| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773430
Identifier: 119773430
GI number: 119773430
Start: 343985
End: 346240
Strand: Reverse
Name: 119773430
Synonym: Sama_0289
Alternate gene names: NA
Gene position: 346240-343985 (Counterclockwise)
Preceding gene: 119773431
Following gene: 119773429
Centisome position: 8.04
GC content: 56.56
Gene sequence:
>2256_bases ATGAAAAAGATTGCCGCACTGCTGCTGACCGCGTCCCTGGCAGCATGCAACCAGCAACCCAGCCAGGTGCAAAGCCACGA ACAACAAAAGCCCACCAGCCAGTCACAAATGGAGCACGCTGCGGATGTGCTCGCCTATGTTGACCCCTTTATCGGCACCG ATGGCAAGGGTAAAACCTTCCCCGGTGCTACCGTGCCCCATGGCATGGTGCAGCTCAGCCCCGACAATGGCCGCACCGGC TGGGACTGGATAGCGGGCTACTTCTATCCCGACAACATCATTGCCGGCTTCAGCCACACCCATTTGTCCGGCACAGGTGC CGGGGATCTGTATGACATCTCCTTTATGCCCCTGACCCGGCCTTTCAAGCGGGTGCAAACCGAGGGCGGTCCGGCCGACG GCACCATAGTGTCCCATTTCAGCCACGAGCAAGAGCAGGCCAGCCCCGGTTATTACCGGGTCAGATTGCAGGACTACGAA ATCAAGGTGGAGCTGACCGCAGGTGCGCGCTCCGGCCTGCAAAGATACAGTTTTCCGACCACGGCCACCGAAGGTGTGGT GCGGCTCGATTTGGGTTATAGCCGCAACTGGGACAAAACCGTTGCCACCCATGTTGAAATCATCGATGCCTACAGCATTG GCGGGTATCGCAAATCCACCGGTTGGGCCGAGGATCAGCGGGTCTATTTTTACAGCCGTTTTTCACAGCCCATCGCCAGT CAGCTGTTGTTTGTCGATGGCAAACAGGTCTCCCACACACAGGCTGAGGCCGACAATATCGCGCTTGAGCTCAACTTCGA TTTGGCCCAGAGCCAATCAAAGGACAGGTCTTTACTGGTGCACACCGCCATCAGCTCGGTGAGCATAGATAATGCACTGG CAAACCTTGAGGCCGACGGCAAGCTGCTGGATTTCCCGGGCACCCTGGCCGCCGCCAAAGATGCCTGGCGTGGTGAGCTT GCCAAAGTTCGGGTGTCGGCATCCGAGGATAACCTCAGGCAGTTTTATACCGCCATGTACCATGCCTCACTCGCCCCACG ACTCTTCTCGGATACCGATGGCAGCTACAAGGGGCCGGATGGCGCAATCCATCAAGCCGAAGGCCATCCACGCTACGAAT TCTTCTCCCTGTGGGATACCTTCAGGGCGCTGCACCCCTGGAAAACCCTTGTCGACCAGGCTCGCACCCGGGAGATGATG GACAGCATGATGGACCATTACCGGGTAGCCGGGCGTTTACCCGTGTGGATTTTTCAGGGCAATGAAACCGACATGATGCT GGGCTACCACTCGGTGCCGGTATTGGTCGATGCCTATCTGAAGGGCCTTACCGATATTGATGGCGAACACTTGCTTAATG CCGCCCTGCACAGTGCAAAGCAAGAGGCTTTTGGCCTGGCGAGTTACCAGCAGCTGGGTTTTGTGCCCTACACAGAGCGC AAGTGGAATGTGGCCCTGACGCTAGAATATGCCTTCGATGACTGGGCTATCGCACGCCTCGCCAAAGCCTTGGGTAAAGA AGATATTTATCAGGAATTTGCCACACGGTCACAGAACTATCGCCGCCATTTTGACGCCCAAACCGGCTTTATGCGCGCCC TGGATCCCCATGGGCAATTCCGTCTCCCCTTCGACCCCAATGCCTATCACCCGGAAGACTACTGTGAGGCCAATGCCTGG CAATACAGCTTCTTTGTACCCCACGATGTGGCGGGCATGATTGAAATGATGGGCGGCAGCGCCGCTGTCAGCGCCAAACT GGATGCCATGTTCGGTACCGAGCAGGCGCTGGACGAGTTCCCCGAATGGATCTCCGGCTATATCGGCCAGTATGTCCACG GCAACGAGCCCAGCCACCATGTGCCCTACCTCTATCAATATCTGGGCGAAGCACATAAGACCCAGCGTCTGGTGCGGCAG ATAATGCACGAGCTTTACACCACGGCGCCCGATGGACTGGCCGGCAACGAAGATGCCGGCCAAATGTCGGCCTGGTACCT CTTCAGTGCGCTGGGCTTTTACCCCGTGGACCCGGTATCCGGTGAATATGTGCTTGGCAGCCCCGAGGTCGACAGCGCCG ATATCCAGCTTGAAAATGGTAACGTCTTTAAAATTCGTACAATTAATCAAGGACCTGAACATGTCTATGTCAAGCAGGTC ACCTTGAACGGCAAGCCCTTGAACGGATATATTTTACGACATTCAGATATTCTGGCCGGTGGTGAACTGGTCTTTACCAT GAGCCCTCAGCCATGA
Upstream 100 bases:
>100_bases CTTCGAAGTCTTGCGCGTGCTGGGCCACCCGGCACTGAAATAAACCGACCATAAGGCCCGTGGATGCGGGCCTTTGCTTA CCTGACTCCATGAGGATGTG
Downstream 100 bases:
>100_bases ACAAATTCCTGTTTGGTCTGCTCCTGACCAGCTGCTCTGCCCTGGGTGGCAACAGCCAGTACGTGAATCCCTTTATCGGT ACCTCAAACTTCGGCGCTAC
Product: putative alpha-1,2-mannosidase
Products: NA
Alternate protein names: Alpha-1 2-Mannosidase Family Protein; Glycoside Hydrolase Family; Sugar Hydrolase; Glycosyl Hydrolase Family; Secreted Protein; Glycoside Hydrolase Family Protein; Outer Membrane Protein; Immunoreactive; Exported Alpha-1 2-Mannosidase; Antigen; Alpha-1 2-Mannosidase Protein; Lipoprotein
Number of amino acids: Translated: 751; Mature: 751
Protein sequence:
>751_residues MKKIAALLLTASLAACNQQPSQVQSHEQQKPTSQSQMEHAADVLAYVDPFIGTDGKGKTFPGATVPHGMVQLSPDNGRTG WDWIAGYFYPDNIIAGFSHTHLSGTGAGDLYDISFMPLTRPFKRVQTEGGPADGTIVSHFSHEQEQASPGYYRVRLQDYE IKVELTAGARSGLQRYSFPTTATEGVVRLDLGYSRNWDKTVATHVEIIDAYSIGGYRKSTGWAEDQRVYFYSRFSQPIAS QLLFVDGKQVSHTQAEADNIALELNFDLAQSQSKDRSLLVHTAISSVSIDNALANLEADGKLLDFPGTLAAAKDAWRGEL AKVRVSASEDNLRQFYTAMYHASLAPRLFSDTDGSYKGPDGAIHQAEGHPRYEFFSLWDTFRALHPWKTLVDQARTREMM DSMMDHYRVAGRLPVWIFQGNETDMMLGYHSVPVLVDAYLKGLTDIDGEHLLNAALHSAKQEAFGLASYQQLGFVPYTER KWNVALTLEYAFDDWAIARLAKALGKEDIYQEFATRSQNYRRHFDAQTGFMRALDPHGQFRLPFDPNAYHPEDYCEANAW QYSFFVPHDVAGMIEMMGGSAAVSAKLDAMFGTEQALDEFPEWISGYIGQYVHGNEPSHHVPYLYQYLGEAHKTQRLVRQ IMHELYTTAPDGLAGNEDAGQMSAWYLFSALGFYPVDPVSGEYVLGSPEVDSADIQLENGNVFKIRTINQGPEHVYVKQV TLNGKPLNGYILRHSDILAGGELVFTMSPQP
Sequences:
>Translated_751_residues MKKIAALLLTASLAACNQQPSQVQSHEQQKPTSQSQMEHAADVLAYVDPFIGTDGKGKTFPGATVPHGMVQLSPDNGRTG WDWIAGYFYPDNIIAGFSHTHLSGTGAGDLYDISFMPLTRPFKRVQTEGGPADGTIVSHFSHEQEQASPGYYRVRLQDYE IKVELTAGARSGLQRYSFPTTATEGVVRLDLGYSRNWDKTVATHVEIIDAYSIGGYRKSTGWAEDQRVYFYSRFSQPIAS QLLFVDGKQVSHTQAEADNIALELNFDLAQSQSKDRSLLVHTAISSVSIDNALANLEADGKLLDFPGTLAAAKDAWRGEL AKVRVSASEDNLRQFYTAMYHASLAPRLFSDTDGSYKGPDGAIHQAEGHPRYEFFSLWDTFRALHPWKTLVDQARTREMM DSMMDHYRVAGRLPVWIFQGNETDMMLGYHSVPVLVDAYLKGLTDIDGEHLLNAALHSAKQEAFGLASYQQLGFVPYTER KWNVALTLEYAFDDWAIARLAKALGKEDIYQEFATRSQNYRRHFDAQTGFMRALDPHGQFRLPFDPNAYHPEDYCEANAW QYSFFVPHDVAGMIEMMGGSAAVSAKLDAMFGTEQALDEFPEWISGYIGQYVHGNEPSHHVPYLYQYLGEAHKTQRLVRQ IMHELYTTAPDGLAGNEDAGQMSAWYLFSALGFYPVDPVSGEYVLGSPEVDSADIQLENGNVFKIRTINQGPEHVYVKQV TLNGKPLNGYILRHSDILAGGELVFTMSPQP >Mature_751_residues MKKIAALLLTASLAACNQQPSQVQSHEQQKPTSQSQMEHAADVLAYVDPFIGTDGKGKTFPGATVPHGMVQLSPDNGRTG WDWIAGYFYPDNIIAGFSHTHLSGTGAGDLYDISFMPLTRPFKRVQTEGGPADGTIVSHFSHEQEQASPGYYRVRLQDYE IKVELTAGARSGLQRYSFPTTATEGVVRLDLGYSRNWDKTVATHVEIIDAYSIGGYRKSTGWAEDQRVYFYSRFSQPIAS QLLFVDGKQVSHTQAEADNIALELNFDLAQSQSKDRSLLVHTAISSVSIDNALANLEADGKLLDFPGTLAAAKDAWRGEL AKVRVSASEDNLRQFYTAMYHASLAPRLFSDTDGSYKGPDGAIHQAEGHPRYEFFSLWDTFRALHPWKTLVDQARTREMM DSMMDHYRVAGRLPVWIFQGNETDMMLGYHSVPVLVDAYLKGLTDIDGEHLLNAALHSAKQEAFGLASYQQLGFVPYTER KWNVALTLEYAFDDWAIARLAKALGKEDIYQEFATRSQNYRRHFDAQTGFMRALDPHGQFRLPFDPNAYHPEDYCEANAW QYSFFVPHDVAGMIEMMGGSAAVSAKLDAMFGTEQALDEFPEWISGYIGQYVHGNEPSHHVPYLYQYLGEAHKTQRLVRQ IMHELYTTAPDGLAGNEDAGQMSAWYLFSALGFYPVDPVSGEYVLGSPEVDSADIQLENGNVFKIRTINQGPEHVYVKQV TLNGKPLNGYILRHSDILAGGELVFTMSPQP
Specific function: Unknown
COG id: COG3537
COG function: function code G; Putative alpha-1,2-mannosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83814; Mature: 83814
Theoretical pI: Translated: 5.43; Mature: 5.43
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIAALLLTASLAACNQQPSQVQSHEQQKPTSQSQMEHAADVLAYVDPFIGTDGKGKTF CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC PGATVPHGMVQLSPDNGRTGWDWIAGYFYPDNIIAGFSHTHLSGTGAGDLYDISFMPLTR CCCCCCCCEEEECCCCCCCCHHHEEEEEECCCEEECCCCCCCCCCCCCCEEEEEECCCCC PFKRVQTEGGPADGTIVSHFSHEQEQASPGYYRVRLQDYEIKVELTAGARSGLQRYSFPT HHHHHHCCCCCCCCCEEECCCCHHHHCCCCEEEEEEEEEEEEEEEECCCHHCHHHCCCCC TATEGVVRLDLGYSRNWDKTVATHVEIIDAYSIGGYRKSTGWAEDQRVYFYSRFSQPIAS CCCCCEEEEECCCCCCCCHHHHHHEEEEEEEECCCEECCCCCCCCCEEEEEEHHCCHHHH QLLFVDGKQVSHTQAEADNIALELNFDLAQSQSKDRSLLVHTAISSVSIDNALANLEADG HEEEECCCCCCCCCCCCCCEEEEEECCHHCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCC KLLDFPGTLAAAKDAWRGELAKVRVSASEDNLRQFYTAMYHASLAPRLFSDTDGSYKGPD EEEECCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCC GAIHQAEGHPRYEFFSLWDTFRALHPWKTLVDQARTREMMDSMMDHYRVAGRLPVWIFQG CCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC NETDMMLGYHSVPVLVDAYLKGLTDIDGEHLLNAALHSAKQEAFGLASYQQLGFVPYTER CCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCC KWNVALTLEYAFDDWAIARLAKALGKEDIYQEFATRSQNYRRHFDAQTGFMRALDPHGQF CEEEEEEEEECCCHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCCCCCE RLPFDPNAYHPEDYCEANAWQYSFFVPHDVAGMIEMMGGSAAVSAKLDAMFGTEQALDEF ECCCCCCCCCCHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEHHHHHHCCHHHHHHH PEWISGYIGQYVHGNEPSHHVPYLYQYLGEAHKTQRLVRQIMHELYTTAPDGLAGNEDAG HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC QMSAWYLFSALGFYPVDPVSGEYVLGSPEVDSADIQLENGNVFKIRTINQGPEHVYVKQV HHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCEEEECCCCEEEEEECCCCCCEEEEEEE TLNGKPLNGYILRHSDILAGGELVFTMSPQP EECCCCCCCEEEECCCEEECCEEEEEECCCC >Mature Secondary Structure MKKIAALLLTASLAACNQQPSQVQSHEQQKPTSQSQMEHAADVLAYVDPFIGTDGKGKTF CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC PGATVPHGMVQLSPDNGRTGWDWIAGYFYPDNIIAGFSHTHLSGTGAGDLYDISFMPLTR CCCCCCCCEEEECCCCCCCCHHHEEEEEECCCEEECCCCCCCCCCCCCCEEEEEECCCCC PFKRVQTEGGPADGTIVSHFSHEQEQASPGYYRVRLQDYEIKVELTAGARSGLQRYSFPT HHHHHHCCCCCCCCCEEECCCCHHHHCCCCEEEEEEEEEEEEEEEECCCHHCHHHCCCCC TATEGVVRLDLGYSRNWDKTVATHVEIIDAYSIGGYRKSTGWAEDQRVYFYSRFSQPIAS CCCCCEEEEECCCCCCCCHHHHHHEEEEEEEECCCEECCCCCCCCCEEEEEEHHCCHHHH QLLFVDGKQVSHTQAEADNIALELNFDLAQSQSKDRSLLVHTAISSVSIDNALANLEADG HEEEECCCCCCCCCCCCCCEEEEEECCHHCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCC KLLDFPGTLAAAKDAWRGELAKVRVSASEDNLRQFYTAMYHASLAPRLFSDTDGSYKGPD EEEECCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCC GAIHQAEGHPRYEFFSLWDTFRALHPWKTLVDQARTREMMDSMMDHYRVAGRLPVWIFQG CCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC NETDMMLGYHSVPVLVDAYLKGLTDIDGEHLLNAALHSAKQEAFGLASYQQLGFVPYTER CCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCC KWNVALTLEYAFDDWAIARLAKALGKEDIYQEFATRSQNYRRHFDAQTGFMRALDPHGQF CEEEEEEEEECCCHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCCCCCE RLPFDPNAYHPEDYCEANAWQYSFFVPHDVAGMIEMMGGSAAVSAKLDAMFGTEQALDEF ECCCCCCCCCCHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEHHHHHHCCHHHHHHH PEWISGYIGQYVHGNEPSHHVPYLYQYLGEAHKTQRLVRQIMHELYTTAPDGLAGNEDAG HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC QMSAWYLFSALGFYPVDPVSGEYVLGSPEVDSADIQLENGNVFKIRTINQGPEHVYVKQV HHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCEEEECCCCEEEEEECCCCCCEEEEEEE TLNGKPLNGYILRHSDILAGGELVFTMSPQP EECCCCCCCEEEECCCEEECCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA