| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773429
Identifier: 119773429
GI number: 119773429
Start: 341766
End: 343988
Strand: Reverse
Name: 119773429
Synonym: Sama_0288
Alternate gene names: NA
Gene position: 343988-341766 (Counterclockwise)
Preceding gene: 119773430
Following gene: 119773424
Centisome position: 7.99
GC content: 58.43
Gene sequence:
>2223_bases ATGAACAAATTCCTGTTTGGTCTGCTCCTGACCAGCTGCTCTGCCCTGGGTGGCAACAGCCAGTACGTGAATCCCTTTAT CGGTACCTCAAACTTCGGCGCTACCCATCCCGGGGCTCAGTACCCCAATGCCCTGGCCTCGGTGTCGCCGTTCAACGTGG CCCATGGCGGCGAGCAAAATAAGTTTGAAAAAGACGCCGCCTGGAACTCCCGGGTGTATATCCATGAGAACCGCTATCTG ACGGGCTTCAGCCACCTGAACTTAAGCGGCGTGGGTTGCCCCGATGCAGGCGTATTGCTACTGATGCCCACCACGGGCCC GCTCGAACTGGACGCACGGGAATACGGCAGCAGTTACAGCAATGAGCAAGCCAGCCCCGGCTACTATAGCGCCCAGCTCA ACAAATACGCCGTCAAGGCCGAAGTCACCAGCAGCCTGCGCACCGGCCTGAGCCGCTTCACCTTTCCGGCGGGGCAGTCC AATGTGCTGCTCAATCTGGGGCTGGGACTGACCAATGAAACCGGCGCCAGCCTTAAGTGGGTGTCTGAGCAGGAAGTCGA AGGCAGCCGTATGCTGGGCACCTTCTGCTACCACGACGAAGATGTGCGGCCGGTATTTTTTGTGGCCCGCTTCAGCAAGG CACCCAAGACCTTTGGGGTGTGGAAAAAAATGCCGCGCTACCAGAATGTGGAAGCCGACTGGATTGGCTACAACGACAGC ATTAAACCCTATCCGGGCTATCGTCAGCTCCTGTCCGGCGATGATATCGGTGCCTGGCTGAGCTTCGATACCCGCGAGCA GGAGGCCATCGAGGTCAAGCTGGGCATCTCCTTTGTCAGCATGGAAAACGCTAGGGAGAATCTGGATACCGAGCAGCCCG GGTTTGAGTTCGATAAGCTGCGGATTGAGGCGCAAAAGGCCTGGGACGCCCTGCTGGACCGGGTCGAGGTGGAGGGCAGT GATGAGCAAAAAACCTTGTTCTACACCGCGCTGTACCACAGCCTTATTCATCCCAACATATTGCAGGATGCCAACGGCGA TTACCCCTTGATGGGCCAGCAGGGCGTTGGCAACAGCAAGCAAAACCGCTACACGGTGTACTCGCTTTGGGATACCCACA GAAACGTTCATCCCCTGCTGAGCCTGCTCTATCCCGAATTACAGGCCGATATGGTGCGCTCGGCAGTGGCCATGGCCAAA GAGAGTGGCTGGCTGCCCAAGTGGGAGCTCTACGGCATGGAAACCCAGGTGATGGTGGGCGATCCCGCCACGGCCATGAT TGCCGACAGCTACCTGCGCGGCATCCGGGATTTCGATGTCAATGCCGCCTATGGGGCCATGGTGCGGGCAGCAGAGCAGC GCGAGCACAACCTGCTGCGGCCGGAAAACCCGGATTATCTGACGCTCGGCTATGTGCCAGTGGACGATGAAGGCCCCTAC GATGGCAGCGTGGCCACCAGCCTGGAATACTACCTGGCCGACTTCAACCTGGCACAACTGGCATTGGCGCTGGGTAAGCA GGAGGACCACGATAAGTACCTGGCCCGGGCACTGAACTACCGCACATTGTTTGATGCCGACACCGGCATGCTCAGGCCGA AAAATAGAAAAGGCGAATGGCTGACACCCTTCGACCCCGAGCTTGGCCGTAACTTCGAGCCCGCCCCCGGCTATATCGAA GGCAATGCCTGGAATTATCGCTTTTATGTGCCCCACGATACCCCCGGGCTGATACAGCTGCTCGGCGGGCCGGAAGCCTT TTTACGCCAACTGGACGCCACCTTCGACACCGGTAACTTCGATATGGGCAACGAGCCCGATATCACTTATCCCTTCCTGT ACAACTACCTGGAAGGTCAGAGCTGGCGCACCTCCCGGCGTGTCAGGGAGCTGATTGCGGCACACTTTGGCAATCATCCC GGCGGCCTGCCCGGCAACGACGACACGGGCACCATGTCCACCTGGCTCGCGTTTTCCATGTTGGGCATTTACCCGGTGAG CCCCGGCATGATGGACTACGCCCTGTTCCGCCCAAGCTTCAGCAAGGTGAAGATTCACCTCAGCGCCGAATACTATCCCG GTAAGCAGTTTGTGATTGAAAACCCTGTCGGTGACCTTGACTCGGATAAGCCCGAAGCCTTCACACTAAACGGCCGCAGC ATCGACAAACCCTTTGTGACCCATGAGGACATCATCAAGGGCGGCGTGCTCAAGGTGAAGTAG
Upstream 100 bases:
>100_bases AGCAGGTCACCTTGAACGGCAAGCCCTTGAACGGATATATTTTACGACATTCAGATATTCTGGCCGGTGGTGAACTGGTC TTTACCATGAGCCCTCAGCC
Downstream 100 bases:
>100_bases CCCCATATAAAGACAAAAAAGCCGCCCGAGGGCGGCTTTTTTATTGTCAGCTTAATTCACTCTCGTCACTGTCAGACTGG GTGCCTTGGGGTCCGGACCT
Product: putative alpha-1,2-mannosidase
Products: NA
Alternate protein names: Alpha-1 2-Mannosidase Family Protein; Glycoside Hydrolase Family; Glycosyl Hydrolase Family; Sugar Hydrolase; Secreted Protein; Glycoside Hydrolase Family Protein; Outer Membrane Protein; Immunoreactive; Exported Alpha-1 2-Mannosidase; Antigen; Alpha-1 2-Mannosidase Protein; Lipoprotein
Number of amino acids: Translated: 740; Mature: 740
Protein sequence:
>740_residues MNKFLFGLLLTSCSALGGNSQYVNPFIGTSNFGATHPGAQYPNALASVSPFNVAHGGEQNKFEKDAAWNSRVYIHENRYL TGFSHLNLSGVGCPDAGVLLLMPTTGPLELDAREYGSSYSNEQASPGYYSAQLNKYAVKAEVTSSLRTGLSRFTFPAGQS NVLLNLGLGLTNETGASLKWVSEQEVEGSRMLGTFCYHDEDVRPVFFVARFSKAPKTFGVWKKMPRYQNVEADWIGYNDS IKPYPGYRQLLSGDDIGAWLSFDTREQEAIEVKLGISFVSMENARENLDTEQPGFEFDKLRIEAQKAWDALLDRVEVEGS DEQKTLFYTALYHSLIHPNILQDANGDYPLMGQQGVGNSKQNRYTVYSLWDTHRNVHPLLSLLYPELQADMVRSAVAMAK ESGWLPKWELYGMETQVMVGDPATAMIADSYLRGIRDFDVNAAYGAMVRAAEQREHNLLRPENPDYLTLGYVPVDDEGPY DGSVATSLEYYLADFNLAQLALALGKQEDHDKYLARALNYRTLFDADTGMLRPKNRKGEWLTPFDPELGRNFEPAPGYIE GNAWNYRFYVPHDTPGLIQLLGGPEAFLRQLDATFDTGNFDMGNEPDITYPFLYNYLEGQSWRTSRRVRELIAAHFGNHP GGLPGNDDTGTMSTWLAFSMLGIYPVSPGMMDYALFRPSFSKVKIHLSAEYYPGKQFVIENPVGDLDSDKPEAFTLNGRS IDKPFVTHEDIIKGGVLKVK
Sequences:
>Translated_740_residues MNKFLFGLLLTSCSALGGNSQYVNPFIGTSNFGATHPGAQYPNALASVSPFNVAHGGEQNKFEKDAAWNSRVYIHENRYL TGFSHLNLSGVGCPDAGVLLLMPTTGPLELDAREYGSSYSNEQASPGYYSAQLNKYAVKAEVTSSLRTGLSRFTFPAGQS NVLLNLGLGLTNETGASLKWVSEQEVEGSRMLGTFCYHDEDVRPVFFVARFSKAPKTFGVWKKMPRYQNVEADWIGYNDS IKPYPGYRQLLSGDDIGAWLSFDTREQEAIEVKLGISFVSMENARENLDTEQPGFEFDKLRIEAQKAWDALLDRVEVEGS DEQKTLFYTALYHSLIHPNILQDANGDYPLMGQQGVGNSKQNRYTVYSLWDTHRNVHPLLSLLYPELQADMVRSAVAMAK ESGWLPKWELYGMETQVMVGDPATAMIADSYLRGIRDFDVNAAYGAMVRAAEQREHNLLRPENPDYLTLGYVPVDDEGPY DGSVATSLEYYLADFNLAQLALALGKQEDHDKYLARALNYRTLFDADTGMLRPKNRKGEWLTPFDPELGRNFEPAPGYIE GNAWNYRFYVPHDTPGLIQLLGGPEAFLRQLDATFDTGNFDMGNEPDITYPFLYNYLEGQSWRTSRRVRELIAAHFGNHP GGLPGNDDTGTMSTWLAFSMLGIYPVSPGMMDYALFRPSFSKVKIHLSAEYYPGKQFVIENPVGDLDSDKPEAFTLNGRS IDKPFVTHEDIIKGGVLKVK >Mature_740_residues MNKFLFGLLLTSCSALGGNSQYVNPFIGTSNFGATHPGAQYPNALASVSPFNVAHGGEQNKFEKDAAWNSRVYIHENRYL TGFSHLNLSGVGCPDAGVLLLMPTTGPLELDAREYGSSYSNEQASPGYYSAQLNKYAVKAEVTSSLRTGLSRFTFPAGQS NVLLNLGLGLTNETGASLKWVSEQEVEGSRMLGTFCYHDEDVRPVFFVARFSKAPKTFGVWKKMPRYQNVEADWIGYNDS IKPYPGYRQLLSGDDIGAWLSFDTREQEAIEVKLGISFVSMENARENLDTEQPGFEFDKLRIEAQKAWDALLDRVEVEGS DEQKTLFYTALYHSLIHPNILQDANGDYPLMGQQGVGNSKQNRYTVYSLWDTHRNVHPLLSLLYPELQADMVRSAVAMAK ESGWLPKWELYGMETQVMVGDPATAMIADSYLRGIRDFDVNAAYGAMVRAAEQREHNLLRPENPDYLTLGYVPVDDEGPY DGSVATSLEYYLADFNLAQLALALGKQEDHDKYLARALNYRTLFDADTGMLRPKNRKGEWLTPFDPELGRNFEPAPGYIE GNAWNYRFYVPHDTPGLIQLLGGPEAFLRQLDATFDTGNFDMGNEPDITYPFLYNYLEGQSWRTSRRVRELIAAHFGNHP GGLPGNDDTGTMSTWLAFSMLGIYPVSPGMMDYALFRPSFSKVKIHLSAEYYPGKQFVIENPVGDLDSDKPEAFTLNGRS IDKPFVTHEDIIKGGVLKVK
Specific function: Unknown
COG id: COG3537
COG function: function code G; Putative alpha-1,2-mannosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 82774; Mature: 82774
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKFLFGLLLTSCSALGGNSQYVNPFIGTSNFGATHPGAQYPNALASVSPFNVAHGGEQN CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC KFEKDAAWNSRVYIHENRYLTGFSHLNLSGVGCPDAGVLLLMPTTGPLELDAREYGSSYS CCCCCCCCCCEEEEECCCEEEEECCCEECCCCCCCCCEEEEECCCCCCEECHHHHCCCCC NEQASPGYYSAQLNKYAVKAEVTSSLRTGLSRFTFPAGQSNVLLNLGLGLTNETGASLKW CCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEE VSEQEVEGSRMLGTFCYHDEDVRPVFFVARFSKAPKTFGVWKKMPRYQNVEADWIGYNDS CCHHHCCCCCEEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCEEEECCCCC IKPYPGYRQLLSGDDIGAWLSFDTREQEAIEVKLGISFVSMENARENLDTEQPGFEFDKL CCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEEEEEEEEHHHHHHCCCCCCCCCCHHHE RIEAQKAWDALLDRVEVEGSDEQKTLFYTALYHSLIHPNILQDANGDYPLMGQQGVGNSK EEEHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCC QNRYTVYSLWDTHRNVHPLLSLLYPELQADMVRSAVAMAKESGWLPKWELYGMETQVMVG CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEEC DPATAMIADSYLRGIRDFDVNAAYGAMVRAAEQREHNLLRPENPDYLTLGYVPVDDEGPY CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCC DGSVATSLEYYLADFNLAQLALALGKQEDHDKYLARALNYRTLFDADTGMLRPKNRKGEW CCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCC LTPFDPELGRNFEPAPGYIEGNAWNYRFYVPHDTPGLIQLLGGPEAFLRQLDATFDTGNF CCCCCHHHCCCCCCCCCEEECCEEEEEEECCCCCCCCEEECCCHHHHHHHHHCCCCCCCC DMGNEPDITYPFLYNYLEGQSWRTSRRVRELIAAHFGNHPGGLPGNDDTGTMSTWLAFSM CCCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH LGIYPVSPGMMDYALFRPSFSKVKIHLSAEYYPGKQFVIENPVGDLDSDKPEAFTLNGRS HHCEECCCCHHHHHHHCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEEECCCC IDKPFVTHEDIIKGGVLKVK CCCCCCCHHHHHCCCCEEEC >Mature Secondary Structure MNKFLFGLLLTSCSALGGNSQYVNPFIGTSNFGATHPGAQYPNALASVSPFNVAHGGEQN CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC KFEKDAAWNSRVYIHENRYLTGFSHLNLSGVGCPDAGVLLLMPTTGPLELDAREYGSSYS CCCCCCCCCCEEEEECCCEEEEECCCEECCCCCCCCCEEEEECCCCCCEECHHHHCCCCC NEQASPGYYSAQLNKYAVKAEVTSSLRTGLSRFTFPAGQSNVLLNLGLGLTNETGASLKW CCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEE VSEQEVEGSRMLGTFCYHDEDVRPVFFVARFSKAPKTFGVWKKMPRYQNVEADWIGYNDS CCHHHCCCCCEEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCEEEECCCCC IKPYPGYRQLLSGDDIGAWLSFDTREQEAIEVKLGISFVSMENARENLDTEQPGFEFDKL CCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEEEEEEEEHHHHHHCCCCCCCCCCHHHE RIEAQKAWDALLDRVEVEGSDEQKTLFYTALYHSLIHPNILQDANGDYPLMGQQGVGNSK EEEHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCC QNRYTVYSLWDTHRNVHPLLSLLYPELQADMVRSAVAMAKESGWLPKWELYGMETQVMVG CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEEC DPATAMIADSYLRGIRDFDVNAAYGAMVRAAEQREHNLLRPENPDYLTLGYVPVDDEGPY CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCC DGSVATSLEYYLADFNLAQLALALGKQEDHDKYLARALNYRTLFDADTGMLRPKNRKGEW CCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCC LTPFDPELGRNFEPAPGYIEGNAWNYRFYVPHDTPGLIQLLGGPEAFLRQLDATFDTGNF CCCCCHHHCCCCCCCCCEEECCEEEEEEECCCCCCCCEEECCCHHHHHHHHHCCCCCCCC DMGNEPDITYPFLYNYLEGQSWRTSRRVRELIAAHFGNHPGGLPGNDDTGTMSTWLAFSM CCCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH LGIYPVSPGMMDYALFRPSFSKVKIHLSAEYYPGKQFVIENPVGDLDSDKPEAFTLNGRS HHCEECCCCHHHHHHHCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEEECCCC IDKPFVTHEDIIKGGVLKVK CCCCCCCHHHHHCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA