Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119776433

Identifier: 119776433

GI number: 119776433

Start: 3927896

End: 3928753

Strand: Reverse

Name: 119776433

Synonym: Sama_3301

Alternate gene names: NA

Gene position: 3928753-3927896 (Counterclockwise)

Preceding gene: 119776437

Following gene: 119776431

Centisome position: 91.24

GC content: 58.97

Gene sequence:

>858_bases
ATGGCTTCAACAAGTCAGTATGAGGACGCGACTATGAAGACTCCATTCCAAGGCACACTTTCTTCCCTGAGTATCAAAAC
CCTCATGGCAGCCATGATGCTGGCGGGCAGCGCTGCTTATGCCTCGGCGGACACCCTGACCGGCAGCCCCATAGGTGCGC
CCATGGTGTCGGCGGTGGGCACTCAGCTCAGTGACAAGCCAGACAGCAGCCGCTATGTGGACGACGCCATGGCCAGTGAA
CTCAAGGCCAGAGTGCAGCAAATTCAGGCCGTGGCCGCCGAGCCCAAGACCCGCGAACAGGTGGCGGCGCAGAAAGAAAC
CAGCGCCAAACTGCAGCGCAGCCGTCAGCAAAGCTACGGCGTGTATCATGAGTTCAGCTTTTACAATGCCTTTGCCCGCC
TGTTTGAAGACCGCGACTACGATGGCTTCCATCGCAGCTTTTCGGTGACCTTCGATGCGGATGTGTATTCCAACTACCCT
GACGAATCGGTGCCCGTGTATGCCGAGCTGTACCTGAGCCGCAACGGCGGCGACTGGGTGCGATACTTCACCACCGAGAC
CTTTTATATCCGTGGCGCCAATGAGCTGGATGACTATGAAGTGCTGACCACCCTGGCCCAGGGCTACGGCACCGACCATT
ACGACGTGCTGATTGACCTCTATGAAGTGGGCTACAGCGACATAGTGGCCACCATCAGCTCGGACGATACCAATGATTTG
TATGCCCTGCCGCTGGAGAGCGCCAACTATGACACAGAAGAGGTGGTGATCGATGTGGAAGGCGGTGGCAGCCTGGGCGC
AGGTGCGCTGGCGCTGCTGGCATTGGGTGCCTGCCTGCGCCGCCGCGAGCGGAAATAG

Upstream 100 bases:

>100_bases
CTGGAAATCCATTGACCTATTGATAGCGGTTAACGGCTGAACATTGGCTGAAAGTGCTAAAAAACCGCGTTCAGGAAGCG
TTCATGGCGGGGGGGATTTA

Downstream 100 bases:

>100_bases
ACCGTAAACCGTAAACCGTAGACCGTGAGCTCGTTACGACTCAAGCCCATCGAGCCAGGCCAGCAGCTCCTGCTGATGCT
CCCCAAGTCGTGGCGGCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MASTSQYEDATMKTPFQGTLSSLSIKTLMAAMMLAGSAAYASADTLTGSPIGAPMVSAVGTQLSDKPDSSRYVDDAMASE
LKARVQQIQAVAAEPKTREQVAAQKETSAKLQRSRQQSYGVYHEFSFYNAFARLFEDRDYDGFHRSFSVTFDADVYSNYP
DESVPVYAELYLSRNGGDWVRYFTTETFYIRGANELDDYEVLTTLAQGYGTDHYDVLIDLYEVGYSDIVATISSDDTNDL
YALPLESANYDTEEVVIDVEGGGSLGAGALALLALGACLRRRERK

Sequences:

>Translated_285_residues
MASTSQYEDATMKTPFQGTLSSLSIKTLMAAMMLAGSAAYASADTLTGSPIGAPMVSAVGTQLSDKPDSSRYVDDAMASE
LKARVQQIQAVAAEPKTREQVAAQKETSAKLQRSRQQSYGVYHEFSFYNAFARLFEDRDYDGFHRSFSVTFDADVYSNYP
DESVPVYAELYLSRNGGDWVRYFTTETFYIRGANELDDYEVLTTLAQGYGTDHYDVLIDLYEVGYSDIVATISSDDTNDL
YALPLESANYDTEEVVIDVEGGGSLGAGALALLALGACLRRRERK
>Mature_284_residues
ASTSQYEDATMKTPFQGTLSSLSIKTLMAAMMLAGSAAYASADTLTGSPIGAPMVSAVGTQLSDKPDSSRYVDDAMASEL
KARVQQIQAVAAEPKTREQVAAQKETSAKLQRSRQQSYGVYHEFSFYNAFARLFEDRDYDGFHRSFSVTFDADVYSNYPD
ESVPVYAELYLSRNGGDWVRYFTTETFYIRGANELDDYEVLTTLAQGYGTDHYDVLIDLYEVGYSDIVATISSDDTNDLY
ALPLESANYDTEEVVIDVEGGGSLGAGALALLALGACLRRRERK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31318; Mature: 31187

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASTSQYEDATMKTPFQGTLSSLSIKTLMAAMMLAGSAAYASADTLTGSPIGAPMVSAVG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHHHHHHC
TQLSDKPDSSRYVDDAMASELKARVQQIQAVAAEPKTREQVAAQKETSAKLQRSRQQSYG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
VYHEFSFYNAFARLFEDRDYDGFHRSFSVTFDADVYSNYPDESVPVYAELYLSRNGGDWV
CHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCCCCCCCCEEEEEEEECCCCCEE
RYFTTETFYIRGANELDDYEVLTTLAQGYGTDHYDVLIDLYEVGYSDIVATISSDDTNDL
EEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHEEEEECCCCCCCE
YALPLESANYDTEEVVIDVEGGGSLGAGALALLALGACLRRRERK
EEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ASTSQYEDATMKTPFQGTLSSLSIKTLMAAMMLAGSAAYASADTLTGSPIGAPMVSAVG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHHHHHHC
TQLSDKPDSSRYVDDAMASELKARVQQIQAVAAEPKTREQVAAQKETSAKLQRSRQQSYG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
VYHEFSFYNAFARLFEDRDYDGFHRSFSVTFDADVYSNYPDESVPVYAELYLSRNGGDWV
CHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCCCCCCCCEEEEEEEECCCCCEE
RYFTTETFYIRGANELDDYEVLTTLAQGYGTDHYDVLIDLYEVGYSDIVATISSDDTNDL
EEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHEEEEECCCCCCCE
YALPLESANYDTEEVVIDVEGGGSLGAGALALLALGACLRRRERK
EEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA