Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774318

Identifier: 119774318

GI number: 119774318

Start: 1443797

End: 1445113

Strand: Direct

Name: 119774318

Synonym: Sama_1181

Alternate gene names: NA

Gene position: 1443797-1445113 (Clockwise)

Preceding gene: 119774317

Following gene: 119774319

Centisome position: 33.53

GC content: 58.16

Gene sequence:

>1317_bases
ATGTCTGCACCTGCTTTGTCCCGTGCGCCGTTGCCGCAAAACGCCCCGTCATCGGGCGCCGAGCATGAACTTCAGCTGCC
GCAAGTCATGTCGACACTTGCCGCGCTGGCTTGTGTATTGCAGCAAGGGGCAGCGCTTTGGGATTTTCGGCCTTTTGACC
GCCAGGATAACCCTTGGCGGCTAAGCTTTCCCAATCTCTGGCAAGCAATTGAGACGCTTAATGATGATTGCCTTGACGCG
TTGGATCTGGTGCAGGCGGAACTCTGTCATAGCCTTTGGCCAGCGCTGTGCCAAGACCTAAAGGTAAACGGACTCAAGGT
GTGGGATCAGTCGCTTTTTTTATGGCAATTACCGCACCACTCGCAGGCAAGTCAAACCCTGGAGGCGCTGCCGGAACATG
ATCTCAGCCGTTTTTCCGCCGGGATCAAAGGCCGCAAATGGCAACAGATAAGCCGCTTTGCCAATATCGTCAGCCTGCCA
CCTGCCCCGTATCCCTATCTGGAGTGGTGCGCCGGTAAAGGCCATCTTGGGAGACTCGTTGGGGCGGTAAGCCACAAGCC
TGTGCTGAGCCTCGAGTGGCAGCAACAGCTGTGCATTGACGGAGAAAAGGAGGCGCAAAAGCGGGGTGTCAACCAACGCT
TTGTCTGTGCCGATGCCTTTTCAGACGAGGCAGAGTTACTCCAGCGTGAGCAGCATGCACTTGCGCTCCACGCCTGCGGT
GAGCTGCATCTGGTGCTGCTAAGGCGCGCCGCCGCAGCCCAAACCCGCGCCATCAGCCTGTCGCCCTGTTGTTACCACCT
TATTCAAGGGGAGCAATACGTGGGGCTCAGCGCCAGCGCCAGAGCCACAGGACTGGTGCTCGATAAGCATGGCCTGCAGC
TCCCCCTCAATCACTCGGTCGTTGCCAGTGCAAAAGAAAAGCAGGACCGCCTGAAGGAAGTTCAGTGGCGCCTGGGGTTC
GACTGCCTGCAGCGCCATTTGCGCCGGGATGACAGCTACTTACCCTTACCCTCGGTGCGCCAAAGCCAGCTCTCCGGCAG
TTTTGATGCCTTTTGCCGCTGGGCCTGTGAGCTTAAAGGCCTGGTGTTGCCCGCGGATTTTTATGCTGATGAATGGTTGG
CCAAAGGATGCCAGCGCCAGCGACTAACCCGGCGATTGGATCTGGTGGCGCACCTCTTCAGGCCTGTGATTGAACAGTAT
CTGCTACTGGACAGGGCCGCATTTTTGTTGGAATCGGGCTACCGTGTGAGCCTCAGTGCGTTCTGTCCCCCTGGGATGAC
GCCCCGTAACGCCCTGATTGACGCCCGTCGTGATTGA

Upstream 100 bases:

>100_bases
ATGCGTGCCTTGTATCCGCCGTTTTTGCATCCGGGAAACTGCAATAAGTCTTTTTGGCTTGTTATAATACCCCTCATCAT
TTTTCAGACCCTCGCCAATC

Downstream 100 bases:

>100_bases
AATAGCGTCACGAAACCGCTTTTATTGGCATTCACCTCTTTCGTTTGCCGTGCCCTTTATCCCCGATTGAAAAGGGACGA
AAAGCCACGGCGTTCTCAGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 438; Mature: 437

Protein sequence:

>438_residues
MSAPALSRAPLPQNAPSSGAEHELQLPQVMSTLAALACVLQQGAALWDFRPFDRQDNPWRLSFPNLWQAIETLNDDCLDA
LDLVQAELCHSLWPALCQDLKVNGLKVWDQSLFLWQLPHHSQASQTLEALPEHDLSRFSAGIKGRKWQQISRFANIVSLP
PAPYPYLEWCAGKGHLGRLVGAVSHKPVLSLEWQQQLCIDGEKEAQKRGVNQRFVCADAFSDEAELLQREQHALALHACG
ELHLVLLRRAAAAQTRAISLSPCCYHLIQGEQYVGLSASARATGLVLDKHGLQLPLNHSVVASAKEKQDRLKEVQWRLGF
DCLQRHLRRDDSYLPLPSVRQSQLSGSFDAFCRWACELKGLVLPADFYADEWLAKGCQRQRLTRRLDLVAHLFRPVIEQY
LLLDRAAFLLESGYRVSLSAFCPPGMTPRNALIDARRD

Sequences:

>Translated_438_residues
MSAPALSRAPLPQNAPSSGAEHELQLPQVMSTLAALACVLQQGAALWDFRPFDRQDNPWRLSFPNLWQAIETLNDDCLDA
LDLVQAELCHSLWPALCQDLKVNGLKVWDQSLFLWQLPHHSQASQTLEALPEHDLSRFSAGIKGRKWQQISRFANIVSLP
PAPYPYLEWCAGKGHLGRLVGAVSHKPVLSLEWQQQLCIDGEKEAQKRGVNQRFVCADAFSDEAELLQREQHALALHACG
ELHLVLLRRAAAAQTRAISLSPCCYHLIQGEQYVGLSASARATGLVLDKHGLQLPLNHSVVASAKEKQDRLKEVQWRLGF
DCLQRHLRRDDSYLPLPSVRQSQLSGSFDAFCRWACELKGLVLPADFYADEWLAKGCQRQRLTRRLDLVAHLFRPVIEQY
LLLDRAAFLLESGYRVSLSAFCPPGMTPRNALIDARRD
>Mature_437_residues
SAPALSRAPLPQNAPSSGAEHELQLPQVMSTLAALACVLQQGAALWDFRPFDRQDNPWRLSFPNLWQAIETLNDDCLDAL
DLVQAELCHSLWPALCQDLKVNGLKVWDQSLFLWQLPHHSQASQTLEALPEHDLSRFSAGIKGRKWQQISRFANIVSLPP
APYPYLEWCAGKGHLGRLVGAVSHKPVLSLEWQQQLCIDGEKEAQKRGVNQRFVCADAFSDEAELLQREQHALALHACGE
LHLVLLRRAAAAQTRAISLSPCCYHLIQGEQYVGLSASARATGLVLDKHGLQLPLNHSVVASAKEKQDRLKEVQWRLGFD
CLQRHLRRDDSYLPLPSVRQSQLSGSFDAFCRWACELKGLVLPADFYADEWLAKGCQRQRLTRRLDLVAHLFRPVIEQYL
LLDRAAFLLESGYRVSLSAFCPPGMTPRNALIDARRD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49222; Mature: 49091

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPALSRAPLPQNAPSSGAEHELQLPQVMSTLAALACVLQQGAALWDFRPFDRQDNPWR
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
LSFPNLWQAIETLNDDCLDALDLVQAELCHSLWPALCQDLKVNGLKVWDQSLFLWQLPHH
ECCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCC
SQASQTLEALPEHDLSRFSAGIKGRKWQQISRFANIVSLPPAPYPYLEWCAGKGHLGRLV
CHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHH
GAVSHKPVLSLEWQQQLCIDGEKEAQKRGVNQRFVCADAFSDEAELLQREQHALALHACG
HHHCCCCEEEECHHHHHCCCCHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH
ELHLVLLRRAAAAQTRAISLSPCCYHLIQGEQYVGLSASARATGLVLDKHGLQLPLNHSV
HHHHHHHHHHHHHHHCEEEECHHHHHHHCCCCEECCCCCCCCCEEEEECCCCCCCCCCHH
VASAKEKQDRLKEVQWRLGFDCLQRHLRRDDSYLPLPSVRQSQLSGSFDAFCRWACELKG
HHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCC
LVLPADFYADEWLAKGCQRQRLTRRLDLVAHLFRPVIEQYLLLDRAAFLLESGYRVSLSA
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
FCPPGMTPRNALIDARRD
CCCCCCCCHHHHCCCCCC
>Mature Secondary Structure 
SAPALSRAPLPQNAPSSGAEHELQLPQVMSTLAALACVLQQGAALWDFRPFDRQDNPWR
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
LSFPNLWQAIETLNDDCLDALDLVQAELCHSLWPALCQDLKVNGLKVWDQSLFLWQLPHH
ECCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCC
SQASQTLEALPEHDLSRFSAGIKGRKWQQISRFANIVSLPPAPYPYLEWCAGKGHLGRLV
CHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHH
GAVSHKPVLSLEWQQQLCIDGEKEAQKRGVNQRFVCADAFSDEAELLQREQHALALHACG
HHHCCCCEEEECHHHHHCCCCHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH
ELHLVLLRRAAAAQTRAISLSPCCYHLIQGEQYVGLSASARATGLVLDKHGLQLPLNHSV
HHHHHHHHHHHHHHHCEEEECHHHHHHHCCCCEECCCCCCCCCEEEEECCCCCCCCCCHH
VASAKEKQDRLKEVQWRLGFDCLQRHLRRDDSYLPLPSVRQSQLSGSFDAFCRWACELKG
HHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCC
LVLPADFYADEWLAKGCQRQRLTRRLDLVAHLFRPVIEQYLLLDRAAFLLESGYRVSLSA
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
FCPPGMTPRNALIDARRD
CCCCCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA