Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776045

Identifier: 119776045

GI number: 119776045

Start: 3462367

End: 3463845

Strand: Direct

Name: 119776045

Synonym: Sama_2913

Alternate gene names: NA

Gene position: 3462367-3463845 (Clockwise)

Preceding gene: 119776044

Following gene: 119776046

Centisome position: 80.41

GC content: 56.46

Gene sequence:

>1479_bases
GTGAGTGCTACTGCCGAGAACTGGCAAAGCCTGTCGCCCTGGTCTGTAGTCAGCTTTACCCTGGGCACGGCGCGCCAGGT
ACTGACCCAGGGCTATGCCCTTATCCCCATCGTCTTTACCGGCTGGAAACAGGGGTTCGACTCACCGCTGGTCATTTCCG
TGGCCTTATTGGTGCTGCTGGGCATTCTCACCTTCGCCCTGGTGCAATATGCCACCTACAGGTTCCGCCCCGGCAGCCAT
AAACTGGAAGTGCGCCGGGGGCTGTTTTTCAAACGCAAAGATGAATTGCCGCTGGATAAAATTCAGAACGTGCGACTCGA
CCAACCCTTTTACTTTAAACCTCTCTTACTCTGCACCCTGGTAGTCGAGACCGCAGGCTCCCGTAAAGATGAGGTGCAAA
TTGCCGCCATGCCCCTGAGCAATGCCATGGCCCTCAAGTCGCATTTGCTGCAAAAGCCTGCCGAACCTGTTAACCATCAC
GAGGAACAAACGGACTCACTGCTGCTTGAAAGAGGCGGCAAGCCACTGTTTTTATTTGGGCTTTACCACAACAACTTTGT
CTGGTTTATGGTCTTCGCCGGCTCTATCATGGGGCAGCTGCCGGTGGAGAGCTGGTTCGAATCCCTTGGCCTTAACACCT
TTGTGCGTATCGAATCCCAGGGGCCGCTGTGGGGCACCTTAAGTGTGATAGCACTGATTTTGCTGGGATATATCTGTTTT
GCGCTCATTTCAGTGCTGTTTGCCTTTTTGAAATACTACCCCTACCGACTAAAGCTTGGCGCCGAGTCCACCCTGGAGCG
CACGGGCGGCATATTGGCCCACCAGCAGGATGCGCTGGCGATGAAACGCATTCAACTGGTGGAATTCAATCAACCCCCCA
TTGCACGGCTGCTGAAGCGCTGGACGGTGTTTTTCCGTCAGGTTCAGGGCCATGAGGTTGAACAACACCTCAAGCTGCCA
CTGCTTATCCCCTCTGTGACTCCCGATGAGCTCCCGCCCCTGTTTGCCCAGCTCAAGGCGCTGCCCGGCCAAGACAGCCT
GCCGCCACAGGTGCATGAACTGCGCCCCATCCACAATGGCTGGCTGAAACGCAGACTCGCATTTGTCTGGCTTCCGGCGC
TGCTGACGATGCTGATTTCCCGGGAGCTGGTTGTTATCGAGCTCGCCCTGACCGTGGCCATACTGGGCTCGGTCGGACTT
TGGCTCAGGTTCAAACACTGGGGCTACCGGCACGACGATACCCTGGTGTGGCAACGCACCGGCCTGCTTGGCCAAAGTAT
CAAAAGAGTGCCCCTGTACAAGGTGCAACACGTGAGTCTGCTTCAATCGCCCGGGCAACGGAAAAAAGGCTTGGCGACCC
TGGAGCTCGGGCTTGCCAGCGGTAAGATTTTCCTGCCCTGGATCCCCTACAGCGAGGCCAGGACCATTGCTCTGGCCGCA
CTGACACAGCTGGACAAGCACAGAGGTAACTGGATTTAA

Upstream 100 bases:

>100_bases
CTGGCAGCGGAAACGCTGAAATTGAAATTCGTGGCCTGCCCATCGACGATGCGGAGGCGCTGCGGGGCCACCTGCTCGCC
CGTGCTGGAGTAACTGAACT

Downstream 100 bases:

>100_bases
CCGGAGCACAAATGACGCATTGGCAGCAAATCATCGATTTTTGGTTCAGCGAAATCAGCCCCAAACAATGGTGGCAAAAG
GATGCTGACTTTGACCATCT

Product: membrane protein

Products: NA

Alternate protein names: Stress Protein; Bacterial Membrane Flanked Domain Family; Serine/Threonine Protein Kinase; Membrane-Flanked Domain Protein

Number of amino acids: Translated: 492; Mature: 491

Protein sequence:

>492_residues
MSATAENWQSLSPWSVVSFTLGTARQVLTQGYALIPIVFTGWKQGFDSPLVISVALLVLLGILTFALVQYATYRFRPGSH
KLEVRRGLFFKRKDELPLDKIQNVRLDQPFYFKPLLLCTLVVETAGSRKDEVQIAAMPLSNAMALKSHLLQKPAEPVNHH
EEQTDSLLLERGGKPLFLFGLYHNNFVWFMVFAGSIMGQLPVESWFESLGLNTFVRIESQGPLWGTLSVIALILLGYICF
ALISVLFAFLKYYPYRLKLGAESTLERTGGILAHQQDALAMKRIQLVEFNQPPIARLLKRWTVFFRQVQGHEVEQHLKLP
LLIPSVTPDELPPLFAQLKALPGQDSLPPQVHELRPIHNGWLKRRLAFVWLPALLTMLISRELVVIELALTVAILGSVGL
WLRFKHWGYRHDDTLVWQRTGLLGQSIKRVPLYKVQHVSLLQSPGQRKKGLATLELGLASGKIFLPWIPYSEARTIALAA
LTQLDKHRGNWI

Sequences:

>Translated_492_residues
MSATAENWQSLSPWSVVSFTLGTARQVLTQGYALIPIVFTGWKQGFDSPLVISVALLVLLGILTFALVQYATYRFRPGSH
KLEVRRGLFFKRKDELPLDKIQNVRLDQPFYFKPLLLCTLVVETAGSRKDEVQIAAMPLSNAMALKSHLLQKPAEPVNHH
EEQTDSLLLERGGKPLFLFGLYHNNFVWFMVFAGSIMGQLPVESWFESLGLNTFVRIESQGPLWGTLSVIALILLGYICF
ALISVLFAFLKYYPYRLKLGAESTLERTGGILAHQQDALAMKRIQLVEFNQPPIARLLKRWTVFFRQVQGHEVEQHLKLP
LLIPSVTPDELPPLFAQLKALPGQDSLPPQVHELRPIHNGWLKRRLAFVWLPALLTMLISRELVVIELALTVAILGSVGL
WLRFKHWGYRHDDTLVWQRTGLLGQSIKRVPLYKVQHVSLLQSPGQRKKGLATLELGLASGKIFLPWIPYSEARTIALAA
LTQLDKHRGNWI
>Mature_491_residues
SATAENWQSLSPWSVVSFTLGTARQVLTQGYALIPIVFTGWKQGFDSPLVISVALLVLLGILTFALVQYATYRFRPGSHK
LEVRRGLFFKRKDELPLDKIQNVRLDQPFYFKPLLLCTLVVETAGSRKDEVQIAAMPLSNAMALKSHLLQKPAEPVNHHE
EQTDSLLLERGGKPLFLFGLYHNNFVWFMVFAGSIMGQLPVESWFESLGLNTFVRIESQGPLWGTLSVIALILLGYICFA
LISVLFAFLKYYPYRLKLGAESTLERTGGILAHQQDALAMKRIQLVEFNQPPIARLLKRWTVFFRQVQGHEVEQHLKLPL
LIPSVTPDELPPLFAQLKALPGQDSLPPQVHELRPIHNGWLKRRLAFVWLPALLTMLISRELVVIELALTVAILGSVGLW
LRFKHWGYRHDDTLVWQRTGLLGQSIKRVPLYKVQHVSLLQSPGQRKKGLATLELGLASGKIFLPWIPYSEARTIALAAL
TQLDKHRGNWI

Specific function: Unknown

COG id: COG3428

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55721; Mature: 55590

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATAENWQSLSPWSVVSFTLGTARQVLTQGYALIPIVFTGWKQGFDSPLVISVALLVLL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECHHHCCCCHHHHHHHHHHHH
GILTFALVQYATYRFRPGSHKLEVRRGLFFKRKDELPLDKIQNVRLDQPFYFKPLLLCTL
HHHHHHHHHHHHHCCCCCCCHHHHHHCCCEECCCCCCHHHHCCCCCCCCCHHHHHHHHHH
VVETAGSRKDEVQIAAMPLSNAMALKSHLLQKPAEPVNHHEEQTDSLLLERGGKPLFLFG
HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCCCEEEEEE
LYHNNFVWFMVFAGSIMGQLPVESWFESLGLNTFVRIESQGPLWGTLSVIALILLGYICF
EECCCEEEEHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
ALISVLFAFLKYYPYRLKLGAESTLERTGGILAHQQDALAMKRIQLVEFNQPPIARLLKR
HHHHHHHHHHHHCCEEEEECCHHHHHHHCCCCEECHHHHHHHHHHEEECCCCHHHHHHHH
WTVFFRQVQGHEVEQHLKLPLLIPSVTPDELPPLFAQLKALPGQDSLPPQVHELRPIHNG
HHHHHHHHCCCCHHHHCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHCCHHHH
WLKRRLAFVWLPALLTMLISRELVVIELALTVAILGSVGLWLRFKHWGYRHDDTLVWQRT
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEEEHH
GLLGQSIKRVPLYKVQHVSLLQSPGQRKKGLATLELGLASGKIFLPWIPYSEARTIALAA
CHHHHHHHCCCCHHHHHHHHHHCCCCHHCCCEEEEEEECCCEEEEECCCCCCHHHHHHHH
LTQLDKHRGNWI
HHHHHHHCCCCC
>Mature Secondary Structure 
SATAENWQSLSPWSVVSFTLGTARQVLTQGYALIPIVFTGWKQGFDSPLVISVALLVLL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECHHHCCCCHHHHHHHHHHHH
GILTFALVQYATYRFRPGSHKLEVRRGLFFKRKDELPLDKIQNVRLDQPFYFKPLLLCTL
HHHHHHHHHHHHHCCCCCCCHHHHHHCCCEECCCCCCHHHHCCCCCCCCCHHHHHHHHHH
VVETAGSRKDEVQIAAMPLSNAMALKSHLLQKPAEPVNHHEEQTDSLLLERGGKPLFLFG
HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCCCEEEEEE
LYHNNFVWFMVFAGSIMGQLPVESWFESLGLNTFVRIESQGPLWGTLSVIALILLGYICF
EECCCEEEEHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
ALISVLFAFLKYYPYRLKLGAESTLERTGGILAHQQDALAMKRIQLVEFNQPPIARLLKR
HHHHHHHHHHHHCCEEEEECCHHHHHHHCCCCEECHHHHHHHHHHEEECCCCHHHHHHHH
WTVFFRQVQGHEVEQHLKLPLLIPSVTPDELPPLFAQLKALPGQDSLPPQVHELRPIHNG
HHHHHHHHCCCCHHHHCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHCCHHHH
WLKRRLAFVWLPALLTMLISRELVVIELALTVAILGSVGLWLRFKHWGYRHDDTLVWQRT
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEEEHH
GLLGQSIKRVPLYKVQHVSLLQSPGQRKKGLATLELGLASGKIFLPWIPYSEARTIALAA
CHHHHHHHCCCCHHHHHHHHHHCCCCHHCCCEEEEEEECCCEEEEECCCCCCHHHHHHHH
LTQLDKHRGNWI
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA