| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119774584
Identifier: 119774584
GI number: 119774584
Start: 1757126
End: 1758889
Strand: Reverse
Name: 119774584
Synonym: Sama_1447
Alternate gene names: NA
Gene position: 1758889-1757126 (Counterclockwise)
Preceding gene: 119774595
Following gene: 119774579
Centisome position: 40.85
GC content: 53.29
Gene sequence:
>1764_bases ATGATCCGTTACAGCATTATTCCAAGTGATCCCAAAGCTCATCTGTTTGAGGTCAATCTGGAGATCCCAACCCCAAGTGT TAACCAATTGCTTTCGTTGCCAGCCTGGATCCCGGGCTCGTATATGGTGCGTGACTTTGCCCGCAATCTGATTGGAATCA AAGCCTGGCAAGCGAATAACCCCGTCGCTCTGACTCAACTCGATAAACAACGTTGGCAAGTGGAAAACCGCTCAACAGAG CCGCTGCGCCTGTCATATCAGGTGTACGCATTCGACCTGTCGGTACGCAGTGCACATCTGGATATGACCCATGGTTTTTT CAATGGCTCCAGTGTGTTTCTGGCGGTAGAAGGCCAAACCGACGGACCGCTGTGGGTTGAGATTCAGACGCCGACCGAGA TTGCCCTCAATCATTGGCGAGTGGCGACAACCCTGCCAAGACGCAGCGGCGATGCCTGGCAGTTTGGCGCCTTTGAAGCC GAAAACTATGACGCCCTTATCGACCACCCGGTAGAAATGGGTGACTTTACCCAGGCAAGTTTTGAGGCCTGCGGCGTGCC CCACCACATAGTGCTGACCGGCCGCCATCGCTGCGATATGGAGCGCCTTTGCCAGGATTTAAAAGCCATCTGCGAAACGC AAATACAGCTGTTTGGTGCGCCAGCCCCCTTTGATGAATACCTGTTTATGACCATGGTATTGGACAATGGCTTTGGCGGA TTGGAACACCGCAGCTCAACGGCACTGGTGTGCTCACGTAAAGATTTGCCGCTGTCCATGGACGACAAAGTCAACAAGGA CTATCGCACTTATTTATCCCTGTGCAGCCATGAGTATTTCCACAGCTGGAACGTTAAGCGGATTAAACCCGCTACCTTTA TCCCCTATTCGCTGGAGAGTGAGAGCTACACCCGGCAATTGTGGGCTTACGAAGGACTGACGTCTTACTATGACGACCTG CTGACGCTTAAAGCGGGCAAAGTCGATACCGAAACCTACCTGGACATGCTCAGTGAAACCATGACACGGGTATACCGGGG TGTGGGCCGTTTCAAACAAAGCCTCAGGGATTCGAGCTTTAATGCCTGGACCAAGTTTTACAAACAGGATGAAAATGCCC AAAACGCCATCGTAAGCTATTACACCAAGGGCGCACTCTTCGGCCTGTATCTCGATCTTGTCATCCGCAAGGAAACCGCA GGTAAGGAGAGCCTGGACTCCCTGATGCGCCTGTTATGGGAGCGTTTTGGACTGACCGGACAGGGAACTGACGAACACAG TCATCAGGCTCTGGTAGCAGAGCTGCTTGGCCGCGATGTGAGCGATATTTTCGCCTATTTGGATAACACGGACGACTTAC CCCTCGCCCCGCTGCTTGCCGAGTTTGGTGTTCACATGGCGCTCAGGGCCGCAAGCGGTCAAAACGACACCGGGGGCGGA AAACCTTCGCCACTGACACTGTCTCTTGGTGCCAAATTCAAGGCAGAGCCATTGGGGGTAAGAATTCAAACGGTGGCAGA ATCCAGCAGTGCACATCTGGCCGGTTTATCGGCTGGTGACTTACTGATTGCCATCGATGGGCTTCAGGCCACGGCCAATC TTGAAAACGTGCTTAACAGTTACAATGAAGGCGATGAGCTGGCGCTGCATTTCTTCCGCCGCGACGAATTGATGACTGCC AAATTACGGCTTCAGGCAGCCCCTCTGGATACAGTGTCGCTGCATCTGGAAGATGCCACTGCGATAGCGGCCTGGCTCGG GTAA
Upstream 100 bases:
>100_bases AGCAAGACCCAGCACATTTGGGTAAGAGAAAAGCCAACTCCCTTTGCCAACAGAGCTGGAATTTGGCAGCATGCCTGCAT AATTGATTTCGGGAACCATT
Downstream 100 bases:
>100_bases CTGAGTCAGAAACAATAAAAAAGGCGTCCTGGACGCCTTTCTTATTGCTCAGCTGCATCGATGACTCTACAAAAACACCA ACACCGTCAAACATGCACTT
Product: protease
Products: NA
Alternate protein names: Peptidase M; Protease; M61 Family Peptidase; M61 Glycyl Aminopeptidase; M61 Family Glycyl Aminopeptidase; Pdz/Dhr/Glgf; Glycyl Aminopeptidase; Trypsin-Like Serine Protease; Metallopeptidase; Aminopeptidase N Family Protein; PDZ Domain-Containing Protein; Protease With C-Terminal PDZ Domain-Containing Protein; Glycyl Aminopeptidase Protein; PDZ/DHR/GLGFPeptidase M; Signaling Protein; M61 Glycyl Aminopeptidase Protein; PDZ Domain Protein; M61 Glycyl Aminopeptidase Family Protein
Number of amino acids: Translated: 587; Mature: 587
Protein sequence:
>587_residues MIRYSIIPSDPKAHLFEVNLEIPTPSVNQLLSLPAWIPGSYMVRDFARNLIGIKAWQANNPVALTQLDKQRWQVENRSTE PLRLSYQVYAFDLSVRSAHLDMTHGFFNGSSVFLAVEGQTDGPLWVEIQTPTEIALNHWRVATTLPRRSGDAWQFGAFEA ENYDALIDHPVEMGDFTQASFEACGVPHHIVLTGRHRCDMERLCQDLKAICETQIQLFGAPAPFDEYLFMTMVLDNGFGG LEHRSSTALVCSRKDLPLSMDDKVNKDYRTYLSLCSHEYFHSWNVKRIKPATFIPYSLESESYTRQLWAYEGLTSYYDDL LTLKAGKVDTETYLDMLSETMTRVYRGVGRFKQSLRDSSFNAWTKFYKQDENAQNAIVSYYTKGALFGLYLDLVIRKETA GKESLDSLMRLLWERFGLTGQGTDEHSHQALVAELLGRDVSDIFAYLDNTDDLPLAPLLAEFGVHMALRAASGQNDTGGG KPSPLTLSLGAKFKAEPLGVRIQTVAESSSAHLAGLSAGDLLIAIDGLQATANLENVLNSYNEGDELALHFFRRDELMTA KLRLQAAPLDTVSLHLEDATAIAAWLG
Sequences:
>Translated_587_residues MIRYSIIPSDPKAHLFEVNLEIPTPSVNQLLSLPAWIPGSYMVRDFARNLIGIKAWQANNPVALTQLDKQRWQVENRSTE PLRLSYQVYAFDLSVRSAHLDMTHGFFNGSSVFLAVEGQTDGPLWVEIQTPTEIALNHWRVATTLPRRSGDAWQFGAFEA ENYDALIDHPVEMGDFTQASFEACGVPHHIVLTGRHRCDMERLCQDLKAICETQIQLFGAPAPFDEYLFMTMVLDNGFGG LEHRSSTALVCSRKDLPLSMDDKVNKDYRTYLSLCSHEYFHSWNVKRIKPATFIPYSLESESYTRQLWAYEGLTSYYDDL LTLKAGKVDTETYLDMLSETMTRVYRGVGRFKQSLRDSSFNAWTKFYKQDENAQNAIVSYYTKGALFGLYLDLVIRKETA GKESLDSLMRLLWERFGLTGQGTDEHSHQALVAELLGRDVSDIFAYLDNTDDLPLAPLLAEFGVHMALRAASGQNDTGGG KPSPLTLSLGAKFKAEPLGVRIQTVAESSSAHLAGLSAGDLLIAIDGLQATANLENVLNSYNEGDELALHFFRRDELMTA KLRLQAAPLDTVSLHLEDATAIAAWLG >Mature_587_residues MIRYSIIPSDPKAHLFEVNLEIPTPSVNQLLSLPAWIPGSYMVRDFARNLIGIKAWQANNPVALTQLDKQRWQVENRSTE PLRLSYQVYAFDLSVRSAHLDMTHGFFNGSSVFLAVEGQTDGPLWVEIQTPTEIALNHWRVATTLPRRSGDAWQFGAFEA ENYDALIDHPVEMGDFTQASFEACGVPHHIVLTGRHRCDMERLCQDLKAICETQIQLFGAPAPFDEYLFMTMVLDNGFGG LEHRSSTALVCSRKDLPLSMDDKVNKDYRTYLSLCSHEYFHSWNVKRIKPATFIPYSLESESYTRQLWAYEGLTSYYDDL LTLKAGKVDTETYLDMLSETMTRVYRGVGRFKQSLRDSSFNAWTKFYKQDENAQNAIVSYYTKGALFGLYLDLVIRKETA GKESLDSLMRLLWERFGLTGQGTDEHSHQALVAELLGRDVSDIFAYLDNTDDLPLAPLLAEFGVHMALRAASGQNDTGGG KPSPLTLSLGAKFKAEPLGVRIQTVAESSSAHLAGLSAGDLLIAIDGLQATANLENVLNSYNEGDELALHFFRRDELMTA KLRLQAAPLDTVSLHLEDATAIAAWLG
Specific function: Unknown
COG id: COG3975
COG function: function code R; Predicted protease with the C-terminal PDZ domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65721; Mature: 65721
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRYSIIPSDPKAHLFEVNLEIPTPSVNQLLSLPAWIPGSYMVRDFARNLIGIKAWQANN CEEEEECCCCCCCEEEEEEEECCCCCHHHHHCCCCCCCCHHHHHHHHHHHHEEEEECCCC PVALTQLDKQRWQVENRSTEPLRLSYQVYAFDLSVRSAHLDMTHGFFNGSSVFLAVEGQT CEEEEEHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEEEEEEEECCEECCCEEEEEEECCC DGPLWVEIQTPTEIALNHWRVATTLPRRSGDAWQFGAFEAENYDALIDHPVEMGDFTQAS CCCEEEEEECCHHHHHCCEEEEEECCCCCCCCEEECCCCCCCCCHHHCCCCCCCCCCHHH FEACGVPHHIVLTGRHRCDMERLCQDLKAICETQIQLFGAPAPFDEYLFMTMVLDNGFGG HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCCCHHHHEEEEEEEECCCCC LEHRSSTALVCSRKDLPLSMDDKVNKDYRTYLSLCSHEYFHSWNVKRIKPATFIPYSLES CCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCEECCEECCC ESYTRQLWAYEGLTSYYDDLLTLKAGKVDTETYLDMLSETMTRVYRGVGRFKQSLRDSSF CHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH NAWTKFYKQDENAQNAIVSYYTKGALFGLYLDLVIRKETAGKESLDSLMRLLWERFGLTG HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCC QGTDEHSHQALVAELLGRDVSDIFAYLDNTDDLPLAPLLAEFGVHMALRAASGQNDTGGG CCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHCHHEEEEECCCCCCCCCC KPSPLTLSLGAKFKAEPLGVRIQTVAESSSAHLAGLSAGDLLIAIDGLQATANLENVLNS CCCCEEEEECCCEECCCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHC YNEGDELALHFFRRDELMTAKLRLQAAPLDTVSLHLEDATAIAAWLG CCCCCHHEEHHHHHCCCEEEEEEEEECCCCEEEEEECCHHHHHHHCC >Mature Secondary Structure MIRYSIIPSDPKAHLFEVNLEIPTPSVNQLLSLPAWIPGSYMVRDFARNLIGIKAWQANN CEEEEECCCCCCCEEEEEEEECCCCCHHHHHCCCCCCCCHHHHHHHHHHHHEEEEECCCC PVALTQLDKQRWQVENRSTEPLRLSYQVYAFDLSVRSAHLDMTHGFFNGSSVFLAVEGQT CEEEEEHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEEEEEEEECCEECCCEEEEEEECCC DGPLWVEIQTPTEIALNHWRVATTLPRRSGDAWQFGAFEAENYDALIDHPVEMGDFTQAS CCCEEEEEECCHHHHHCCEEEEEECCCCCCCCEEECCCCCCCCCHHHCCCCCCCCCCHHH FEACGVPHHIVLTGRHRCDMERLCQDLKAICETQIQLFGAPAPFDEYLFMTMVLDNGFGG HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCCCHHHHEEEEEEEECCCCC LEHRSSTALVCSRKDLPLSMDDKVNKDYRTYLSLCSHEYFHSWNVKRIKPATFIPYSLES CCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCEECCEECCC ESYTRQLWAYEGLTSYYDDLLTLKAGKVDTETYLDMLSETMTRVYRGVGRFKQSLRDSSF CHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH NAWTKFYKQDENAQNAIVSYYTKGALFGLYLDLVIRKETAGKESLDSLMRLLWERFGLTG HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCC QGTDEHSHQALVAELLGRDVSDIFAYLDNTDDLPLAPLLAEFGVHMALRAASGQNDTGGG CCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHCHHEEEEECCCCCCCCCC KPSPLTLSLGAKFKAEPLGVRIQTVAESSSAHLAGLSAGDLLIAIDGLQATANLENVLNS CCCCEEEEECCCEECCCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHC YNEGDELALHFFRRDELMTAKLRLQAAPLDTVSLHLEDATAIAAWLG CCCCCHHEEHHHHHCCCEEEEEEEEECCCCEEEEEECCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA