Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774002

Identifier: 119774002

GI number: 119774002

Start: 1056627

End: 1057394

Strand: Direct

Name: 119774002

Synonym: Sama_0865

Alternate gene names: NA

Gene position: 1056627-1057394 (Clockwise)

Preceding gene: 119774001

Following gene: 119774003

Centisome position: 24.54

GC content: 55.99

Gene sequence:

>768_bases
GTGGCGCTGGGGGCCTTTGTTGGCTTTATGGCGGGGCTGCTGGGCATAGGCGGTGGACTCATGATAGTGCCGGCACTGCT
TTACTTGCTGCCAGGCGTTGGATTTTCTGCCGATTATTTGCCACATGTTGCTATTGCGACTTCCCTGTCGGCCATCATTT
TAACTTCCATCTCCTCGGCCCGGGCACACCACGGCCGAGGTAATATTGATTTTCAACTGCTTAAGATATTGGCCCCCGCC
GTTTTACTGGGTGCGTTGGTTTCGGGGTTTGTTGCTGAACAAATTCCGGCGGAACAGCTCAGGCAAGCTTTCGCCATCTT
CGTGATCCTGATGGCTGTGCAAATGGCTTTTCCCTTCAATGCCGCTGCGGCCAAACCCATGCCAAATGGGGGGCTGATAT
TTATCGCCGTGTTTTTTGTCGCCTTACTGGCCGGGTTGATGGGCATTGGTGGTGGGGTGCTGCTGGTGCCCCTGATGATG
TATTTTGGCGTGGCCATGCGCACTGCAGTGGGCGTGTCGGCGGCAACAGGCCTGCTTATTGCGGTGTCCGGCAGTGTCAG
TTATGTGCTGGCCGGTTGGAACACCCAGGGAATGCCTGACTTTACCCTGGGGTACGTGTATCTGCCTGCCTTGCTAGGCA
TAGTGTCTACCTCGATGCTGACCGCTCCTTTGGGGGCCAAAGCCGCCAGCACCTGGCCAACAGCCGTGCTCAAGAAAATT
TTTGCCGTGCTGTTAACCCTGATTGGTCTGCGTCTGGTGATGGGGTGA

Upstream 100 bases:

>100_bases
AATTTAGCATCCCGGACGCGAATGTTTTAAGCTATCGGCCCATCATGGAAATCGGCAAGGTTTAAGTGTGGAACAAATAC
TTTGGGTGATTGGTTGTTGT

Downstream 100 bases:

>100_bases
ACTTTTTCAGCCTACTCAACTCGGTTACCCCGGAACTGACATGCCATTGAATTTTCCCGATATAGATCCAGTCATTGCCA
AGTTTGGGCCCTTTGAGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MALGAFVGFMAGLLGIGGGLMIVPALLYLLPGVGFSADYLPHVAIATSLSAIILTSISSARAHHGRGNIDFQLLKILAPA
VLLGALVSGFVAEQIPAEQLRQAFAIFVILMAVQMAFPFNAAAAKPMPNGGLIFIAVFFVALLAGLMGIGGGVLLVPLMM
YFGVAMRTAVGVSAATGLLIAVSGSVSYVLAGWNTQGMPDFTLGYVYLPALLGIVSTSMLTAPLGAKAASTWPTAVLKKI
FAVLLTLIGLRLVMG

Sequences:

>Translated_255_residues
MALGAFVGFMAGLLGIGGGLMIVPALLYLLPGVGFSADYLPHVAIATSLSAIILTSISSARAHHGRGNIDFQLLKILAPA
VLLGALVSGFVAEQIPAEQLRQAFAIFVILMAVQMAFPFNAAAAKPMPNGGLIFIAVFFVALLAGLMGIGGGVLLVPLMM
YFGVAMRTAVGVSAATGLLIAVSGSVSYVLAGWNTQGMPDFTLGYVYLPALLGIVSTSMLTAPLGAKAASTWPTAVLKKI
FAVLLTLIGLRLVMG
>Mature_254_residues
ALGAFVGFMAGLLGIGGGLMIVPALLYLLPGVGFSADYLPHVAIATSLSAIILTSISSARAHHGRGNIDFQLLKILAPAV
LLGALVSGFVAEQIPAEQLRQAFAIFVILMAVQMAFPFNAAAAKPMPNGGLIFIAVFFVALLAGLMGIGGGVLLVPLMMY
FGVAMRTAVGVSAATGLLIAVSGSVSYVLAGWNTQGMPDFTLGYVYLPALLGIVSTSMLTAPLGAKAASTWPTAVLKKIF
AVLLTLIGLRLVMG

Specific function: Unknown

COG id: COG0730

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0721 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002781 [H]

Pfam domain/function: PF01925 DUF81 [H]

EC number: NA

Molecular weight: Translated: 26135; Mature: 26004

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALGAFVGFMAGLLGIGGGLMIVPALLYLLPGVGFSADYLPHVAIATSLSAIILTSISSA
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RAHHGRGNIDFQLLKILAPAVLLGALVSGFVAEQIPAEQLRQAFAIFVILMAVQMAFPFN
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
AAAAKPMPNGGLIFIAVFFVALLAGLMGIGGGVLLVPLMMYFGVAMRTAVGVSAATGLLI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEE
AVSGSVSYVLAGWNTQGMPDFTLGYVYLPALLGIVSTSMLTAPLGAKAASTWPTAVLKKI
EECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
FAVLLTLIGLRLVMG
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
ALGAFVGFMAGLLGIGGGLMIVPALLYLLPGVGFSADYLPHVAIATSLSAIILTSISSA
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RAHHGRGNIDFQLLKILAPAVLLGALVSGFVAEQIPAEQLRQAFAIFVILMAVQMAFPFN
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
AAAAKPMPNGGLIFIAVFFVALLAGLMGIGGGVLLVPLMMYFGVAMRTAVGVSAATGLLI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEE
AVSGSVSYVLAGWNTQGMPDFTLGYVYLPALLGIVSTSMLTAPLGAKAASTWPTAVLKKI
EECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
FAVLLTLIGLRLVMG
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]