| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is hflX [H]
Identifier: 119773889
GI number: 119773889
Start: 926250
End: 927581
Strand: Direct
Name: hflX [H]
Synonym: Sama_0751
Alternate gene names: 119773889
Gene position: 926250-927581 (Clockwise)
Preceding gene: 119773886
Following gene: 119773891
Centisome position: 21.51
GC content: 58.11
Gene sequence:
>1332_bases ATGCCCCCAATCCAGGAACAAGTTGTAACCCGTGCGCTGCTCATCTCCATCCATACCCCCAACATAGGTGCCAAGGAGGT TGAACGTTCCCTTGCGGAGCTGGCCCGACTGGTGAGCACCCTGGGCTTTGCCGTGTATGCCACCGAGACTCAGAGGCAGC AATCTACCAAGCGCCTGTCGGTGCTTGGCACAGGCAAGCTGGAGCAGCTGGCCCGGATGACAGGCGCCTTGGATGAAGCG GAGGACTCGCTCGTCAACATAGATGAGGCAGGGTTGGAGTCTTTTCTGGCGGGCAACCAGCGCCAGCATGCCAATGTGGT GGTATTCGACTGTGACTTAAGCCCAATGCAGCTTAGAAATCTGGAAGATGCACTTGGGGTTGAGGTGTTCGACCGAAGCG GCATCATCATCGAGATTTTCAGTCGCCATGCCAGCAGTAAAACCGCGCGCTTGCAGGTGGAGCTGGCCCGGCTGAATTAT TTAACTCCCCGGGTTCGCCGTGAGCACGCGGGGGACCGTCAGCGCACCGGCGGACGCAGCGTGGGGGAGAGTGCCATCGA GCTTGAGCGCCGCGCCATTCGTGACAAGCAGGCGGAGCTGAGACGCGAGCTCAAAAAGGTACAGGAGGTAATGCAGGAGC AAAAAAGCAGTCGCATGGATACGCCATCGGCTGCGCTGGTGGGGTATACCAACGCCGGTAAGTCCTCCCTGATGCGAGCG CTGACCGGCTCAGAGGTGCTGGTGGAAAACAAACTCTTTGCCACCCTGGATACCACGGTCAGGGCGCTCTCGCCCCAGAC CCAGCCGCGGATTTTGATTTCGGACACCGTAGGTTTTATCAATAAGCTGCCCCATGATTTGGTGCCGGCGTTTCACTCTA CGCTGGAAGAAGCCAAAGACGCCAGTTTGCTGCTGTATGTGGTGGACGCCAGTGATGCGGATTTTCGCGCACAGCTTGAG GTGGTGCGCAATGTGCTTGGGCAAAGCAAGCTGGCTGGAAAAGATAAGTTACTGCTTTTGAATAAGGTTGACTGCTTAAG CGACGAGGCGCGCTCGGCATTGGCGCAGGAGTTCCCCGATGCGCTTCAAATCAGTGCCTTGAGTCAAGAGGATGTGGCCA GGGTCCATCAGGCTATAGTGGATGCCATCGCCAATCAGCTGCTCAGTGCCTGTTTTAACATTCCCTACGCCGCCAGTGCC CTGATGGGCGAGGTACATGGCAGGATGCAGATCATCGACGAGGCATACCATGAGTCGGGTCTGCGCATCACGGTGCGCGG CCGCAGCGCCGATCTGGACAGGCTGAACAAGCGCTTGCAGACCGGCGGTTGA
Upstream 100 bases:
>100_bases ATTCTTGGGTGTATCTCTCGTATAAAGTCGGCATCACAGCCAGGATATTGTGCTGTGGAGTCTCCCGCCTGAATCAGGTC TGCCCTCGCTGTGAGCCACT
Downstream 100 bases:
>100_bases TACCATGCGAAGCGTTGTTTGATGAGCAGGAGTGGTGTCTCTGCCATTAAAGTGCAAGGGACGCATCCCAACGAAAAGGG CAGCCTGAGCTGCCCTTTAC
Product: GTP-binding protein HflX
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 443; Mature: 442
Protein sequence:
>443_residues MPPIQEQVVTRALLISIHTPNIGAKEVERSLAELARLVSTLGFAVYATETQRQQSTKRLSVLGTGKLEQLARMTGALDEA EDSLVNIDEAGLESFLAGNQRQHANVVVFDCDLSPMQLRNLEDALGVEVFDRSGIIIEIFSRHASSKTARLQVELARLNY LTPRVRREHAGDRQRTGGRSVGESAIELERRAIRDKQAELRRELKKVQEVMQEQKSSRMDTPSAALVGYTNAGKSSLMRA LTGSEVLVENKLFATLDTTVRALSPQTQPRILISDTVGFINKLPHDLVPAFHSTLEEAKDASLLLYVVDASDADFRAQLE VVRNVLGQSKLAGKDKLLLLNKVDCLSDEARSALAQEFPDALQISALSQEDVARVHQAIVDAIANQLLSACFNIPYAASA LMGEVHGRMQIIDEAYHESGLRITVRGRSADLDRLNKRLQTGG
Sequences:
>Translated_443_residues MPPIQEQVVTRALLISIHTPNIGAKEVERSLAELARLVSTLGFAVYATETQRQQSTKRLSVLGTGKLEQLARMTGALDEA EDSLVNIDEAGLESFLAGNQRQHANVVVFDCDLSPMQLRNLEDALGVEVFDRSGIIIEIFSRHASSKTARLQVELARLNY LTPRVRREHAGDRQRTGGRSVGESAIELERRAIRDKQAELRRELKKVQEVMQEQKSSRMDTPSAALVGYTNAGKSSLMRA LTGSEVLVENKLFATLDTTVRALSPQTQPRILISDTVGFINKLPHDLVPAFHSTLEEAKDASLLLYVVDASDADFRAQLE VVRNVLGQSKLAGKDKLLLLNKVDCLSDEARSALAQEFPDALQISALSQEDVARVHQAIVDAIANQLLSACFNIPYAASA LMGEVHGRMQIIDEAYHESGLRITVRGRSADLDRLNKRLQTGG >Mature_442_residues PPIQEQVVTRALLISIHTPNIGAKEVERSLAELARLVSTLGFAVYATETQRQQSTKRLSVLGTGKLEQLARMTGALDEAE DSLVNIDEAGLESFLAGNQRQHANVVVFDCDLSPMQLRNLEDALGVEVFDRSGIIIEIFSRHASSKTARLQVELARLNYL TPRVRREHAGDRQRTGGRSVGESAIELERRAIRDKQAELRRELKKVQEVMQEQKSSRMDTPSAALVGYTNAGKSSLMRAL TGSEVLVENKLFATLDTTVRALSPQTQPRILISDTVGFINKLPHDLVPAFHSTLEEAKDASLLLYVVDASDADFRAQLEV VRNVLGQSKLAGKDKLLLLNKVDCLSDEARSALAQEFPDALQISALSQEDVARVHQAIVDAIANQLLSACFNIPYAASAL MGEVHGRMQIIDEAYHESGLRITVRGRSADLDRLNKRLQTGG
Specific function: Unknown
COG id: COG2262
COG function: function code R; GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI310124269, Length=219, Percent_Identity=32.8767123287671, Blast_Score=106, Evalue=5e-23, Organism=Homo sapiens, GI310124267, Length=219, Percent_Identity=32.8767123287671, Blast_Score=106, Evalue=5e-23, Organism=Homo sapiens, GI310124171, Length=219, Percent_Identity=32.8767123287671, Blast_Score=106, Evalue=5e-23, Organism=Homo sapiens, GI310124169, Length=219, Percent_Identity=32.8767123287671, Blast_Score=106, Evalue=5e-23, Organism=Homo sapiens, GI310133118, Length=219, Percent_Identity=32.8767123287671, Blast_Score=105, Evalue=7e-23, Organism=Homo sapiens, GI310133116, Length=219, Percent_Identity=32.8767123287671, Blast_Score=105, Evalue=9e-23, Organism=Escherichia coli, GI1790615, Length=343, Percent_Identity=35.8600583090379, Blast_Score=196, Evalue=2e-51, Organism=Caenorhabditis elegans, GI17561038, Length=408, Percent_Identity=28.4313725490196, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI24650079, Length=351, Percent_Identity=31.3390313390313, Blast_Score=120, Evalue=2e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR016496 - InterPro: IPR006073 - InterPro: IPR002917 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 48735; Mature: 48604
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPIQEQVVTRALLISIHTPNIGAKEVERSLAELARLVSTLGFAVYATETQRQQSTKRLS CCCHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHH VLGTGKLEQLARMTGALDEAEDSLVNIDEAGLESFLAGNQRQHANVVVFDCDLSPMQLRN EECCCHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHC LEDALGVEVFDRSGIIIEIFSRHASSKTARLQVELARLNYLTPRVRREHAGDRQRTGGRS HHHHHCCEEECCCCCEEEEHHHCCCCCHHEEEEEHHHHHHHCHHHHHHHCCCHHHCCCCH VGESAIELERRAIRDKQAELRRELKKVQEVMQEQKSSRMDTPSAALVGYTNAGKSSLMRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHH LTGSEVLVENKLFATLDTTVRALSPQTQPRILISDTVGFINKLPHDLVPAFHSTLEEAKD HCCCHHEECCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHCCC ASLLLYVVDASDADFRAQLEVVRNVLGQSKLAGKDKLLLLNKVDCLSDEARSALAQEFPD CEEEEEEEECCCCCHHHHHHHHHHHHCCHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCH ALQISALSQEDVARVHQAIVDAIANQLLSACFNIPYAASALMGEVHGRMQIIDEAYHESG HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC LRITVRGRSADLDRLNKRLQTGG CEEEEECCCCCHHHHHHHHHCCC >Mature Secondary Structure PPIQEQVVTRALLISIHTPNIGAKEVERSLAELARLVSTLGFAVYATETQRQQSTKRLS CCHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHH VLGTGKLEQLARMTGALDEAEDSLVNIDEAGLESFLAGNQRQHANVVVFDCDLSPMQLRN EECCCHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHC LEDALGVEVFDRSGIIIEIFSRHASSKTARLQVELARLNYLTPRVRREHAGDRQRTGGRS HHHHHCCEEECCCCCEEEEHHHCCCCCHHEEEEEHHHHHHHCHHHHHHHCCCHHHCCCCH VGESAIELERRAIRDKQAELRRELKKVQEVMQEQKSSRMDTPSAALVGYTNAGKSSLMRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHH LTGSEVLVENKLFATLDTTVRALSPQTQPRILISDTVGFINKLPHDLVPAFHSTLEEAKD HCCCHHEECCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHCCC ASLLLYVVDASDADFRAQLEVVRNVLGQSKLAGKDKLLLLNKVDCLSDEARSALAQEFPD CEEEEEEEECCCCCHHHHHHHHHHHHCCHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCH ALQISALSQEDVARVHQAIVDAIANQLLSACFNIPYAASALMGEVHGRMQIIDEAYHESG HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC LRITVRGRSADLDRLNKRLQTGG CEEEEECCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8248183; 7610040; 9278503; 2020545; 3040675 [H]