| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is ifcA [H]
Identifier: 119714470
GI number: 119714470
Start: 217732
End: 219144
Strand: Reverse
Name: ifcA [H]
Synonym: Noca_0203
Alternate gene names: 119714470
Gene position: 219144-217732 (Counterclockwise)
Preceding gene: 119714471
Following gene: 119714469
Centisome position: 4.4
GC content: 73.89
Gene sequence:
>1413_bases GTGATCCCCGGCCTGCCGATCGAGGGCGAGCTGCCCGACCGGGTCGGTGTACTCGTGCTCGGCAGCGGGCTCGCCGGGTG CGCCGCCCTGCTCGCCGCGGCTGAGGCCGGTCAGTACGCCGTGCTCCTGGAGAAGACCGGCGCCATCGGCGGCAGCACGG TCCGCTCCGCCGGGCTCTCCGCGTTCGCGGGCACTCCGGAGCAGGTGGCCCAGGGGATCGGCGACTCGGTGGAGCTGCTC AAGAAGGACCTGATGGAGACCGGGCGGCACGTCTGCGACGAGGCGCTGGTCGACCTGTACTGCGCGCACCAGCTCGAGAC CTACGAGTGGCTGACCGGGCACGGCGTCCGGTACGGCGAGGTGCACGCCGCGTCCGGCCAGTCGGTCCCGCGCTCGCACC CCACCGACACCACCGGGATGCTGGTCACCCTGCTCAAGGCGGCCGGCCGGCTGGGTGCCCGGATCCTCCTCGACACGGCC GCCGAGCGGCTGGTCCGCGAGGGCGGCCAAGTGATCGGCGTCGACGTGCGCACCGCGGACGGCAGCCGCCGGCGGATCCT CGCCGACGCGGTCGTGCTCGCCACCGGCGGCTTCGCGCGCAGCCCGGAGCTGCTCACCCGGTTCGCGCCGCAGATGGCGA ACGCGCTCACCGCGGGCGGCGACGGGTGCACCGGCGACGGCCTGCTGATGGGCTGGCAGCTCGGGGCGGGGGTCGTGGAC ACGCCGTACGTCAAGGGGACCTACGGGATCTTCCACGAGGCCCACCCCGACGAGGACGGCACCGGCATCCTCGCGGTCTA CAAGGGCGCGATCGCGGTCAACCGCGAGGGACGCCGCTTCGTCGACGAGTCCCTGCCCTACAAGGAGATCGGCGACGCGG CCCTGGCCCAGCCGGGCGTCACGACCTGGCAGGTCTTCGACGCCGGCGTGATGGCCCAGAGCAACGACGAGGTGCCGATC TACGAGTTCGCGGGCCGCGACCGGGCCGGCATGCTGCTCAAGGCCGACACGGTCGAGGGGCTCGAGGCGCTGGTGGGCCT CCCGGACGGCTCACTCGTCGCGACCGTCGCCGACTACAACGCCCGGATCGCCGATGGCCGGCCCGACCCGCTGGGCCGCG CCCACCTCTCCGGCGGCGTGGATACGCCGACCCCGCTCGACCGGCCCCCGTTCTACGCCCACCCGTCGCGGACCGTCGTG CTCGCGACGTACTGCGGCCTCACGGTGGACACCCGGCTGCGCGTGCTCGACGTGTTCGGGGAGCCGATCGAGCGCCTCTA CGCCGCGGGCGAGGTGATCGGCGGGTTCCACGGCGGCGGCTACATGACCGGCACGTCGATCGGCAAGGCCGGCATCTTCG GCCGCCTGGCCGGGCAGCACGCCGCGGCCGAGGAGAGCGAGCTGACATGGTGA
Upstream 100 bases:
>100_bases TGGCGACCTGGAGCGAGCGTCAGTCGCTGTTCCACCTCCCGGCGTTCACCGCCGCCGAGGCCTACTTCGACCAGCCCCTC GACGTGCTTCGGAGCGAGCG
Downstream 100 bases:
>100_bases GCCCCTTCGACCTCACCGGTCAGGTCGCGCTCGTGGTCGGCGGCGCCGGCGGCCTGGGAGCGCGCGCCGCCACGGCGCTC GCCGCGCAGGGCGCGACCGT
Product: fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
Products: NA
Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]
Number of amino acids: Translated: 470; Mature: 470
Protein sequence:
>470_residues MIPGLPIEGELPDRVGVLVLGSGLAGCAALLAAAEAGQYAVLLEKTGAIGGSTVRSAGLSAFAGTPEQVAQGIGDSVELL KKDLMETGRHVCDEALVDLYCAHQLETYEWLTGHGVRYGEVHAASGQSVPRSHPTDTTGMLVTLLKAAGRLGARILLDTA AERLVREGGQVIGVDVRTADGSRRRILADAVVLATGGFARSPELLTRFAPQMANALTAGGDGCTGDGLLMGWQLGAGVVD TPYVKGTYGIFHEAHPDEDGTGILAVYKGAIAVNREGRRFVDESLPYKEIGDAALAQPGVTTWQVFDAGVMAQSNDEVPI YEFAGRDRAGMLLKADTVEGLEALVGLPDGSLVATVADYNARIADGRPDPLGRAHLSGGVDTPTPLDRPPFYAHPSRTVV LATYCGLTVDTRLRVLDVFGEPIERLYAAGEVIGGFHGGGYMTGTSIGKAGIFGRLAGQHAAAEESELTW
Sequences:
>Translated_470_residues MIPGLPIEGELPDRVGVLVLGSGLAGCAALLAAAEAGQYAVLLEKTGAIGGSTVRSAGLSAFAGTPEQVAQGIGDSVELL KKDLMETGRHVCDEALVDLYCAHQLETYEWLTGHGVRYGEVHAASGQSVPRSHPTDTTGMLVTLLKAAGRLGARILLDTA AERLVREGGQVIGVDVRTADGSRRRILADAVVLATGGFARSPELLTRFAPQMANALTAGGDGCTGDGLLMGWQLGAGVVD TPYVKGTYGIFHEAHPDEDGTGILAVYKGAIAVNREGRRFVDESLPYKEIGDAALAQPGVTTWQVFDAGVMAQSNDEVPI YEFAGRDRAGMLLKADTVEGLEALVGLPDGSLVATVADYNARIADGRPDPLGRAHLSGGVDTPTPLDRPPFYAHPSRTVV LATYCGLTVDTRLRVLDVFGEPIERLYAAGEVIGGFHGGGYMTGTSIGKAGIFGRLAGQHAAAEESELTW >Mature_470_residues MIPGLPIEGELPDRVGVLVLGSGLAGCAALLAAAEAGQYAVLLEKTGAIGGSTVRSAGLSAFAGTPEQVAQGIGDSVELL KKDLMETGRHVCDEALVDLYCAHQLETYEWLTGHGVRYGEVHAASGQSVPRSHPTDTTGMLVTLLKAAGRLGARILLDTA AERLVREGGQVIGVDVRTADGSRRRILADAVVLATGGFARSPELLTRFAPQMANALTAGGDGCTGDGLLMGWQLGAGVVD TPYVKGTYGIFHEAHPDEDGTGILAVYKGAIAVNREGRRFVDESLPYKEIGDAALAQPGVTTWQVFDAGVMAQSNDEVPI YEFAGRDRAGMLLKADTVEGLEALVGLPDGSLVATVADYNARIADGRPDPLGRAHLSGGVDTPTPLDRPPFYAHPSRTVV LATYCGLTVDTRLRVLDVFGEPIERLYAAGEVIGGFHGGGYMTGTSIGKAGIFGRLAGQHAAAEESELTW
Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
Organism=Caenorhabditis elegans, GI71986328, Length=472, Percent_Identity=29.8728813559322, Blast_Score=168, Evalue=6e-42, Organism=Saccharomyces cerevisiae, GI6320788, Length=476, Percent_Identity=25.6302521008403, Blast_Score=104, Evalue=4e-23, Organism=Saccharomyces cerevisiae, GI6322511, Length=476, Percent_Identity=23.9495798319328, Blast_Score=91, Evalue=6e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003953 - InterPro: IPR013027 - InterPro: IPR010960 - InterPro: IPR011031 [H]
Pfam domain/function: PF00890 FAD_binding_2 [H]
EC number: =1.3.99.1 [H]
Molecular weight: Translated: 49028; Mature: 49028
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPGLPIEGELPDRVGVLVLGSGLAGCAALLAAAEAGQYAVLLEKTGAIGGSTVRSAGLS CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHCCCH AFAGTPEQVAQGIGDSVELLKKDLMETGRHVCDEALVDLYCAHQLETYEWLTGHGVRYGE HHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECE VHAASGQSVPRSHPTDTTGMLVTLLKAAGRLGARILLDTAAERLVREGGQVIGVDVRTAD EECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECC GSRRRILADAVVLATGGFARSPELLTRFAPQMANALTAGGDGCTGDGLLMGWQLGAGVVD CCCHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCC TPYVKGTYGIFHEAHPDEDGTGILAVYKGAIAVNREGRRFVDESLPYKEIGDAALAQPGV CCCCCCCHHHCCCCCCCCCCCEEEEEEECEEEECCCCCHHHHHCCCHHHHCCHHHCCCCC TTWQVFDAGVMAQSNDEVPIYEFAGRDRAGMLLKADTVEGLEALVGLPDGSLVATVADYN CEEEEECCCEEECCCCCCCEEEECCCCCCCEEEEECHHHHHHHHHCCCCCCEEEEEECCC ARIADGRPDPLGRAHLSGGVDTPTPLDRPPFYAHPSRTVVLATYCGLTVDTRLRVLDVFG CEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEHHHHHHHHHHC EPIERLYAAGEVIGGFHGGGYMTGTSIGKAGIFGRLAGQHAAAEESELTW HHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MIPGLPIEGELPDRVGVLVLGSGLAGCAALLAAAEAGQYAVLLEKTGAIGGSTVRSAGLS CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHCCCH AFAGTPEQVAQGIGDSVELLKKDLMETGRHVCDEALVDLYCAHQLETYEWLTGHGVRYGE HHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECE VHAASGQSVPRSHPTDTTGMLVTLLKAAGRLGARILLDTAAERLVREGGQVIGVDVRTAD EECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECC GSRRRILADAVVLATGGFARSPELLTRFAPQMANALTAGGDGCTGDGLLMGWQLGAGVVD CCCHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCC TPYVKGTYGIFHEAHPDEDGTGILAVYKGAIAVNREGRRFVDESLPYKEIGDAALAQPGV CCCCCCCHHHCCCCCCCCCCCEEEEEEECEEEECCCCCHHHHHCCCHHHHCCHHHCCCCC TTWQVFDAGVMAQSNDEVPIYEFAGRDRAGMLLKADTVEGLEALVGLPDGSLVATVADYN CEEEEECCCEEECCCCCCCEEEECCCCCCCEEEEECHHHHHHHHHCCCCCCEEEEEECCC ARIADGRPDPLGRAHLSGGVDTPTPLDRPPFYAHPSRTVVLATYCGLTVDTRLRVLDVFG CEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEHHHHHHHHHHC EPIERLYAAGEVIGGFHGGGYMTGTSIGKAGIFGRLAGQHAAAEESELTW HHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10455032; 10581549 [H]