Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119773305

Identifier: 119773305

GI number: 119773305

Start: 193206

End: 193613

Strand: Reverse

Name: 119773305

Synonym: Sama_0163

Alternate gene names: NA

Gene position: 193613-193206 (Counterclockwise)

Preceding gene: 119773306

Following gene: 119773304

Centisome position: 4.5

GC content: 54.17

Gene sequence:

>408_bases
ATGTACAAAGGGAGTTGTTTGTGCGGCGCTATCCATTACACCCTTAACGGGGCCATCAGCGACATTATTCATTGTCACTG
TTCCCTGTGCCGCAAATCCACCGGCAGCGCTTATGCCACCAACGGTTTTATCGCAGCAAGCGATCTGCACCTCAGTGATG
CTGACAATAAGCTGACCTTCTACGAAAGCGAGCCGGGCAAGCGGAAATATTTTTGTCAGGTTTGCGCCTCGCCGATTTAC
AGCGCCAACGCCAAATACCCGGGCCGTTATCGCCTGCGAATCGGCTCCCTCGACTCCGACATTATCGAGCGCCCCCTATC
CCATAATTTTATTACCTCAAAGGCCAACTGGGACGACCCTGATGCCGAGCTCCCCCGCTACGCGGCGTTTGAGCCTTCAC
GCAAGTAA

Upstream 100 bases:

>100_bases
GCGCAAGCCATCCGACGGTTTATCTGCTTTAGGCAATCCTGATACAAGGTTAAGATAATGAGCCACCCTGGCTCATACTT
ATCAGATTGCAGAGGACCTT

Downstream 100 bases:

>100_bases
GGGTTAATCCATCCTGTGTGCTATGGCTGGAATACCAAGGACAGGGGCATACCCTAGCCTTGGTTCCCGGCGACACAATT
CAGACTGGCGCTGACTGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: Glutathione-Dependent Formaldehyde-Activating Protein; ADP-Ribosylglycohydrolase Family Protein; Glutathione-Dependent Formaldehyde-Activating Gfa; ATPase; Glutathione-Dependent Formaldehyde-Activating; Glutathione-Dependent Formaldehyde-Activating Family

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MYKGSCLCGAIHYTLNGAISDIIHCHCSLCRKSTGSAYATNGFIAASDLHLSDADNKLTFYESEPGKRKYFCQVCASPIY
SANAKYPGRYRLRIGSLDSDIIERPLSHNFITSKANWDDPDAELPRYAAFEPSRK

Sequences:

>Translated_135_residues
MYKGSCLCGAIHYTLNGAISDIIHCHCSLCRKSTGSAYATNGFIAASDLHLSDADNKLTFYESEPGKRKYFCQVCASPIY
SANAKYPGRYRLRIGSLDSDIIERPLSHNFITSKANWDDPDAELPRYAAFEPSRK
>Mature_135_residues
MYKGSCLCGAIHYTLNGAISDIIHCHCSLCRKSTGSAYATNGFIAASDLHLSDADNKLTFYESEPGKRKYFCQVCASPIY
SANAKYPGRYRLRIGSLDSDIIERPLSHNFITSKANWDDPDAELPRYAAFEPSRK

Specific function: Unknown

COG id: COG3791

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15022; Mature: 15022

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
5.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKGSCLCGAIHYTLNGAISDIIHCHCSLCRKSTGSAYATNGFIAASDLHLSDADNKLTF
CCCCCEEEEEHEEHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEECCEEECCCCCEEEE
YESEPGKRKYFCQVCASPIYSANAKYPGRYRLRIGSLDSDIIERPLSHNFITSKANWDDP
EECCCCCHHHHHHHHCCHHCCCCCCCCCEEEEEECCCCHHHHHCCCCCCEEECCCCCCCC
DAELPRYAAFEPSRK
CCCCCCEECCCCCCC
>Mature Secondary Structure
MYKGSCLCGAIHYTLNGAISDIIHCHCSLCRKSTGSAYATNGFIAASDLHLSDADNKLTF
CCCCCEEEEEHEEHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEECCEEECCCCCEEEE
YESEPGKRKYFCQVCASPIYSANAKYPGRYRLRIGSLDSDIIERPLSHNFITSKANWDDP
EECCCCCHHHHHHHHCCHHCCCCCCCCCEEEEEECCCCHHHHHCCCCCCEEECCCCCCCC
DAELPRYAAFEPSRK
CCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA