Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776229

Identifier: 119776229

GI number: 119776229

Start: 3670826

End: 3671077

Strand: Direct

Name: 119776229

Synonym: Sama_3097

Alternate gene names: NA

Gene position: 3670826-3671077 (Clockwise)

Preceding gene: 119776225

Following gene: 119776230

Centisome position: 85.25

GC content: 54.37

Gene sequence:

>252_bases
ATGATCATGTCCGCCACATACGAGACCCGGCGTCAGGAAGCCGTTATGGCCGTACTCGAAGGTGGCCGTTTGCCATCTGA
AGTCGCCAGGGATCACGGGATTGCCAGCAAGACCCTGCTCAAATGGATCCGGGAGTCCCATCAATCCCGCAGTAGCCGTC
GCTGCAAGCTCGAGCAGGAAATAGAAGCTCTTGAGATGAAATTGTCCGGACTGCGACAGGAAATCTCCAAACTACAAACG
TTCAACGCTTGA

Upstream 100 bases:

>100_bases
CTGTATTTAACCACTTGAAATCAGAGTGGCACTACATTGGGTCTGCTGGCGTCAGTCAGTGGGAATTAGGACGAGAGGTC
AAATTCAGGAGGACAGGGTT

Downstream 100 bases:

>100_bases
TTGATCTGTCTAAACCCACTGAGCGGTGAGGCAAGATAGCACCTCCGCGCCGTGTCAATCAGAGCAATCATCGCCCCGAT
TCCGTCGAGTCGGGGTTATC

Product: putative transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 83; Mature: 83

Protein sequence:

>83_residues
MIMSATYETRRQEAVMAVLEGGRLPSEVARDHGIASKTLLKWIRESHQSRSSRRCKLEQEIEALEMKLSGLRQEISKLQT
FNA

Sequences:

>Translated_83_residues
MIMSATYETRRQEAVMAVLEGGRLPSEVARDHGIASKTLLKWIRESHQSRSSRRCKLEQEIEALEMKLSGLRQEISKLQT
FNA
>Mature_83_residues
MIMSATYETRRQEAVMAVLEGGRLPSEVARDHGIASKTLLKWIRESHQSRSSRRCKLEQEIEALEMKLSGLRQEISKLQT
FNA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9517; Mature: 9517

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMSATYETRRQEAVMAVLEGGRLPSEVARDHGIASKTLLKWIRESHQSRSSRRCKLEQE
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
IEALEMKLSGLRQEISKLQTFNA
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIMSATYETRRQEAVMAVLEGGRLPSEVARDHGIASKTLLKWIRESHQSRSSRRCKLEQE
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
IEALEMKLSGLRQEISKLQTFNA
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA