Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776251

Identifier: 119776251

GI number: 119776251

Start: 3698165

End: 3699052

Strand: Direct

Name: 119776251

Synonym: Sama_3119

Alternate gene names: NA

Gene position: 3698165-3699052 (Clockwise)

Preceding gene: 119776249

Following gene: 119776252

Centisome position: 85.88

GC content: 57.21

Gene sequence:

>888_bases
ATGAAAAAGTTATTCATTATGCTGGCGATGTTTTTTGCCGTCAGCCTGGCAACCAGCCCCGTGGTGGAAGCAAAGAAATT
CGGCGGCAATAAGTCTGCCGGTAAAACTCAGCAAACGGCGCAGTCGCAGCCTGCGGCCACCAATACCACGGCCACCAATA
CCACTGCAGCGCCTGCCACGGCAGCACCTGCGGCGAAAAAAGGCATGATGGGCGGTATGCTTGGCGGCCTGCTGGCAGGT
GGCTTACTGGCGGCTCTCTTTATGGGTGAAGGTTTTGAAAACATCCAGATCATGGACATAGTGATCATCGCCTTGCTGGC
CTTCGTGCTGTTTAAAGTCATCCGCATGCTGATGGCCTCCAAAGCACAGGCGCAGCCAAGACCAGCCTACTCAGGTGCAG
GGCAAGCCAGCACCGCGCCGGGGCAGGACCTTTATCGCCAGCAGGCCGAACCCGCCGCCTTTGGAGGTCTCGGCGGCAAC
AGCGGCTTCGCCCAGCCCCAGAGCACAGTACCGTTTCAATTACCACCGGGGTTCGATTTAGCCGCCTTTTTGGAAGGCGC
CCGCGGCCACTATAAAACCCTGCAACAGGCCTGGAATGAGGGCGACCTGAACAAAATTCAGGAATACGTGTCGATTGAGC
TCTTTAACGAACTCAGCCAGCAACGCCGTGAACTCGAAGGCCAGCAGCACACCGAAGTGATGTTCCTCGATGCCGAACTG
GTGCGCGCCACCTACAACAACGAGCTTGCCGAAGTGAGCGTAAAATTCAGCGGCCGCTACCGCGACGCCGCTGAAGGCGT
AGAGGAAGACATCAAGGAAGTCTGGCATCTGGAGCGTAACCTGCTGCAAGCCAACTCCCCCTGGCTGATTGTGGGCATCC
AGCAATAA

Upstream 100 bases:

>100_bases
TTCAGCACTTTCTTATTCATGCGGTTTTTATCACCATTGACATGAACCAACATGACGCTATGATGCCTGCCATTCGGTGT
TTAAAATAGAGATGGAATAA

Downstream 100 bases:

>100_bases
AAGCGCGCATTAGCATGCTCTTTGCCACGCAGTAACACCAAACAAAACCCCGGCACAGACCGGGGTTTTATTTTTATGGT
CCGAAAGTCGATAGCAGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: Transmembrane Protein; Tim44 Domain Protein; Import Inner Membrane Translocase Subunit; Tim44-Like Domain-Contain Protein; Tim44-Like Domain Protein

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MKKLFIMLAMFFAVSLATSPVVEAKKFGGNKSAGKTQQTAQSQPAATNTTATNTTAAPATAAPAAKKGMMGGMLGGLLAG
GLLAALFMGEGFENIQIMDIVIIALLAFVLFKVIRMLMASKAQAQPRPAYSGAGQASTAPGQDLYRQQAEPAAFGGLGGN
SGFAQPQSTVPFQLPPGFDLAAFLEGARGHYKTLQQAWNEGDLNKIQEYVSIELFNELSQQRRELEGQQHTEVMFLDAEL
VRATYNNELAEVSVKFSGRYRDAAEGVEEDIKEVWHLERNLLQANSPWLIVGIQQ

Sequences:

>Translated_295_residues
MKKLFIMLAMFFAVSLATSPVVEAKKFGGNKSAGKTQQTAQSQPAATNTTATNTTAAPATAAPAAKKGMMGGMLGGLLAG
GLLAALFMGEGFENIQIMDIVIIALLAFVLFKVIRMLMASKAQAQPRPAYSGAGQASTAPGQDLYRQQAEPAAFGGLGGN
SGFAQPQSTVPFQLPPGFDLAAFLEGARGHYKTLQQAWNEGDLNKIQEYVSIELFNELSQQRRELEGQQHTEVMFLDAEL
VRATYNNELAEVSVKFSGRYRDAAEGVEEDIKEVWHLERNLLQANSPWLIVGIQQ
>Mature_295_residues
MKKLFIMLAMFFAVSLATSPVVEAKKFGGNKSAGKTQQTAQSQPAATNTTATNTTAAPATAAPAAKKGMMGGMLGGLLAG
GLLAALFMGEGFENIQIMDIVIIALLAFVLFKVIRMLMASKAQAQPRPAYSGAGQASTAPGQDLYRQQAEPAAFGGLGGN
SGFAQPQSTVPFQLPPGFDLAAFLEGARGHYKTLQQAWNEGDLNKIQEYVSIELFNELSQQRRELEGQQHTEVMFLDAEL
VRATYNNELAEVSVKFSGRYRDAAEGVEEDIKEVWHLERNLLQANSPWLIVGIQQ

Specific function: Unknown

COG id: COG4395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31775; Mature: 31775

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLFIMLAMFFAVSLATSPVVEAKKFGGNKSAGKTQQTAQSQPAATNTTATNTTAAPAT
CHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
AAPAAKKGMMGGMLGGLLAGGLLAALFMGEGFENIQIMDIVIIALLAFVLFKVIRMLMAS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KAQAQPRPAYSGAGQASTAPGQDLYRQQAEPAAFGGLGGNSGFAQPQSTVPFQLPPGFDL
HHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCH
AAFLEGARGHYKTLQQAWNEGDLNKIQEYVSIELFNELSQQRRELEGQQHTEVMFLDAEL
HHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHH
VRATYNNELAEVSVKFSGRYRDAAEGVEEDIKEVWHLERNLLQANSPWLIVGIQQ
HHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
>Mature Secondary Structure
MKKLFIMLAMFFAVSLATSPVVEAKKFGGNKSAGKTQQTAQSQPAATNTTATNTTAAPAT
CHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
AAPAAKKGMMGGMLGGLLAGGLLAALFMGEGFENIQIMDIVIIALLAFVLFKVIRMLMAS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KAQAQPRPAYSGAGQASTAPGQDLYRQQAEPAAFGGLGGNSGFAQPQSTVPFQLPPGFDL
HHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCH
AAFLEGARGHYKTLQQAWNEGDLNKIQEYVSIELFNELSQQRRELEGQQHTEVMFLDAEL
HHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHH
VRATYNNELAEVSVKFSGRYRDAAEGVEEDIKEVWHLERNLLQANSPWLIVGIQQ
HHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA