| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121611256
Identifier: 121611256
GI number: 121611256
Start: 4783376
End: 4785748
Strand: Direct
Name: 121611256
Synonym: Veis_4342
Alternate gene names: NA
Gene position: 4783376-4785748 (Clockwise)
Preceding gene: 121611255
Following gene: 121611258
Centisome position: 85.93
GC content: 65.02
Gene sequence:
>2373_bases ATGACCGAAGCCCGATCAACCCCTCTTCATCCCACCAATCCATTCTCATTCCATCGAAAGGAACACACCGTGGCCCACAG CATCACCATGGATAACTCCGCCCTCAAAGCCGGCGAAACGGCGAGAGTCACCGTCTTCATCGACAACACTTACAACCCGG TATTGCGAGGCACAGGGACGCGCCTTCGGCTCGATGGCCTGGACTTTTCGCAGGCCCCTGGCACTGTGCTGTATGTGACC AGCGAGACGGTCGCCGGGGGTGACAATTACTACTTCGACCTCACCCCCACCCCGAACACGCAGAACGCCGGCGGCACCAT CCGCATGAGCATTCCCGCCTCAGGTGACCGCCCTGCCATCAACCTGAGCAAGACCTACACCGCCGACACCCAGCGGCCCA CTCTCGCCACCACCTACCGGTTCTCGCCCGACTGCGACTTGACCGCCGGCGATACAGCCACCATCACCTTCAGCTTTTCC GAGCCGGTCACCGGCTTCACCATCGATGACCTGACGATACCGACGGGCAAGGGCACGCTGAGCAACCTGCGCACCACCGA CGGCGGCACCACTTGGACGGTAGACCTGAGGGCGCCGGCCACCTTGCCGGCCAACACCCCTGAGGATGTCCAGATCACCG TCAACATGGCCGGCATCACCGATGCTGCGGGCAACGCGGGCACGGGAAGCGCAACCCTTGCCACCTACAGCCTCGGCAAC AAGCCGCCCAGCATCGTCTCTGTGGTCGGCCCCACCTCCATCGTCTTGGACGACACCGACGTCACCATTACCTTCACCTT CAGCGAGGCAGTCACCGGCTTCACGTTGGCCAACATCAATTTGGACAACTCCAGTGCCTCTCCCTACATCACCTACAGCC CGAAAGCGCCGGTCAGCGCAGATGGTGGCCGCACCTGGACCATCACCTACCGTGCCGCTCCGCGCACCACGGATTCCACC AACACCGTCAGCATCCGCAACCTCGATGGCGTGCGTGACCTCGCAGGCAACGCCGCAGTGCCTAACTCCAGCGCCAGCAC CGACAACTACGAGGTCGATGCCGAGGATCCCCATCCCACCAGCGCTACGTTTGACAAAGCGCGCCTCACCGCTGGCGAAA CCGCCACCGTCACCATCACTTTCAACGAGAGCGTCGTCAGTGGCCTCACCGAAGCTGCCATTCAGATCGCCAACGGTTCT GTGAGCAACCTGAGGTCGGTCGCCGGCTCCGACGGCAGAGTCTGGACAGTCACCTTCACACCCACGGCCAACCTGGCGCG CACCAGCAGCTCGATCACAGTAAATGTGGACGGCCTCAGAGATCGCGCCGGCAACACCAGCTCTGGTTCCCAGCCGTTCT ACGACTCCACCATCGTCATCGACACCAAGGTCTTTGTCGTCAACGCCGCCACGGTGAACGGCAAGCAGTTGGTATTGCGC TACAGCGATGAAACCATGCTGGACCCGGACCAGACCCACAACGCGCCCAACGATGCCTTCGTGGTGCTGGTCGATGGCGT GCGCAACAACGTCACCGGCGTGGCCGTGGATGCAGCGGCCAAGACCGTCACGCTGACGCTTGAGGGCGCGGTGAGCAAGG ACCAGCAGGTGACCGTCGCCTACAACGACCCCAGCACCGGCAACGACCCGCAAGCGGTGCAGGAGGCCGGCACCGGCACC ACCAGCGGCCACGACGCGGCCAGTTTCGCGGCCAAGCCGGTGACCAACCTCACCCGGCCCCCGGTCGCACCCGCCACACC GGAGGCGCCGGATGCGCCGGACTCCGACCGCGACGGTCTGTCCAACAACCGGGAGGACCAGGCCCCCGGCCTGCTGCGCC CCGACGGCTCGGCCGGCCTGGCTGGCGACGGCAACGGCGATGGCGTCAAAGACAGCCTGCAGGTCGCCGTCGCTTCGACC CGCGACCTGACCCTGGTGGCCGGCAGCCGGGACGGCAAACTGATCCCCGACAGCAACGCGCGCATCACCGAACTGGTGCG CAGCGATGCCCCGGCCAAGCTGCCCAAGGGCATGGAGATGCCGCTCGGCCTGACCTCATTCAAGGTATCGCTGGCCGAAG GCCGCAGCACCGAGAGCTTCAGCCTGTACGTAGATTCGGCGCTCGGCGCCAACGGCTACTGGCTCAAGAACGGCGCCGGC ACCTGGGTGAACCTGGCCAGCGAACCCTACGGCGGCAAAGTGAGCAGCGAAGGCGGGCGCACGCGGCTGGACTTTCAGAT CCAGGACGGCGGCGAGTACGACGCCGACGGCCAGGCCGATGGCAGCATCACCGCCCCCGGCGCCGTGGCGAAGATGCCGC TGTCCATCCTCGGGCAGACGCCCCAGGTCGATTCGCATGGGTACTGGTTCTAA
Upstream 100 bases:
>100_bases CAATCTGTCAGAGATATCGCCCGCCACTGGGCAGACGCAGCCCCGCCAGACAAGGTACGGCACTGACACACACTTGCGCT GTGGCACTGAGCACAAGCGG
Downstream 100 bases:
>100_bases CGATTCTGCGGGCGCCAAATGCCCAGGCATGACGACGACCTGCTGGAAAGTAGGGGGGGGGTGTTCAGCACGCAGGCGTT GGCCCGTGGAACGCGGCTGG
Product: outer membrane protein
Products: NA
Alternate protein names: Pyrrolo-Quinoline Quinone; Glycosyl Hydrolase BNR Repeat; Flagellar Hook-Length Control Protein FliK; S-Layer Domain Protein; BNR Repeat-Containing Glycosyl Hydrolase; RTX xin; Cadherin Domain-Containing Protein; Cadherin Domain Protein; Outer Membrane Adhesin Like Protein; Fibronectin Type III Domain Protein
Number of amino acids: Translated: 790; Mature: 789
Protein sequence:
>790_residues MTEARSTPLHPTNPFSFHRKEHTVAHSITMDNSALKAGETARVTVFIDNTYNPVLRGTGTRLRLDGLDFSQAPGTVLYVT SETVAGGDNYYFDLTPTPNTQNAGGTIRMSIPASGDRPAINLSKTYTADTQRPTLATTYRFSPDCDLTAGDTATITFSFS EPVTGFTIDDLTIPTGKGTLSNLRTTDGGTTWTVDLRAPATLPANTPEDVQITVNMAGITDAAGNAGTGSATLATYSLGN KPPSIVSVVGPTSIVLDDTDVTITFTFSEAVTGFTLANINLDNSSASPYITYSPKAPVSADGGRTWTITYRAAPRTTDST NTVSIRNLDGVRDLAGNAAVPNSSASTDNYEVDAEDPHPTSATFDKARLTAGETATVTITFNESVVSGLTEAAIQIANGS VSNLRSVAGSDGRVWTVTFTPTANLARTSSSITVNVDGLRDRAGNTSSGSQPFYDSTIVIDTKVFVVNAATVNGKQLVLR YSDETMLDPDQTHNAPNDAFVVLVDGVRNNVTGVAVDAAAKTVTLTLEGAVSKDQQVTVAYNDPSTGNDPQAVQEAGTGT TSGHDAASFAAKPVTNLTRPPVAPATPEAPDAPDSDRDGLSNNREDQAPGLLRPDGSAGLAGDGNGDGVKDSLQVAVAST RDLTLVAGSRDGKLIPDSNARITELVRSDAPAKLPKGMEMPLGLTSFKVSLAEGRSTESFSLYVDSALGANGYWLKNGAG TWVNLASEPYGGKVSSEGGRTRLDFQIQDGGEYDADGQADGSITAPGAVAKMPLSILGQTPQVDSHGYWF
Sequences:
>Translated_790_residues MTEARSTPLHPTNPFSFHRKEHTVAHSITMDNSALKAGETARVTVFIDNTYNPVLRGTGTRLRLDGLDFSQAPGTVLYVT SETVAGGDNYYFDLTPTPNTQNAGGTIRMSIPASGDRPAINLSKTYTADTQRPTLATTYRFSPDCDLTAGDTATITFSFS EPVTGFTIDDLTIPTGKGTLSNLRTTDGGTTWTVDLRAPATLPANTPEDVQITVNMAGITDAAGNAGTGSATLATYSLGN KPPSIVSVVGPTSIVLDDTDVTITFTFSEAVTGFTLANINLDNSSASPYITYSPKAPVSADGGRTWTITYRAAPRTTDST NTVSIRNLDGVRDLAGNAAVPNSSASTDNYEVDAEDPHPTSATFDKARLTAGETATVTITFNESVVSGLTEAAIQIANGS VSNLRSVAGSDGRVWTVTFTPTANLARTSSSITVNVDGLRDRAGNTSSGSQPFYDSTIVIDTKVFVVNAATVNGKQLVLR YSDETMLDPDQTHNAPNDAFVVLVDGVRNNVTGVAVDAAAKTVTLTLEGAVSKDQQVTVAYNDPSTGNDPQAVQEAGTGT TSGHDAASFAAKPVTNLTRPPVAPATPEAPDAPDSDRDGLSNNREDQAPGLLRPDGSAGLAGDGNGDGVKDSLQVAVAST RDLTLVAGSRDGKLIPDSNARITELVRSDAPAKLPKGMEMPLGLTSFKVSLAEGRSTESFSLYVDSALGANGYWLKNGAG TWVNLASEPYGGKVSSEGGRTRLDFQIQDGGEYDADGQADGSITAPGAVAKMPLSILGQTPQVDSHGYWF >Mature_789_residues TEARSTPLHPTNPFSFHRKEHTVAHSITMDNSALKAGETARVTVFIDNTYNPVLRGTGTRLRLDGLDFSQAPGTVLYVTS ETVAGGDNYYFDLTPTPNTQNAGGTIRMSIPASGDRPAINLSKTYTADTQRPTLATTYRFSPDCDLTAGDTATITFSFSE PVTGFTIDDLTIPTGKGTLSNLRTTDGGTTWTVDLRAPATLPANTPEDVQITVNMAGITDAAGNAGTGSATLATYSLGNK PPSIVSVVGPTSIVLDDTDVTITFTFSEAVTGFTLANINLDNSSASPYITYSPKAPVSADGGRTWTITYRAAPRTTDSTN TVSIRNLDGVRDLAGNAAVPNSSASTDNYEVDAEDPHPTSATFDKARLTAGETATVTITFNESVVSGLTEAAIQIANGSV SNLRSVAGSDGRVWTVTFTPTANLARTSSSITVNVDGLRDRAGNTSSGSQPFYDSTIVIDTKVFVVNAATVNGKQLVLRY SDETMLDPDQTHNAPNDAFVVLVDGVRNNVTGVAVDAAAKTVTLTLEGAVSKDQQVTVAYNDPSTGNDPQAVQEAGTGTT SGHDAASFAAKPVTNLTRPPVAPATPEAPDAPDSDRDGLSNNREDQAPGLLRPDGSAGLAGDGNGDGVKDSLQVAVASTR DLTLVAGSRDGKLIPDSNARITELVRSDAPAKLPKGMEMPLGLTSFKVSLAEGRSTESFSLYVDSALGANGYWLKNGAGT WVNLASEPYGGKVSSEGGRTRLDFQIQDGGEYDADGQADGSITAPGAVAKMPLSILGQTPQVDSHGYWF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 82385; Mature: 82254
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEARSTPLHPTNPFSFHRKEHTVAHSITMDNSALKAGETARVTVFIDNTYNPVLRGTGT CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHCCCCCEEEEEEECCCCCCEEECCCC RLRLDGLDFSQAPGTVLYVTSETVAGGDNYYFDLTPTPNTQNAGGTIRMSIPASGDRPAI EEEEECCCCCCCCCEEEEEECCEECCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCEE NLSKTYTADTQRPTLATTYRFSPDCDLTAGDTATITFSFSEPVTGFTIDDLTIPTGKGTL EEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCEEECCEEECCCCCCH SNLRTTDGGTTWTVDLRAPATLPANTPEDVQITVNMAGITDAAGNAGTGSATLATYSLGN HHCEECCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCC KPPSIVSVVGPTSIVLDDTDVTITFTFSEAVTGFTLANINLDNSSASPYITYSPKAPVSA CCCCEEEEECCCEEEEECCCEEEEEEEHHCCCEEEEEEEEECCCCCCCEEEECCCCCCCC DGGRTWTITYRAAPRTTDSTNTVSIRNLDGVRDLAGNAAVPNSSASTDNYEVDAEDPHPT CCCEEEEEEEEECCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCCEEECCCCCCCC SATFDKARLTAGETATVTITFNESVVSGLTEAAIQIANGSVSNLRSVAGSDGRVWTVTFT CCCCCCEEECCCCEEEEEEEECHHHHHHHHHHEEEECCCCHHHHHHHCCCCCCEEEEEEC PTANLARTSSSITVNVDGLRDRAGNTSSGSQPFYDSTIVIDTKVFVVNAATVNGKQLVLR CCCCCEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEE YSDETMLDPDQTHNAPNDAFVVLVDGVRNNVTGVAVDAAAKTVTLTLEGAVSKDQQVTVA ECCCCCCCCHHHCCCCCCEEEEEECCCCCCCCEEEEECCCEEEEEEEECCCCCCCEEEEE YNDPSTGNDPQAVQEAGTGTTSGHDAASFAAKPVTNLTRPPVAPATPEAPDAPDSDRDGL ECCCCCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SNNREDQAPGLLRPDGSAGLAGDGNGDGVKDSLQVAVASTRDLTLVAGSRDGKLIPDSNA CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCC RITELVRSDAPAKLPKGMEMPLGLTSFKVSLAEGRSTESFSLYVDSALGANGYWLKNGAG HHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCEEEECCCC TWVNLASEPYGGKVSSEGGRTRLDFQIQDGGEYDADGQADGSITAPGAVAKMPLSILGQT CEEEECCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCEECCCHHHHCCHHHHCCC PQVDSHGYWF CCCCCCCCCC >Mature Secondary Structure TEARSTPLHPTNPFSFHRKEHTVAHSITMDNSALKAGETARVTVFIDNTYNPVLRGTGT CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHCCCCCEEEEEEECCCCCCEEECCCC RLRLDGLDFSQAPGTVLYVTSETVAGGDNYYFDLTPTPNTQNAGGTIRMSIPASGDRPAI EEEEECCCCCCCCCEEEEEECCEECCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCEE NLSKTYTADTQRPTLATTYRFSPDCDLTAGDTATITFSFSEPVTGFTIDDLTIPTGKGTL EEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCEEECCEEECCCCCCH SNLRTTDGGTTWTVDLRAPATLPANTPEDVQITVNMAGITDAAGNAGTGSATLATYSLGN HHCEECCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCC KPPSIVSVVGPTSIVLDDTDVTITFTFSEAVTGFTLANINLDNSSASPYITYSPKAPVSA CCCCEEEEECCCEEEEECCCEEEEEEEHHCCCEEEEEEEEECCCCCCCEEEECCCCCCCC DGGRTWTITYRAAPRTTDSTNTVSIRNLDGVRDLAGNAAVPNSSASTDNYEVDAEDPHPT CCCEEEEEEEEECCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCCEEECCCCCCCC SATFDKARLTAGETATVTITFNESVVSGLTEAAIQIANGSVSNLRSVAGSDGRVWTVTFT CCCCCCEEECCCCEEEEEEEECHHHHHHHHHHEEEECCCCHHHHHHHCCCCCCEEEEEEC PTANLARTSSSITVNVDGLRDRAGNTSSGSQPFYDSTIVIDTKVFVVNAATVNGKQLVLR CCCCCEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEE YSDETMLDPDQTHNAPNDAFVVLVDGVRNNVTGVAVDAAAKTVTLTLEGAVSKDQQVTVA ECCCCCCCCHHHCCCCCCEEEEEECCCCCCCCEEEEECCCEEEEEEEECCCCCCCEEEEE YNDPSTGNDPQAVQEAGTGTTSGHDAASFAAKPVTNLTRPPVAPATPEAPDAPDSDRDGL ECCCCCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SNNREDQAPGLLRPDGSAGLAGDGNGDGVKDSLQVAVASTRDLTLVAGSRDGKLIPDSNA CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCC RITELVRSDAPAKLPKGMEMPLGLTSFKVSLAEGRSTESFSLYVDSALGANGYWLKNGAG HHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCEEEECCCC TWVNLASEPYGGKVSSEGGRTRLDFQIQDGGEYDADGQADGSITAPGAVAKMPLSILGQT CEEEECCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCEECCCHHHHCCHHHHCCC PQVDSHGYWF CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA