| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776437
Identifier: 119776437
GI number: 119776437
Start: 3931898
End: 3932545
Strand: Reverse
Name: 119776437
Synonym: Sama_3305
Alternate gene names: NA
Gene position: 3932545-3931898 (Counterclockwise)
Preceding gene: 119776438
Following gene: 119776433
Centisome position: 91.32
GC content: 30.4
Gene sequence:
>648_bases ATGAGTTGTTATGTATATAGGGATGTTCCTGATTATTTTATATCTGGATTTTGTGCAGTAAGAAATTCATGTGATAATTT CCTTAATGTGCTAAAAGTTGTAGAGATTGTAAATAATTCTGTTCCAATAATAGATGAGGAATATCCGAATGATTTTGATT TGGTTATTTTTTCTGGAGATTTTAAAAGAGCAATAGTTAAGAAGAATGATGGGTATTTTTCAATGGCCATCCCATTTCAA GTAATTTTTGATAATGAAAGATTACATTTTAATTGTGATAGCATAGGTGAAGAAGTCGATGGTAGATTCATTTCTATTAT GAGGAATGCTACGAGCACTTTAAAAGAAGTCAGCTTCTCACATGAAGATGTTATATACTCGATAATGGAAAATTTTAGAT TAGAACTCGAAGAAGCTATGTGCTATTTTGACGTTTTTGCTTCTTTATTAACTGATGATCATGGATATTTTCGTTTTGAT GATGATCAAGATAACGAAAATGGTAGAATTCATCCAAGGTATCATTTTGATATTTTTTATAAAAATAGCTCATCAATTAA AATTGGAATGGATCGAATTGCTGATCCCGATTGTTTATATGCGCTTATCGATGGTTCAAGAGAGAAAAAATATCTCTCTA ACGGGTGA
Upstream 100 bases:
>100_bases AATTAATAAACAGAATTACAACGATTACGGGTGATGATGACTATGATCAGGGTTATTTAGATTCACTTCTACAGCTTGAA TATGAAAGGAATGTCAAGTT
Downstream 100 bases:
>100_bases TATATGAGCGAATAACTAAGACATATATGGACGCTCCACTGAACACAAGGTGTTGCCCTCGGATAGCCATCCGATGTCTG CCTTGTCTGTCATCCTGTCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 215; Mature: 214
Protein sequence:
>215_residues MSCYVYRDVPDYFISGFCAVRNSCDNFLNVLKVVEIVNNSVPIIDEEYPNDFDLVIFSGDFKRAIVKKNDGYFSMAIPFQ VIFDNERLHFNCDSIGEEVDGRFISIMRNATSTLKEVSFSHEDVIYSIMENFRLELEEAMCYFDVFASLLTDDHGYFRFD DDQDNENGRIHPRYHFDIFYKNSSSIKIGMDRIADPDCLYALIDGSREKKYLSNG
Sequences:
>Translated_215_residues MSCYVYRDVPDYFISGFCAVRNSCDNFLNVLKVVEIVNNSVPIIDEEYPNDFDLVIFSGDFKRAIVKKNDGYFSMAIPFQ VIFDNERLHFNCDSIGEEVDGRFISIMRNATSTLKEVSFSHEDVIYSIMENFRLELEEAMCYFDVFASLLTDDHGYFRFD DDQDNENGRIHPRYHFDIFYKNSSSIKIGMDRIADPDCLYALIDGSREKKYLSNG >Mature_214_residues SCYVYRDVPDYFISGFCAVRNSCDNFLNVLKVVEIVNNSVPIIDEEYPNDFDLVIFSGDFKRAIVKKNDGYFSMAIPFQV IFDNERLHFNCDSIGEEVDGRFISIMRNATSTLKEVSFSHEDVIYSIMENFRLELEEAMCYFDVFASLLTDDHGYFRFDD DQDNENGRIHPRYHFDIFYKNSSSIKIGMDRIADPDCLYALIDGSREKKYLSNG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25017; Mature: 24886
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSCYVYRDVPDYFISGFCAVRNSCDNFLNVLKVVEIVNNSVPIIDEEYPNDFDLVIFSGD CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEECCC FKRAIVKKNDGYFSMAIPFQVIFDNERLHFNCDSIGEEVDGRFISIMRNATSTLKEVSFS CEEEEEECCCCEEEEEEEEEEEEECCEEEEEHHHHCHHHCCHHHHHHHHHHHHHHHHCCC HEDVIYSIMENFRLELEEAMCYFDVFASLLTDDHGYFRFDDDQDNENGRIHPRYHFDIFY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEECEEEEEEEEE KNSSSIKIGMDRIADPDCLYALIDGSREKKYLSNG ECCCCEEECHHHCCCCCCEEEEECCCCCCHHCCCC >Mature Secondary Structure SCYVYRDVPDYFISGFCAVRNSCDNFLNVLKVVEIVNNSVPIIDEEYPNDFDLVIFSGD CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEECCC FKRAIVKKNDGYFSMAIPFQVIFDNERLHFNCDSIGEEVDGRFISIMRNATSTLKEVSFS CEEEEEECCCCEEEEEEEEEEEEECCEEEEEHHHHCHHHCCHHHHHHHHHHHHHHHHCCC HEDVIYSIMENFRLELEEAMCYFDVFASLLTDDHGYFRFDDDQDNENGRIHPRYHFDIFY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEECEEEEEEEEE KNSSSIKIGMDRIADPDCLYALIDGSREKKYLSNG ECCCCEEECHHHCCCCCCEEEEECCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA