSTLFNHVTGSQR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCHH RAEDRLFATLDPSWRRVDLARGSAAVVSDTVGFISRLPHDLVAAFRSTLEEVTDADLLLH HHHHCEEEEECCCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH VIDAGAEEREHQIEQVEAVLAELGADAVPTLRVYNKVDTCALAPGRIEDDEGLVTGVRIS HHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCHHHHCCCCCCCCCCCCCEEEEEEE AATGEGVETLLEAVAERLGPERIRRRVHLRPDQGRLRAQLFRLGCVIEEHCAEDGQLALE CCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE VELPVHELERLHVREGLPRGEVVPA EECCHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure SARRRAITEQRIGSGPADLFARPSGGERAVVLHVRLPGDALDAAEEFEALGDSAGAEVV CCHHHHHHHHHCCCCCHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCHHHHH GRFRHRRDTPDPRTFIGRGKVAELADWVRELEAALVLVDQPLSAAQERNLETDLGCRVLD HHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHEECCCHHHHHHCCCCHHHCCEECC RTGLILDIFAQRARTFEGRLQVELAQLKHVASRLVRGWSHLERQKGGIGLRGPGEKQLEM CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH DRRLIGGRIQQIERRLAKVRRTREQGRKARRKRELPVVSLVGYTNAGKSTLFNHVTGSQR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCHH RAEDRLFATLDPSWRRVDLARGSAAVVSDTVGFISRLPHDLVAAFRSTLEEVTDADLLLH HHHHCEEEEECCCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH VIDAGAEEREHQIEQVEAVLAELGADAVPTLRVYNKVDTCALAPGRIEDDEGLVTGVRIS HHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCHHHHCCCCCCCCCCCCCEEEEEEE AATGEGVETLLEAVAERLGPERIRRRVHLRPDQGRLRAQLFRLGCVIEEHCAEDGQLALE CCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE VELPVHELERLHVREGLPRGEVVPA EECCHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8248183; 7610040; 9278503; 2020545; 3040675 [H]