| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121611258
Identifier: 121611258
GI number: 121611258
Start: 4786204
End: 4788744
Strand: Direct
Name: 121611258
Synonym: Veis_4344
Alternate gene names: NA
Gene position: 4786204-4788744 (Clockwise)
Preceding gene: 121611256
Following gene: 121611259
Centisome position: 85.98
GC content: 63.16
Gene sequence:
>2541_bases ATGACCGAAACCCGATCAACCTCTTCGCCATTTCACCGGAAAGAAAACACTATGGCCAATGTCATCACCGTTCCAGACCG CTCCATCACGATCGGCGAAACCCAGAGAATCGCTTTCGATTTTGAGAACATAGACGCCATGGACGTCACAGGAGGCAATA ACAGCCTCAAAGAGTGTCTGCAGCTGGACTACAGTCATGCCAATGGCCGCATAAAAGATTACAGTTGGCACTGGACGTTT GGCCGTTGGACCGGCGAGTTCAATGCCAACCAGGGCGTGGAGTCCACCGGCAACTACATCCGCTTCGTCCGTGCCGCCTC CGGCAGCGTACCTGCTATGGATGTCATCAGCCAAACCTTCGACATCGACACCAAGCGGCCCACGATCGTCGGCACCACCA CGATCGATGCCCCCAGCCTGACCAGGGCCGGCCAGGTAACCACCATCACCTTTACCTTCCACGAGCGGATAACCAACTTC ACACTGGAGGACCTGGCGATACAACAGCCGGACAGGGGCACGCTGGAAAACCTGCGCAGCACCGACGACGGCAGGACTTG GAAGGTAGACCTGAGGGCACCGGCCAACCTGGCGGCCAACACCGAGGTGAAGGACATCCGGATCACCATCGACATGGCCG GCATCAACGATATCCCGGGCAACGCAGGCGCGGTGCGGTCGGGGGGGACGGAATACCACACCCTCATCACCTACAACATC GACACCAAGCCGCCCAGCGCCACCATCGCCGTCACACCCAACCCCGTCACGAACAACAACGACAGACTGGTCACCGTTAT CATCACCTTCGACGAGGAAGTCACCGGCTTCACGGCAGACAACATCGATCTCAGCAACGCCAATGTCGGTACCCGTCCCG GCGCCGGCCGCACAGAAACGCTGGTCCGCGCGATCGACGGCCGCCGCGCCTACTCCATCACCTACACGGCCGCTGCGGAC ACCGAGGATGCCACCAACACCATCAGCCTGCGCAACCTCAATACCATTCGCGACGCCGCAGGCAACGTCGCAACGGTCAA CCCCACCAGCAACAACTTCGAGATCGACACCCGGGCGCCCACGGTCACGATCGCGATGGACAAAGAGCGCCTGACCGCTG GCGAAACCGCCACCGTCACTTTCACCTTCAGCGAGACCGTCACCGGCTTCAGCGACACTTCCATCGTCGTGGATGGCGCC AACGGCACTCTGGGCAACCTGAGGCAGGACACAGCCGACGGCAAAATCTGGAGAGGCACTTTCACCCCCACGGCCAGCCT GTCCAACACCCGCAGCCAGATCAGCGTGAATTACGAGGGCATCAGAGACCGCCACGGCAACAGCAACAGTGGTACGAGCA CAGCCCGCAGCTACACCGTCGACACCGCCGTCTTTGCCATCATCAGCGCCACGGTGAACGGCAGGCAGTTGGTATTGCAG TACAGCGATGAAACCGCGCTGGACCCGGAGCAGACCCATAACGCACCCAACGATGCGTTTGTGGTGCTGGTCGATGGCGT GCGCAACAACGTCACCGGCGTGCTCGTGGATGCAGCGGCCAAGACCATCACGCTGACGCTCGACAGCGCCGTGACCCGGG GCCAGCAGGTGAGCGTCGCCTACAACGACCCCAGCACCGGTGACGACCCGCAAGCGGTGCAAGAAGCCACCACCGGCACC GACGCGGCCAGCTTCGCGGCCAAACCGGCGACCAACGTTACCCCCCCCCCCCCCCCCCGCACCGGATACATCGAATGCAT CGAATGCGCCAGACGCACCGGACTCCGACCGCGACGGTGTGCCCAACGACCAGGAGGACCAGGCCACCGGCCTGCTGCGC CCCGATGGCTCGGCCGGCATGGCTGGCGATGGCAACGGCGACGGTATCAAAGACAGCCAGCAGGCCGCCGTCAGTTCGAC CCGCAGCCAGACCCTGGTGGCTGGCAGCCAGGACGGCAAGCTGATCCCCGACAGCAACGCGCGCATCAGCAAAATGGAGC ACAGCGCAGCCCCCGCCACCATGCCCAAGGGCATGGAAATGCCCGTCGGCCTGACGTCATTCACGGTGTCGCTGGCCGAA GGCCGCAGCACCGAGAGCTTCAGCCTGTACGCAGACCCGGCGCTCGGCGCCACCGGCTACTGGATCAAGGACAGCACCGG CACCTGGGTGAACCTGGCCAGCGAACCCTACGGCGGCAAGGTGGCCAGCGAAGGCGGGCGCACGCGGCTGGACTTTCAGA TCCAGGACGGCGGCCAGTACGATGCCGACGGCCAGGTCAACGGCAGCATCACCACCCCCGGGGCTGTGGCGAAAATGCCG CTGTCCATCGTCGGGCAGGCGCCCCAGGCCGATACGCATGGCTTCTGGTATTAAAGGCACCAAGGGCTTGTGCGGGTTGC GCGGGCGCCCAACGATGCAACACCCCATGCGACAGATGCGCAACAGGGTGCGGCGCGCCGTCGGCATACAGTCCAACGAT TTGGAGATTGCGCAAGCGCCAACTGCTGGCGCATGAAACCCTGCTGGAAAACAACGGATAA
Upstream 100 bases:
>100_bases CCGCAGCGCGAAATTCGTTTCCAGTTGTCAAAGATGTCACGCCGCCGGGCGGAAAAGGGGCATCACCGACACGCCTGCGC TGTGGCGGTGACCACGGCGG
Downstream 100 bases:
>100_bases TCCCTTGTCCACCGTTTGACGATTTCCTTGGCAATTTTTTTCAACCCCATCACGGAGAAAACATGATGACACCACAAACC CGCCGCTTCCCCTTGCGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: Pyrrolo-Quinoline Quinone; Flagellar Hook-Length Control Protein FliK; S-Layer Domain Protein; BNR Repeat-Containing Glycosyl Hydrolase; RTX xin; Cadherin Domain Protein; Outer Membrane Adhesin Like Proteiin; Outer Membrane Adhesin Like Protein
Number of amino acids: Translated: 846; Mature: 845
Protein sequence:
>846_residues MTETRSTSSPFHRKENTMANVITVPDRSITIGETQRIAFDFENIDAMDVTGGNNSLKECLQLDYSHANGRIKDYSWHWTF GRWTGEFNANQGVESTGNYIRFVRAASGSVPAMDVISQTFDIDTKRPTIVGTTTIDAPSLTRAGQVTTITFTFHERITNF TLEDLAIQQPDRGTLENLRSTDDGRTWKVDLRAPANLAANTEVKDIRITIDMAGINDIPGNAGAVRSGGTEYHTLITYNI DTKPPSATIAVTPNPVTNNNDRLVTVIITFDEEVTGFTADNIDLSNANVGTRPGAGRTETLVRAIDGRRAYSITYTAAAD TEDATNTISLRNLNTIRDAAGNVATVNPTSNNFEIDTRAPTVTIAMDKERLTAGETATVTFTFSETVTGFSDTSIVVDGA NGTLGNLRQDTADGKIWRGTFTPTASLSNTRSQISVNYEGIRDRHGNSNSGTSTARSYTVDTAVFAIISATVNGRQLVLQ YSDETALDPEQTHNAPNDAFVVLVDGVRNNVTGVLVDAAAKTITLTLDSAVTRGQQVSVAYNDPSTGDDPQAVQEATTGT DAASFAAKPATNVTPPPPPRTGYIECIECARRTGLRPRRCAQRPGGPGHRPAAPRWLGRHGWRWQRRRYQRQPAGRRQFD PQPDPGGWQPGRQADPRQQRAHQQNGAQRSPRHHAQGHGNARRPDVIHGVAGRRPQHRELQPVRRPGARRHRLLDQGQHR HLGEPGQRTLRRQGGQRRRAHAAGLSDPGRRPVRCRRPGQRQHHHPRGCGENAAVHRRAGAPGRYAWLLVLKAPRACAGC AGAQRCNTPCDRCATGCGAPSAYSPTIWRLRKRQLLAHETLLENNG
Sequences:
>Translated_846_residues MTETRSTSSPFHRKENTMANVITVPDRSITIGETQRIAFDFENIDAMDVTGGNNSLKECLQLDYSHANGRIKDYSWHWTF GRWTGEFNANQGVESTGNYIRFVRAASGSVPAMDVISQTFDIDTKRPTIVGTTTIDAPSLTRAGQVTTITFTFHERITNF TLEDLAIQQPDRGTLENLRSTDDGRTWKVDLRAPANLAANTEVKDIRITIDMAGINDIPGNAGAVRSGGTEYHTLITYNI DTKPPSATIAVTPNPVTNNNDRLVTVIITFDEEVTGFTADNIDLSNANVGTRPGAGRTETLVRAIDGRRAYSITYTAAAD TEDATNTISLRNLNTIRDAAGNVATVNPTSNNFEIDTRAPTVTIAMDKERLTAGETATVTFTFSETVTGFSDTSIVVDGA NGTLGNLRQDTADGKIWRGTFTPTASLSNTRSQISVNYEGIRDRHGNSNSGTSTARSYTVDTAVFAIISATVNGRQLVLQ YSDETALDPEQTHNAPNDAFVVLVDGVRNNVTGVLVDAAAKTITLTLDSAVTRGQQVSVAYNDPSTGDDPQAVQEATTGT DAASFAAKPATNVTPPPPPRTGYIECIECARRTGLRPRRCAQRPGGPGHRPAAPRWLGRHGWRWQRRRYQRQPAGRRQFD PQPDPGGWQPGRQADPRQQRAHQQNGAQRSPRHHAQGHGNARRPDVIHGVAGRRPQHRELQPVRRPGARRHRLLDQGQHR HLGEPGQRTLRRQGGQRRRAHAAGLSDPGRRPVRCRRPGQRQHHHPRGCGENAAVHRRAGAPGRYAWLLVLKAPRACAGC AGAQRCNTPCDRCATGCGAPSAYSPTIWRLRKRQLLAHETLLENNG >Mature_845_residues TETRSTSSPFHRKENTMANVITVPDRSITIGETQRIAFDFENIDAMDVTGGNNSLKECLQLDYSHANGRIKDYSWHWTFG RWTGEFNANQGVESTGNYIRFVRAASGSVPAMDVISQTFDIDTKRPTIVGTTTIDAPSLTRAGQVTTITFTFHERITNFT LEDLAIQQPDRGTLENLRSTDDGRTWKVDLRAPANLAANTEVKDIRITIDMAGINDIPGNAGAVRSGGTEYHTLITYNID TKPPSATIAVTPNPVTNNNDRLVTVIITFDEEVTGFTADNIDLSNANVGTRPGAGRTETLVRAIDGRRAYSITYTAAADT EDATNTISLRNLNTIRDAAGNVATVNPTSNNFEIDTRAPTVTIAMDKERLTAGETATVTFTFSETVTGFSDTSIVVDGAN GTLGNLRQDTADGKIWRGTFTPTASLSNTRSQISVNYEGIRDRHGNSNSGTSTARSYTVDTAVFAIISATVNGRQLVLQY SDETALDPEQTHNAPNDAFVVLVDGVRNNVTGVLVDAAAKTITLTLDSAVTRGQQVSVAYNDPSTGDDPQAVQEATTGTD AASFAAKPATNVTPPPPPRTGYIECIECARRTGLRPRRCAQRPGGPGHRPAAPRWLGRHGWRWQRRRYQRQPAGRRQFDP QPDPGGWQPGRQADPRQQRAHQQNGAQRSPRHHAQGHGNARRPDVIHGVAGRRPQHRELQPVRRPGARRHRLLDQGQHRH LGEPGQRTLRRQGGQRRRAHAAGLSDPGRRPVRCRRPGQRQHHHPRGCGENAAVHRRAGAPGRYAWLLVLKAPRACAGCA GAQRCNTPCDRCATGCGAPSAYSPTIWRLRKRQLLAHETLLENNG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 92451; Mature: 92319
Theoretical pI: Translated: 9.98; Mature: 9.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTETRSTSSPFHRKENTMANVITVPDRSITIGETQRIAFDFENIDAMDVTGGNNSLKECL CCCCCCCCCCCHHCCCCEEEEEECCCCEEEECCCEEEEEECCCCCEEEECCCCHHHHHHH QLDYSHANGRIKDYSWHWTFGRWTGEFNANQGVESTGNYIRFVRAASGSVPAMDVISQTF HHHHHCCCCEEEEEEEEEEECEEECCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH DIDTKRPTIVGTTTIDAPSLTRAGQVTTITFTFHERITNFTLEDLAIQQPDRGTLENLRS CCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEHHHHCCCHHHHEECCCCCCHHHHHCC TDDGRTWKVDLRAPANLAANTEVKDIRITIDMAGINDIPGNAGAVRSGGTEYHTLITYNI CCCCCEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEE DTKPPSATIAVTPNPVTNNNDRLVTVIITFDEEVTGFTADNIDLSNANVGTRPGAGRTET CCCCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCCEEECCEEECCCCCCCCCCCCHHHH LVRAIDGRRAYSITYTAAADTEDATNTISLRNLNTIRDAAGNVATVNPTSNNFEIDTRAP HHHHHCCCEEEEEEEEECCCCCCCCCEEEECCCCHHHHCCCCEEEECCCCCCEEEECCCC TVTIAMDKERLTAGETATVTFTFSETVTGFSDTSIVVDGANGTLGNLRQDTADGKIWRGT EEEEEECHHHCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEE FTPTASLSNTRSQISVNYEGIRDRHGNSNSGTSTARSYTVDTAVFAIISATVNGRQLVLQ CCCCCCCCCCCEEEEEEECCHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCEEEEEE YSDETALDPEQTHNAPNDAFVVLVDGVRNNVTGVLVDAAAKTITLTLDSAVTRGQQVSVA ECCCCCCCHHHHCCCCCCEEEEEECCCCCCCCEEEEECCCEEEEEEEHHHHCCCCEEEEE YNDPSTGDDPQAVQEATTGTDAASFAAKPATNVTPPPPPRTGYIECIECARRTGLRPRRC ECCCCCCCCHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHH AQRPGGPGHRPAAPRWLGRHGWRWQRRRYQRQPAGRRQFDPQPDPGGWQPGRQADPRQQR HCCCCCCCCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH AHQQNGAQRSPRHHAQGHGNARRPDVIHGVAGRRPQHRELQPVRRPGARRHRLLDQGQHR HHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCHHHHHHHHCCCCC HLGEPGQRTLRRQGGQRRRAHAAGLSDPGRRPVRCRRPGQRQHHHPRGCGENAAVHRRAG CCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC APGRYAWLLVLKAPRACAGCAGAQRCNTPCDRCATGCGAPSAYSPTIWRLRKRQLLAHET CCCCEEEEEEEECCCHHHCCCCCHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH LLENNG HHCCCC >Mature Secondary Structure TETRSTSSPFHRKENTMANVITVPDRSITIGETQRIAFDFENIDAMDVTGGNNSLKECL CCCCCCCCCCHHCCCCEEEEEECCCCEEEECCCEEEEEECCCCCEEEECCCCHHHHHHH QLDYSHANGRIKDYSWHWTFGRWTGEFNANQGVESTGNYIRFVRAASGSVPAMDVISQTF HHHHHCCCCEEEEEEEEEEECEEECCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH DIDTKRPTIVGTTTIDAPSLTRAGQVTTITFTFHERITNFTLEDLAIQQPDRGTLENLRS CCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEHHHHCCCHHHHEECCCCCCHHHHHCC TDDGRTWKVDLRAPANLAANTEVKDIRITIDMAGINDIPGNAGAVRSGGTEYHTLITYNI CCCCCEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEE DTKPPSATIAVTPNPVTNNNDRLVTVIITFDEEVTGFTADNIDLSNANVGTRPGAGRTET CCCCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCCEEECCEEECCCCCCCCCCCCHHHH LVRAIDGRRAYSITYTAAADTEDATNTISLRNLNTIRDAAGNVATVNPTSNNFEIDTRAP HHHHHCCCEEEEEEEEECCCCCCCCCEEEECCCCHHHHCCCCEEEECCCCCCEEEECCCC TVTIAMDKERLTAGETATVTFTFSETVTGFSDTSIVVDGANGTLGNLRQDTADGKIWRGT EEEEEECHHHCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEE FTPTASLSNTRSQISVNYEGIRDRHGNSNSGTSTARSYTVDTAVFAIISATVNGRQLVLQ CCCCCCCCCCCEEEEEEECCHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCEEEEEE YSDETALDPEQTHNAPNDAFVVLVDGVRNNVTGVLVDAAAKTITLTLDSAVTRGQQVSVA ECCCCCCCHHHHCCCCCCEEEEEECCCCCCCCEEEEECCCEEEEEEEHHHHCCCCEEEEE YNDPSTGDDPQAVQEATTGTDAASFAAKPATNVTPPPPPRTGYIECIECARRTGLRPRRC ECCCCCCCCHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHH AQRPGGPGHRPAAPRWLGRHGWRWQRRRYQRQPAGRRQFDPQPDPGGWQPGRQADPRQQR HCCCCCCCCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH AHQQNGAQRSPRHHAQGHGNARRPDVIHGVAGRRPQHRELQPVRRPGARRHRLLDQGQHR HHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCHHHHHHHHCCCCC HLGEPGQRTLRRQGGQRRRAHAAGLSDPGRRPVRCRRPGQRQHHHPRGCGENAAVHRRAG CCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC APGRYAWLLVLKAPRACAGCAGAQRCNTPCDRCATGCGAPSAYSPTIWRLRKRQLLAHET CCCCEEEEEEEECCCHHHCCCCCHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH LLENNG HHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA